TCONS_00056057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056057
Unique NameTCONS_00056057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056057 ID=TCONS_00056057|Name=TCONS_00056057|organism=Clytia hemisphaerica|type=transcript|length=247bp
TTTGTAACAAGTTTTTTCGGGTCTATTCGTATTTTACAAGCCGATTCGTG
CAAAGTGTATCTACTGTGCGTGTGTCCaattacaaaaaagaaaataaatt
cacaaaATATTATTACAAAGAGAGACACaaaattataaaacaaaataaca
aaaaaataacaaatccattaaaaaacagaaaacaaaaaaaaaaaattaat
gatgtgCAGTAAAATTAAAGTCCCTTTGACAAAAAGCCTGCGAATAC
Run BLAST on NCBI

transcript from alignment at scaffold_266:644804..645050

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056057 ID=TCONS_00056057|Name=TCONS_00056057|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at scaffold_266:644804..645050 (Clytia hemisphaerica)
GTATTCGCAGGCTTTTTGTCAAAGGGACTTTAATTTTACTGcacatcatt
aattttttttttttgttttctgttttttaatggatttgttatttttttgt
tattttgttttataattttGTGTCTCTCTTTGTAATAATATtttgtgaat
ttattttcttttttgtaattGGACACACGCACAGTAGATACACTTTGCAC
GAATCGGCTTGTAAAATACGAATAGACCCGAAAAAACTTGTTACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035281XLOC_035281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056057-exon-scaffold_266-1491911889:644804..645050TCONS_00056057-exon-scaffold_266-1491911889:644804..645050Clytia hemisphaericaexon
TCONS_00056057-exon-scaffold_266-1510915933:644804..645050TCONS_00056057-exon-scaffold_266-1510915933:644804..645050Clytia hemisphaericaexon
TCONS_00056057-exon-scaffold_266-1575043694:644804..645050TCONS_00056057-exon-scaffold_266-1575043694:644804..645050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:644804..645050 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.412	0.784027	1.82066	0.890616	4.33696	5.14068	10.3367	19.3542	3.38758	4.19606	4.88736	2.6773	0	0.555307	0	0.97987	3.0178	1.23726	1.70934	1.7887	1.55471	5.68748	1.8437	1.67619	3.45288	3.08161	2.20489	2.35312	0.892378	1.81838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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