Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056032 ID=TCONS_00056032|Name=TCONS_00056032|organism=Clytia hemisphaerica|type=transcript|length=862bp ATGAGATATAAAATATGATATCCTAAAACAGTAATATCAAGCCTTCTTAC TAAAGATGaaggagaaagaaaaagaagataaaaCTCGAGATGAGGAGAAA ACAGAGGATGAAAGACCATCAAAGAGATCTAAGAAATGGTATTACTTGTG CGCTGTTGTAGCTCTTATTGCAGCTGTTGTTGTTGGGTATAACTATAAGA AAAGATCACCTTATATCTTCGACCGATCGCAAGCAGTTTCACATGAAGTG TTCTCCAAGTTTCAAGAATTTGATACGGATAATGATGGTTACCTATCAAT GAAAGAATTCGAACTGGCGTATGCGTTACTGACAAAAATCACGCCCTCAG ATAGTGGATTGAATATAGCAGAAGTGGAATTGCAAAATttcCATGTGAAT GTGCAAGAAGAATTATCAACAATCCCTTATAATCCTGACGACAAGGTTCT GACCCTCAGAGCGCAATTTATCCCTATGGATCAAAAGACCATgaccaaat ttcaaaatgatCAATATGATTCAGATTCATTAATCCATCTGAAAGGTTTG AACTCATGGCTCCAACCCAACATTGAAATTGCTAATTTCCCAGCAGCCAA CTTCAGCATCTTCCTGCCACCTAATAATAGATGGAGATCGAAAAAAGTGG GAGATACTTGGGATTTGATTTCTAAAGTCCTCGGTGGGCGTAGTGGCTCT TACTTTGGTAATTTTCTCTTAAATTGAATTTATTAGTTCTTAGGCTGTCC AGATTTCATTCTTGTACAATTTGCTTGTCGTTTTCGGTAGGAAATGTTTG TTGAGTTACATGATATTGTAACAAGTAAAACTCCCAATAGCTCAATTTGg gctttttaaaat Run BLAST on NCBI protein sequence of TCONS_00056032-protein >TCONS_00056032-protein ID=TCONS_00056032-protein|Name=TCONS_00056032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MKEKEKEDKTRDEEKTEDERPSKRSKKWYYLCAVVALIAAVVVGYNYKKR SPYIFDRSQAVSHEVFSKFQEFDTDNDGYLSMKEFELAYALLTKITPSDS GLNIAEVELQNFHVNVQEELSTIPYNPDDKVLTLRAQFIPMDQKTMTKFQ NDQYDSDSLIHLKGLNSWLQPNIEIANFPAANFSIFLPPNNRWRSKKVGD TWDLISKVLGGRSGSYFGNFLLN Run BLAST on NCBI transcript from alignment at scaffold_266:577468..579270- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056032 ID=TCONS_00056032|Name=TCONS_00056032|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at scaffold_266:577468..579270- (Clytia hemisphaerica) ATGAGATATAAAATATGATATCCTAAAACAGTAATATCAAGCCTTCTTAC
TAAAGATGAAGGAGAAAGAAAAAGAAGATAAAACTCGAGATGAGGAGAAA
ACAGAGGATGAAAGACCATCAAAGAGATCTAAGAAATGGTATTACTTGTG
CGCTGTTGTAGCTCTTATTGCAGCTGTTGTTGTTGGGTATAACTATAAGA
AAAGATCACCTTATATCTTCGACCGATCGCAAGCAGTTTCACATGAAGTG
TTCTCCAAGTTTCAAGAATTTGATACGGATAATGATGGTTACCTATCAAT
GAAAGAATTCGAACTGGCGTATGCGTTACTGACAAAAATCACGCCCTCAG
ATAGTGGATTGAATATAGCAGAAGTGGAATTGCAAAATGTAAGGCCAATT
TAGAAACATAATTTATAGTTCATTCATCTTCTGTTTTTTTCTGGTTAGTT
GGTTAGGGCTTGTGTATATATATGTCAGTTTTGCTAGATAGAGTAGAATG
GTCTCCTCTTGCAAAAGATTTTACTATTTTACTTTGTTTGGAAAATTTGC
CTCGAAAATTTAACGCCACATGCGTGAATGCCTTATGAAGTTCGAATTGT
TTAAGAAGAGGTTTTCTTTAAAGATGTTGTCTAGAAAATGGTTGTAAACT
TGTGAGATACCAAATAACTTTGGCATGAATGCGCTTCTACTTGAGCTCAG
TCACGAATTCCTTTAAAGGGACATAAAAGTAGTAAAATGTAAACATTGTG
CGAACCACGTGTCATTAAAGAAAACTATTAAAATCACGTGTCCAAAACAA
ACTTGTGAAACAATTGAAACAATCAAAATCAGCCATATTGGTTTTTATTT
TTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCCGCTGCATACG
GTTTGTTTACAAATTTCGTCAGTACTTGTATGCCCTTTTAAGAAAAGATT
CAGTAGAAGGGACAACAGCCTAATAGATAATCATGTATTTCAATATTTTA
GTTCCATGTGAATGTGCAAGAAGAATTATCAACAATCCCTTATAATCCTG
ACGACAAGGTTCTGACCCTCAGAGCGCAATTTATCCCTATGGATCAAAAG
ACCATGACCAAATTTCAAAATGATCAATATGTAAGCTCCTTGTTGATGTT
TTTGAAACGACGGTTTTAAATTGAAATGTTTTTGGCTGTCTATCAGGCCT
GTCAACTGCTTTTCATATGTGACCTTCGGTAGAAATTCGGCAAATTCGGC
ATAGTTTTTTATTAAATACTCTTCAAGTTTTTTTAAGACGTTTGATAATA
ATTTTCACGAACCCTGTCTACTTTTTATCGAAATTTATAGAAAGCATTGT
ACGAAGGATCCTCCTTGACAGAGACTGAGAATTAGTTCCGAATAATAGAA
AAGTTTCGAATAATAGAAGCTTTAATTGATGAGTGTCCTCTGTATCCCTT
TTTTATAGGATTCAGATTCATTAATCCATCTGAAAGGTTTGAACTCATGG
CTCCAACCCAACATTGAAATTGCTAATTTCCCAGCAGCCAACTTCAGCAT
CTTCCTGCCACCTAATAATAGATGGAGATCGAAAAAAGTGGGAGATACTT
GGGATTTGATTTCTAAAGTCCTCGGTGGGCGTAGTGGCTCTTACTTTGGT
AATTTTCTCTTAAATTGAATTTATTAGTTCTTAGGCTGTCCAGATTTCAT
TCTTGTACAATTTGCTTGTCGTTTTCGGTAGGAAATGTTTGTTGAGTTAC
ATGATATTGTAACAAGTAAAACTCCCAATAGCTCAATTTGGGCTTTTTAA
AAT Coding sequence (CDS) from alignment at scaffold_266:577468..579270- >TCONS_00056032 ID=TCONS_00056032|Name=TCONS_00056032|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_266:577468..579270- (Clytia hemisphaerica) GATTCAGATTCATTAATCCATCTGAAAGGTTTGAACTCATGGCTCCAACC CAACATTGAAATTGCTAATTTCCCAGCAGCCAACTTCAGCATCTTCCTGC CACCTAATAATAGATGGAGATCGAAAAAAGTGGGAGATACTTGGGATTTG ATTTCTAAAGTCCTCGGTGGGCGTAGTGGCTCTTACTTTGGTAATTTTCT CTTAAATTGATTCCATGTGAATGTGCAAGAAGAATTATCAACAATCCCTT ATAATCCTGACGACAAGGTTCTGACCCTCAGAGCGCAATTTATCCCTATG GATCAAAAGACCATGACCAAATTTCAAAATGATCAATATATGAAGGAGAA AGAAAAAGAAGATAAAACTCGAGATGAGGAGAAAACAGAGGATGAAAGAC CATCAAAGAGATCTAAGAAATGGTATTACTTGTGCGCTGTTGTAGCTCTT ATTGCAGCTGTTGTTGTTGGGTATAACTATAAGAAAAGATCACCTTATAT CTTCGACCGATCGCAAGCAGTTTCACATGAAGTGTTCTCCAAGTTTCAAG AATTTGATACGGATAATGATGGTTACCTATCAATGAAAGAATTCGAACTG GCGTATGCGTTACTGACAAAAATCACGCCCTCAGATAGTGGATTGAATAT AGCAGAAGTGGAATTGCAAAATGATTCAGATTCATTAATCCATCTGAAAG GTTTGAACTCATGGCTCCAACCCAACATTGAAATTGCTAATTTCCCAGCA GCCAACTTCAGCATCTTCCTGCCACCTAATAATAGATGGAGATCGAAAAA AGTGGGAGATACTTGGGATTTGATTTCTAAAGTCCTCGGTGGGCGTAGTG GCTCTTACTTTGGTAATTTTCTCTTAAATTGATTCCATGTGAATGTGCAA GAAGAATTATCAACAATCCCTTATAATCCTGACGACAAGGTTCTGACCCT CAGAGCGCAATTTATCCCTATGGATCAAAAGACCATGACCAAATTTCAAA ATGATCAATATATGAAGGAGAAAGAAAAAGAAGATAAAACTCGAGATGAG GAGAAAACAGAGGATGAAAGACCATCAAAGAGATCTAAGAAATGGTATTA CTTGTGCGCTGTTGTAGCTCTTATTGCAGCTGTTGTTGTTGGGTATAACT ATAAGAAAAGATCACCTTATATCTTCGACCGATCGCAAGCAGTTTCACAT GAAGTGTTCTCCAAGTTTCAAGAATTTGATACGGATAATGATGGTTACCT ATCAATGAAAGAATTCGAACTGGCGTATGCGTTACTGACAAAAATCACGC CCTCAGATAGTGGATTGAATATAGCAGAAGTGGAATTGCAAAATGATTCA GATTCATTAATCCATCTGAAAGGTTTGAACTCATGGCTCCAACCCAACAT TGAAATTGCTAATTTCCCAGCAGCCAACTTCAGCATCTTCCTGCCACCTA ATAATAGATGGAGATCGAAAAAAGTGGGAGATACTTGGGATTTGATTTCT AAAGTCCTCGGTGGGCGTAGTGGCTCTTACTTTGGTAATTTTCTCTTAAA TTGATTCCATGTGAATGTGCAAGAAGAATTATCAACAATCCCTTATAATC CTGACGACAAGGTTCTGACCCTCAGAGCGCAATTTATCCCTATGGATCAA AAGACCATGACCAAATTTCAAAATGATCAATATATGAAGGAGAAAGAAAA AGAAGATAAAACTCGAGATGAGGAGAAAACAGAGGATGAAAGACCATCAA AGAGATCTAAGAAATGGTATTACTTGTGCGCTGTTGTAGCTCTTATTGCA GCTGTTGTTGTTGGGTATAACTATAAGAAAAGATCACCTTATATCTTCGA CCGATCGCAAGCAGTTTCACATGAAGTGTTCTCCAAGTTTCAAGAATTTG ATACGGATAATGATGGTTACCTATCAATGAAAGAATTCGAACTGGCGTAT GCGTTACTGACAAAAATCACGCCCTCAGATAGTGGATTGAATATAGCAGA AGTGGAATTGCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056032-exon-scaffold_266-1575043694:578883..579270 | TCONS_00056032-exon-scaffold_266-1575043694:578883..579270 | Clytia hemisphaerica | exon |
TCONS_00056032-exon-scaffold_266-1575043694:578141..578269 | TCONS_00056032-exon-scaffold_266-1575043694:578141..578269 | Clytia hemisphaerica | exon |
TCONS_00056032-exon-scaffold_266-1575043694:577468..577812 | TCONS_00056032-exon-scaffold_266-1575043694:577468..577812 | Clytia hemisphaerica | exon |
TCONS_00056032-exon-scaffold_266-1510915933:578883..579270 | TCONS_00056032-exon-scaffold_266-1510915933:578883..579270 | Clytia hemisphaerica | exon |
TCONS_00056032-exon-scaffold_266-1510915933:578141..578269 | TCONS_00056032-exon-scaffold_266-1510915933:578141..578269 | Clytia hemisphaerica | exon |
TCONS_00056032-exon-scaffold_266-1510915933:577468..577812 | TCONS_00056032-exon-scaffold_266-1510915933:577468..577812 | Clytia hemisphaerica | exon |
TCONS_00056032-exon-scaffold_266-1491911889:578883..579270 | TCONS_00056032-exon-scaffold_266-1491911889:578883..579270 | Clytia hemisphaerica | exon |
TCONS_00056032-exon-scaffold_266-1491911889:578141..578269 | TCONS_00056032-exon-scaffold_266-1491911889:578141..578269 | Clytia hemisphaerica | exon |
TCONS_00056032-exon-scaffold_266-1491911889:577468..577812 | TCONS_00056032-exon-scaffold_266-1491911889:577468..577812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_266 | supercontig | scaffold_266:577468..579270 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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