TCONS_00056037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056037
Unique NameTCONS_00056037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056037 ID=TCONS_00056037|Name=TCONS_00056037|organism=Clytia hemisphaerica|type=transcript|length=571bp
NNGCTTTCTTTACACTGGTGTGCATGACGGTCAGTAATTATGGTCCAGTG
TGGCAAAAAGATGCGTTCCAATCAGTAGGTCTGTGGAAAACATGCTACCT
AGCAAACGGTATTTGTGTAAAGCTATCCAAAGTGACATCAACGCACGAAG
TGGTTCGCGCTTTCTCCGTTCTTTCGGTATTGATGGCTTTCTTCGGTACT
TTGGCAGCTTTTTTGTCGTACAAAACAGAGAAGACGACAGGTGTACCCGC
ATCCCTTCTCTTGTTGGCATGTGTGTTGTGCAGCATCATCGCACTGGCGG
TTTACACTGACGAGAACGGAAGCAACATAAAAAGTACGATTGGCCTTGAC
TTCGGTTGGTCTTTTATCTTGGCATGGATATCAACTGGTATGGCCTTCAT
AGGTATGGTTGTAGGCTTTCTAACCCTCTATCAATATGGATATTAAACGA
GGTCAAGTTATTTGGTAAGAACCTTTACAGGATTGCATGAAATAATGgag
aagaaatcaaaaaatgaagttctGTCCCAATTACTTTGGCTTGCTGTGAA
GTTTCGAATGATAAGAGCTNN
Run BLAST on NCBI

protein sequence of TCONS_00056037-protein

>TCONS_00056037-protein ID=TCONS_00056037-protein|Name=TCONS_00056037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
AFFTLVCMTVSNYGPVWQKDAFQSVGLWKTCYLANGICVKLSKVTSTHEV
VRAFSVLSVLMAFFGTLAAFLSYKTEKTTGVPASLLLLACVLCSIIALAV
YTDENGSNIKSTIGLDFGWSFILAWISTGMAFIGMVVGFLTLYQYGY
Run BLAST on NCBI

transcript from alignment at scaffold_266:75545..76115

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056037 ID=TCONS_00056037|Name=TCONS_00056037|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at scaffold_266:75545..76115 (Clytia hemisphaerica)
NNAGCTCTTATCATTCGAAACTTCACAGCAAGCCAAAGTAATTGGGACag
aacttcattttttgatttcttctcCATTATTTCATGCAATCCTGTAAAGG
TTCTTACCAAATAACTTGACCTCGTTTAATATCCATATTGATAGAGGGTT
AGAAAGCCTACAACCATACCTATGAAGGCCATACCAGTTGATATCCATGC
CAAGATAAAAGACCAACCGAAGTCAAGGCCAATCGTACTTTTTATGTTGC
TTCCGTTCTCGTCAGTGTAAACCGCCAGTGCGATGATGCTGCACAACACA
CATGCCAACAAGAGAAGGGATGCGGGTACACCTGTCGTCTTCTCTGTTTT
GTACGACAAAAAAGCTGCCAAAGTACCGAAGAAAGCCATCAATACCGAAA
GAACGGAGAAAGCGCGAACCACTTCGTGCGTTGATGTCACTTTGGATAGC
TTTACACAAATACCGTTTGCTAGGTAGCATGTTTTCCACAGACCTACTGA
TTGGAACGCATCTTTTTGCCACACTGGACCATAATTACTGACCGTCATGC
ACACCAGTGTAAAGAAAGCNN

Coding sequence (CDS) from alignment at scaffold_266:75545..76115

>TCONS_00056037 ID=TCONS_00056037|Name=TCONS_00056037|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_266:75545..76115 (Clytia hemisphaerica)
TTAATATCCATATTGATAGAGGGTTAGAAAGCCTACAACCATACCTATGA
AGGCCATACCAGTTGATATCCATGCCAAGATAAAAGACCAACCGAAGTCA
AGGCCAATCGTACTTTTTATGTTGCTTCCGTTCTCGTCAGTGTAAACCGC
CAGTGCGATGATGCTGCACAACACACATGCCAACAAGAGAAGGGATGCGG
GTACACCTGTCGTCTTCTCTGTTTTGTACGACAAAAAAGCTGCCAAAGTA
CCGAAGAAAGCCATCAATACCGAAAGAACGGAGAAAGCGCGAACCACTTC
GTGCGTTGATGTCACTTTGGATAGCTTTACACAAATACCGTTTGCTAGGT
AGCATGTTTTCCACAGACCTACTGATTGGAACGCATCTTTTTGCCACACT
GGACCATAATTACTGACCGTCATGCACACCAGTGTAAAGAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035261XLOC_035261Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056037-proteinTCONS_00056037-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056037-exon-scaffold_266-1491911889:75545..76115TCONS_00056037-exon-scaffold_266-1491911889:75545..76115Clytia hemisphaericaexon
TCONS_00056037-exon-scaffold_266-1510915933:75545..76115TCONS_00056037-exon-scaffold_266-1510915933:75545..76115Clytia hemisphaericaexon
TCONS_00056037-exon-scaffold_266-1575043694:75545..76115TCONS_00056037-exon-scaffold_266-1575043694:75545..76115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:75545..76115 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294014	0.19114	0.221932	0.217126	0.26433	0.208877	6.55203	6.48782	16.6825	14.0147	11.22	14.1637	0.651799	0.47383	0	0	19.3494	33.2553	0.208363	0.436073	60.0757	58.9292	10.2257	29.218	28.5155	34.3708	0	0.143418	0.108778	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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