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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056046 ID=TCONS_00056046|Name=TCONS_00056046|organism=Clytia hemisphaerica|type=transcript|length=2746bp
aagaccccatcggatttggGGAGGGTTGTCGGTAGACAGGAGgttgtcgg
atttaggaccactcacggtacacTCTATAAGtataagtttgttttgtttt
cttttaaccCAACTGGTATGATTTTGCTTTGGAATCCATGCGTTTGGTGG
TTCGAGCAGTTGACGCTTGGGAGATTATATTAGAATCagttttgaaaaga
aagaaaataactcAGAAGCAATTCAAAGACTCAGACATATTCAAAAGTAG
AATGAAAGATTGGAAATAGAGAAAGTACAGTAACTTGGTCgacgacatcc
ctcttctaatatTGTGGGGAGTCATTTACAATCTACACAGCACCGTTGAA
TGTCAAACATacctcatctaattccgacactcTTCTTTATAGGATGGGAA
TAATAGggaggtcggaatcgctgattgaaactataTATATTCTTTGCTTA
GAGGTCAGAGAGGAAATAACCTTTTGTCTCACAGCTCTTAAAACTTTTGT
CttaaacaaaaatcttaaaCAATGAACTTCACTAACTTCTAAAAGCAACT
TTGCTATCAACCTTTCTACTTTTAAAATACTTAGAGATCCAGtccaaaag
tacaaaatattccTAAACCTTACCTTctttttggataatttgaacTCTGG
GATCATTTAATTGCATTTAAGGACAAAATAGGTTAatagcaaaattgttt
tttgggTTTGGTAAAGCTCACCTTTGAAGATTTGAGATTTTAGAAacaca
ttttgacagacttaatctttttaaatggtagatcaggaggtaaagatctt
gatgaaagtttgtactatccccatgaaactttccaaaaaccaagATTTCA
TTGTCTTAGAGGActcattttctgttcaatcttgaTCAAAAATTGTTGCT
TTTAACAgcattgtcaagatttttaggattttagagtTAAGACGGATTTT
GAGCTAGCCCTAatatttataaaagaaagaaaacggGTTCCAACTTTTGA
TAAATTGTTGCACtatctataggatgctttcacAAAATTAAGAAACATGT
ATCAATGGGTACTCATTTCgggcaaaaatttcagccaaaaatgtactttt
aagtcaattttgcaaaattaaGGGGGTCAGGAAAGTTAGAagaatcatga
ttttcagatcaaatttattttctaactGCCAGTTATTGGCTGCAATATAA
TGACTCTAGTCAAAAAGTTGAGAAGaaaagcctttttggcccaagaaagc
acatttgacaacttttttcacctagtttcatgGTTTTGATATGAAAGATT
CATCATACAGTATCCCTTATATTACaacaaattcagtgacctagacccGT
TTAAAATCTGTCAATGGGCTaaaatatcccaaattttagtcattttttga
GCAATATTATATTAAGAAAGCTTTTAAATCAAGATTaaaaattaatggta
ggagGTCACATAGGTTTTTCTTTTAATCCTGAGATACCAGACAATTATCT
TTTAGGAACAGAGGAGTTGGAGGCCAGAAAATGTTCagatttctaggaaa
attaggctaaagttggtacttttttaGACCTAATTGGCTTTTCAGGCCTC
TAGGGGCCAGCAAGGctgtaattttttattgcaaccACTTCGAATGGATA
GACCAGGGACTGAACTACAAGGAATTATTATTTTGAACAGGAACAAATTC
CTCTGGGACTGGTCAGATGGCTTTAAAATACccataaaatcaaatttgta
gtgtttttgtgacgtcataactaaGAACatatctaaaaattaaaaaaatc
taagtttcaaactattggacctgccccgctcttaaaaaactggctcttaa
ggGGTCACATATTGATTCTTCCCACggctaacgtcaaattgacgcgaagG
GGTGGGGGGTTAAAGTCTGTGAagctaagaaatttcaccagaaatattga
ttttttgagacgtttattctgtgacaaatgttactttccaaatttctttt
cctccttttatatACCTAAGTATTTGTTTGCTTCGCTATtttatagaaca
attttaaccaaaacaaatggaccgatgtttatgtctcgtgttccttttgt
ttagatGGTCTGCGCGGCCCTTGAATTTCACGGACGGTCGgtcttttttt
tgtgaaatgtcgCTATTCTGTTGATTATGATTACGGAGATATGATTAATT
CCAGCAGctttgcaaaaaaaagtttaggggttttcaaattattaattatt
aatttgACGTTATTCGTGGGAAGAAtcaatatgtgagtgacccctaagtA
ATAGATGTCAGATGTGCtcacgaaaaaaattgaataatattGCGGAAata
gatttcagattttttaaattgattATTGACTCCATTGACAATATTTGCCA
AATAGAGCCAGAATTGgtatttttattcaaaacacCTCACTGCCAGGCCA
AGAcacttgaaaacttttttctcaGTGACACTTTAAAAGGATTAATTTTC
CATGAGACTCACAATatatttttgtgaataattgttttcaaatattttgt
gtgAAAAAGGCAATAGTTCGGCTAATTTGAAACTCAGGTCAAAGGTTACA
GGTCAATAGGTCACATATTATAAGCCAGGGaattttctaagcactttgag
ctggaactgttttttgtaaatttagatTGAGTTTCTAATAATGCCTGAAA
GGGAACATGAAGCTGGAGGTCTGGGCGCTGTTTGAAAATTATCTTT Run BLAST on NCBI transcript from alignment at scaffold_266:348189..350934 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056046 ID=TCONS_00056046|Name=TCONS_00056046|organism=Clytia hemisphaerica|type=transcript|length=2746bp|location=Sequence derived from alignment at scaffold_266:348189..350934 (Clytia hemisphaerica)
AAAGATAATTTTCAAACAGCGCCCAGACCTCCAGCTTCATGTTCCCTTTC
AGGCATTATTAGAAACTCAatctaaatttacaaaaaacagttccagctca
aagtgcttagaaaattCCCTGGCTTATAATATGTGACCTATTGACCTGTA
ACCTTTGACCTGAGTTTCAAATTAGCCGAACTATTGCCTTTTTcacacaa
aatatttgaaaacaattattcacaaaaatatATTGTGAGTCTCATGGAAA
ATTAATCCTTTTAAAGTGTCACtgagaaaaaagttttcaagtgTCTTGGC
CTGGCAGTGAGgtgttttgaataaaaatacCAATTCTGGCTCTATTTGGC
AAATATTGTCAATGGAGTCAATaatcaatttaaaaaatctgaaatctatT
TCCGCaatattattcaatttttttcgtgaGCACATCTGACATCTATTact
taggggtcactcacatattgaTTCTTCCCACGAATAACGTcaaattaata
attaataatttgaaaacccctaaacttttttttgcaaagCTGCTGGAATT
AATCATATCTCCGTAATCATAATCAACAGAATAGcgacatttcacaaaaa
aaagacCGACCGTCCGTGAAATTCAAGGGCCGCGCAGACCatctaaacaa
aaggaacacgagacataaacatcggtccatttgttttggttaaaattgtt
ctataaaATAGCGAAGCAAACAAATACTTAGGTatataaaaggaggaaaa
gaaatttggaaagtaacatttgtcacagaataaacgtctcaaaaaatcaa
tatttctggtgaaatttcttagctTCACAGACTTTAACCCCCCACCCctt
cgcgtcaatttgacgttagccGTGGGAAGAATCAATATGTGACCccttaa
gagccagttttttaagagcggggcaggtccaatagtttgaaacttagatt
tttttaatttttagatatGTTCttagttatgacgtcacaaaaacactaca
aatttgattttatggGTATTTTAAAGCCATCTGACCAGTCCCAGAGGAAT
TTGTTCCTGTTCAAAATAATAATTCCTTGTAGTTCAGTCCCTGGTCTATC
CATTCGAAGTggttgcaataaaaaattacagCCTTGCTGGCCCCTAGAGG
CCTGAAAAGCCAATTAGGTCtaaaaaagtaccaactttagcctaattttc
ctagaaatctGAACATTTTCTGGCCTCCAACTCCTCTGTTCCTAAAAGAT
AATTGTCTGGTATCTCAGGATTAAAAGAAAAACCTATGTGACctcctacc
attaatttttAATCTTGATTTAAAAGCTTTCTTAATATAATATTGCtcaa
aaaatgactaaaatttgggatattttAGCCCATTGACAGATTTTAAACgg
gtctaggtcactgaatttgttGTAATATAAGGGATACTGTATGATGAATC
TTTCATATCAAAACcatgaaactaggtgaaaaaagttgtcaaatgtgctt
tcttgggccaaaaaggcttttCTTCTCAACTTTTTGACTAGAGTCATTAT
ATTGCAGCCAATAACTGGCagttagaaaataaatttgatctgaaaatcat
gattctTCTAACTTTCCTGACCCCCttaattttgcaaaattgacttaaaa
gtacatttttggctgaaatttttgcccGAAATGAGTACCCATTGATACAT
GTTTCTTAATTTTgtgaaagcatcctatagataGTGCAACAATTTATCAA
AAGTTGGAACccgttttctttcttttataaatatTAGGGCTAGCTCAAAA
TCCGTCTTAactctaaaatcctaaaaatcttgacaatgcTGTTAAAAGCA
ACAATTTTTGAtcaagattgaacagaaaatgagTCCTCTAAGACAATGAA
ATcttggtttttggaaagtttcatggggatagtacaaactttcatcaaga
tctttacctcctgatctaccatttaaaaagattaagtctgtcaaaatgtg
tTTCTAAAATCTCAAATCTTCAAAGGTGAGCTTTACCAAAcccaaaaaac
aattttgctatTAACCTATTTTGTCCTTAAATGCAATTAAATGATCCCAG
AgttcaaattatccaaaaagAAGGTAAGGTTTAggaatattttgtacttt
tggaCTGGATCTCTAAGTATTTTAAAAGTAGAAAGGTTGATAGCAAAGTT
GCTTTTAGAAGTTAGTGAAGTTCATTGtttaagatttttgtttaaGACAA
AAGTTTTAAGAGCTGTGAGACAAAAGGTTATTTCCTCTCTGACCTCTAAG
CAAAGAATATAtatagtttcaatcagcgattccgacctccCTATTATTCC
CATCCTATAAAGAAgagtgtcggaattagatgaggtATGTTTGACATTCA
ACGGTGCTGTGTAGATTGTAAATGACTCCCCACAatattagaagagggat
gtcgtcGACCAAGTTACTGTACTTTCTCTATTTCCAATCTTTCATTCTAC
TTTTGAATATGTCTGAGTCTTTGAATTGCTTCTgagttattttctttctt
ttcaaaactGATTCTAATATAATCTCCCAAGCGTCAACTGCTCGAACCAC
CAAACGCATGGATTCCAAAGCAAAATCATACCAGTTGggttaaaagaaaa
caaaacaaacttataCTTATAGAgtgtaccgtgagtggtcctaaatccga
caacCTCCTGTCTACCGACAACCCTCCccaaatccgatggggtctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056046-exon-scaffold_266-1491911889:348189..350934 | TCONS_00056046-exon-scaffold_266-1491911889:348189..350934 | Clytia hemisphaerica | exon |
| TCONS_00056046-exon-scaffold_266-1510915933:348189..350934 | TCONS_00056046-exon-scaffold_266-1510915933:348189..350934 | Clytia hemisphaerica | exon |
| TCONS_00056046-exon-scaffold_266-1575043694:348189..350934 | TCONS_00056046-exon-scaffold_266-1575043694:348189..350934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:348189..350934 . |
Blast
The following BLAST results are available for this feature:
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