TCONS_00056032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056032
Unique NameTCONS_00056032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056032 ID=TCONS_00056032|Name=TCONS_00056032|organism=Clytia hemisphaerica|type=transcript|length=862bp
ATGAGATATAAAATATGATATCCTAAAACAGTAATATCAAGCCTTCTTAC
TAAAGATGaaggagaaagaaaaagaagataaaaCTCGAGATGAGGAGAAA
ACAGAGGATGAAAGACCATCAAAGAGATCTAAGAAATGGTATTACTTGTG
CGCTGTTGTAGCTCTTATTGCAGCTGTTGTTGTTGGGTATAACTATAAGA
AAAGATCACCTTATATCTTCGACCGATCGCAAGCAGTTTCACATGAAGTG
TTCTCCAAGTTTCAAGAATTTGATACGGATAATGATGGTTACCTATCAAT
GAAAGAATTCGAACTGGCGTATGCGTTACTGACAAAAATCACGCCCTCAG
ATAGTGGATTGAATATAGCAGAAGTGGAATTGCAAAATttcCATGTGAAT
GTGCAAGAAGAATTATCAACAATCCCTTATAATCCTGACGACAAGGTTCT
GACCCTCAGAGCGCAATTTATCCCTATGGATCAAAAGACCATgaccaaat
ttcaaaatgatCAATATGATTCAGATTCATTAATCCATCTGAAAGGTTTG
AACTCATGGCTCCAACCCAACATTGAAATTGCTAATTTCCCAGCAGCCAA
CTTCAGCATCTTCCTGCCACCTAATAATAGATGGAGATCGAAAAAAGTGG
GAGATACTTGGGATTTGATTTCTAAAGTCCTCGGTGGGCGTAGTGGCTCT
TACTTTGGTAATTTTCTCTTAAATTGAATTTATTAGTTCTTAGGCTGTCC
AGATTTCATTCTTGTACAATTTGCTTGTCGTTTTCGGTAGGAAATGTTTG
TTGAGTTACATGATATTGTAACAAGTAAAACTCCCAATAGCTCAATTTGg
gctttttaaaat
Run BLAST on NCBI

protein sequence of TCONS_00056032-protein

>TCONS_00056032-protein ID=TCONS_00056032-protein|Name=TCONS_00056032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MKEKEKEDKTRDEEKTEDERPSKRSKKWYYLCAVVALIAAVVVGYNYKKR
SPYIFDRSQAVSHEVFSKFQEFDTDNDGYLSMKEFELAYALLTKITPSDS
GLNIAEVELQNFHVNVQEELSTIPYNPDDKVLTLRAQFIPMDQKTMTKFQ
NDQYDSDSLIHLKGLNSWLQPNIEIANFPAANFSIFLPPNNRWRSKKVGD
TWDLISKVLGGRSGSYFGNFLLN
Run BLAST on NCBI

transcript from alignment at scaffold_266:577468..579270-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056032 ID=TCONS_00056032|Name=TCONS_00056032|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at scaffold_266:577468..579270- (Clytia hemisphaerica)
ATGAGATATAAAATATGATATCCTAAAACAGTAATATCAAGCCTTCTTAC TAAAGATGAAGGAGAAAGAAAAAGAAGATAAAACTCGAGATGAGGAGAAA ACAGAGGATGAAAGACCATCAAAGAGATCTAAGAAATGGTATTACTTGTG CGCTGTTGTAGCTCTTATTGCAGCTGTTGTTGTTGGGTATAACTATAAGA AAAGATCACCTTATATCTTCGACCGATCGCAAGCAGTTTCACATGAAGTG TTCTCCAAGTTTCAAGAATTTGATACGGATAATGATGGTTACCTATCAAT GAAAGAATTCGAACTGGCGTATGCGTTACTGACAAAAATCACGCCCTCAG ATAGTGGATTGAATATAGCAGAAGTGGAATTGCAAAATGTAAGGCCAATT TAGAAACATAATTTATAGTTCATTCATCTTCTGTTTTTTTCTGGTTAGTT GGTTAGGGCTTGTGTATATATATGTCAGTTTTGCTAGATAGAGTAGAATG GTCTCCTCTTGCAAAAGATTTTACTATTTTACTTTGTTTGGAAAATTTGC CTCGAAAATTTAACGCCACATGCGTGAATGCCTTATGAAGTTCGAATTGT TTAAGAAGAGGTTTTCTTTAAAGATGTTGTCTAGAAAATGGTTGTAAACT TGTGAGATACCAAATAACTTTGGCATGAATGCGCTTCTACTTGAGCTCAG TCACGAATTCCTTTAAAGGGACATAAAAGTAGTAAAATGTAAACATTGTG CGAACCACGTGTCATTAAAGAAAACTATTAAAATCACGTGTCCAAAACAA ACTTGTGAAACAATTGAAACAATCAAAATCAGCCATATTGGTTTTTATTT TTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCCGCTGCATACG GTTTGTTTACAAATTTCGTCAGTACTTGTATGCCCTTTTAAGAAAAGATT CAGTAGAAGGGACAACAGCCTAATAGATAATCATGTATTTCAATATTTTA GTTCCATGTGAATGTGCAAGAAGAATTATCAACAATCCCTTATAATCCTG ACGACAAGGTTCTGACCCTCAGAGCGCAATTTATCCCTATGGATCAAAAG ACCATGACCAAATTTCAAAATGATCAATATGTAAGCTCCTTGTTGATGTT TTTGAAACGACGGTTTTAAATTGAAATGTTTTTGGCTGTCTATCAGGCCT GTCAACTGCTTTTCATATGTGACCTTCGGTAGAAATTCGGCAAATTCGGC ATAGTTTTTTATTAAATACTCTTCAAGTTTTTTTAAGACGTTTGATAATA ATTTTCACGAACCCTGTCTACTTTTTATCGAAATTTATAGAAAGCATTGT ACGAAGGATCCTCCTTGACAGAGACTGAGAATTAGTTCCGAATAATAGAA AAGTTTCGAATAATAGAAGCTTTAATTGATGAGTGTCCTCTGTATCCCTT TTTTATAGGATTCAGATTCATTAATCCATCTGAAAGGTTTGAACTCATGG CTCCAACCCAACATTGAAATTGCTAATTTCCCAGCAGCCAACTTCAGCAT CTTCCTGCCACCTAATAATAGATGGAGATCGAAAAAAGTGGGAGATACTT GGGATTTGATTTCTAAAGTCCTCGGTGGGCGTAGTGGCTCTTACTTTGGT AATTTTCTCTTAAATTGAATTTATTAGTTCTTAGGCTGTCCAGATTTCAT TCTTGTACAATTTGCTTGTCGTTTTCGGTAGGAAATGTTTGTTGAGTTAC ATGATATTGTAACAAGTAAAACTCCCAATAGCTCAATTTGGGCTTTTTAA AAT

Coding sequence (CDS) from alignment at scaffold_266:577468..579270-

>TCONS_00056032 ID=TCONS_00056032|Name=TCONS_00056032|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_266:577468..579270- (Clytia hemisphaerica)
GATTCAGATTCATTAATCCATCTGAAAGGTTTGAACTCATGGCTCCAACC
CAACATTGAAATTGCTAATTTCCCAGCAGCCAACTTCAGCATCTTCCTGC
CACCTAATAATAGATGGAGATCGAAAAAAGTGGGAGATACTTGGGATTTG
ATTTCTAAAGTCCTCGGTGGGCGTAGTGGCTCTTACTTTGGTAATTTTCT
CTTAAATTGATTCCATGTGAATGTGCAAGAAGAATTATCAACAATCCCTT
ATAATCCTGACGACAAGGTTCTGACCCTCAGAGCGCAATTTATCCCTATG
GATCAAAAGACCATGACCAAATTTCAAAATGATCAATATATGAAGGAGAA
AGAAAAAGAAGATAAAACTCGAGATGAGGAGAAAACAGAGGATGAAAGAC
CATCAAAGAGATCTAAGAAATGGTATTACTTGTGCGCTGTTGTAGCTCTT
ATTGCAGCTGTTGTTGTTGGGTATAACTATAAGAAAAGATCACCTTATAT
CTTCGACCGATCGCAAGCAGTTTCACATGAAGTGTTCTCCAAGTTTCAAG
AATTTGATACGGATAATGATGGTTACCTATCAATGAAAGAATTCGAACTG
GCGTATGCGTTACTGACAAAAATCACGCCCTCAGATAGTGGATTGAATAT
AGCAGAAGTGGAATTGCAAAATGATTCAGATTCATTAATCCATCTGAAAG
GTTTGAACTCATGGCTCCAACCCAACATTGAAATTGCTAATTTCCCAGCA
GCCAACTTCAGCATCTTCCTGCCACCTAATAATAGATGGAGATCGAAAAA
AGTGGGAGATACTTGGGATTTGATTTCTAAAGTCCTCGGTGGGCGTAGTG
GCTCTTACTTTGGTAATTTTCTCTTAAATTGATTCCATGTGAATGTGCAA
GAAGAATTATCAACAATCCCTTATAATCCTGACGACAAGGTTCTGACCCT
CAGAGCGCAATTTATCCCTATGGATCAAAAGACCATGACCAAATTTCAAA
ATGATCAATATATGAAGGAGAAAGAAAAAGAAGATAAAACTCGAGATGAG
GAGAAAACAGAGGATGAAAGACCATCAAAGAGATCTAAGAAATGGTATTA
CTTGTGCGCTGTTGTAGCTCTTATTGCAGCTGTTGTTGTTGGGTATAACT
ATAAGAAAAGATCACCTTATATCTTCGACCGATCGCAAGCAGTTTCACAT
GAAGTGTTCTCCAAGTTTCAAGAATTTGATACGGATAATGATGGTTACCT
ATCAATGAAAGAATTCGAACTGGCGTATGCGTTACTGACAAAAATCACGC
CCTCAGATAGTGGATTGAATATAGCAGAAGTGGAATTGCAAAATGATTCA
GATTCATTAATCCATCTGAAAGGTTTGAACTCATGGCTCCAACCCAACAT
TGAAATTGCTAATTTCCCAGCAGCCAACTTCAGCATCTTCCTGCCACCTA
ATAATAGATGGAGATCGAAAAAAGTGGGAGATACTTGGGATTTGATTTCT
AAAGTCCTCGGTGGGCGTAGTGGCTCTTACTTTGGTAATTTTCTCTTAAA
TTGATTCCATGTGAATGTGCAAGAAGAATTATCAACAATCCCTTATAATC
CTGACGACAAGGTTCTGACCCTCAGAGCGCAATTTATCCCTATGGATCAA
AAGACCATGACCAAATTTCAAAATGATCAATATATGAAGGAGAAAGAAAA
AGAAGATAAAACTCGAGATGAGGAGAAAACAGAGGATGAAAGACCATCAA
AGAGATCTAAGAAATGGTATTACTTGTGCGCTGTTGTAGCTCTTATTGCA
GCTGTTGTTGTTGGGTATAACTATAAGAAAAGATCACCTTATATCTTCGA
CCGATCGCAAGCAGTTTCACATGAAGTGTTCTCCAAGTTTCAAGAATTTG
ATACGGATAATGATGGTTACCTATCAATGAAAGAATTCGAACTGGCGTAT
GCGTTACTGACAAAAATCACGCCCTCAGATAGTGGATTGAATATAGCAGA
AGTGGAATTGCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035256XLOC_035256Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056032-proteinTCONS_00056032-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056032-exon-scaffold_266-1575043694:578883..579270TCONS_00056032-exon-scaffold_266-1575043694:578883..579270Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1575043694:578141..578269TCONS_00056032-exon-scaffold_266-1575043694:578141..578269Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1575043694:577468..577812TCONS_00056032-exon-scaffold_266-1575043694:577468..577812Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1510915933:578883..579270TCONS_00056032-exon-scaffold_266-1510915933:578883..579270Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1510915933:578141..578269TCONS_00056032-exon-scaffold_266-1510915933:578141..578269Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1510915933:577468..577812TCONS_00056032-exon-scaffold_266-1510915933:577468..577812Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1491911889:578883..579270TCONS_00056032-exon-scaffold_266-1491911889:578883..579270Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1491911889:578141..578269TCONS_00056032-exon-scaffold_266-1491911889:578141..578269Clytia hemisphaericaexon
TCONS_00056032-exon-scaffold_266-1491911889:577468..577812TCONS_00056032-exon-scaffold_266-1491911889:577468..577812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:577468..579270 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (3.19881 tpm) - - (112.578 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.95429 6.94047 3.19881 3.67119 8.27923 5.8476 10.7569 13.144 21.106 19.9619 18.2746 15.7761 30.5328 24.5413 25.6677 29.3994 110.611 112.578 20.4451 24.2952 21.8524 22.1375 17.3801 20.5017 22.4579 23.2188 36.0569 23.9313 27.2567 29.3063
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
back to top