TCONS_00056060 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056060
Unique Name	TCONS_00056060
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1056

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_267:1799..5533+

transcript sequence

>TCONS_00056060 ID=TCONS_00056060|Name=TCONS_00056060|organism=Clytia hemisphaerica|type=transcript|length=1056bp
cagtcgAATCTTGAAGCGAAACATGGCGTGTCGGGTTTTCACGATGCCCA
AGAAGAACTCGAGAAAGTTTCAACTATGAAAGGTGAACTAGATGAGAAGA
AAGGCAAAACATTGGAAGAAATGTCTCAATTGGTGGTTCAACTAACGAAC
AGTATCTCAGAGAAGAAGAATTCATTAGCTCCTGTCATCAAAGAATTGAG
ACCGTTACGTCAACAAGCTCAGGAGTTGTCTGTGGAGTACGAAGAACGAA
AAGGAACTTATGAAACAACTGCTGCTGGCCTCGAAAGCAACATGTCTAAA
CTTGACCAGGAGGTTAAAGCACTTCGCGAAGAGGTTTTGGCGGAAGAAAG
TCGTTACCATTACATGGAATCCATGATCGAGGTATTGGAGGTCCAACAAC
AGCGTATCGACGAAGAAATTAAATCTTATGTCAACACTGATGGTTCCAAG
AAATCTCTCAGGGATAAATATTCACAGAGGATTCATGAACAAGAAGTATT
GGGAAAGCAATTACGTGAGAAGCAGAAATATCTCCGAGAAAATCATGCTC
CCAATATGCGCCAAATGAAAATGTGGACTGATCTGACGCAACTGTTGAAG
TGCAAGAAAGAAAGCTTGAGCGGACCAACAACAAACACGGTTGAAGATCC
GGCTCTGTACGATGAACAAGACCATctcgttctgtaaaatacatgcACTT
GAGGTTTTTAATACAAGGCCATCTTGAATTCTTTTATTTCACACGCTATA
agacttttttcgaaaaatgacgACCATACGCTTCTTTTTGTAATCAgtca
aattgtaaattttttttgatttcatttttaactgtaaattttttggttta
atttaTATATTGTAACATCAAGTTTTTGTTCATTGTGCACActataaaag
ataaaaaaatatatcagcAAACAAGATTAAAACGTGTCAGTTCTCACCTG
AACGAAGTCTAAacataagcataaattaaggctgaaaatgagattttgtt
aAGCATACTcttgggtgcctaataaacgtacagaccaaaataaacgtaca
ggaggg

Run BLAST on NCBI

transcript from alignment at scaffold_267:1799..5533+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056060 ID=TCONS_00056060|Name=TCONS_00056060|organism=Clytia hemisphaerica|type=transcript|length=3735bp|location=Sequence derived from alignment at scaffold_267:1799..5533+ (Clytia hemisphaerica)
cagtcgAATCTTGAAGCGAAACATGGCGTGTCGGGTTTTCACGATGCCCA
AGAAGAACTCGAGAAAGTTTCAACTATGAAAGGTGAACTAGATGAGAAGA
AAGGCAAAACATTGGAAGAAATGTCTCAATTGGTATGCTGACTTtatatt
attttccttttcttttccgGGGGACGAGTTTTGCACAATTGACGATGTTT
TAGGTCAGAGGGATATAGGGGCATATAGAATGGATGGcatcaaaaatatt
aaaatccaGGTTTTATTCTCAAATTTGGTGAGTTAAAAAGTGAACAATGA
ATTGCACCGGGGAGCACTtagtaccgagtttatgtatgtgtgtttttcag
cgacagAGACAGTAAGGTTCaaatttgactagatcatgaccagctgagaa
cgacggtaaatcagcacttttaccgtcctcgattttgcggggcagaactg
cgggttattccaaatcgcttcagtcactttaccgtcctcaaaagtgcaaa
tatataaacTCGCTAGTGGTACGCCGCCTGACAGTGCTGACGGAGGTTTG
GTGATTGCTACCAATGTCGCAATAGATGGTTTTAAGATATTATCTCTGAT
AATGTGGCAATGATAAACAATAATTGTTTTGGAAACGCGTGACAAAATGT
AGACAATTTAGACATGATTGAccattgtttttcattttgcaGGTGGTTCA
ACTAACGAACAGTATCTCAGAGAAGAAGAATTCATTAGCTCCTGTCATCA
AAGAATTGAGACCGTTACGTCAACAAGCTCAGGTAACCCTTTGAAAAGTA
TTTCTTCTTGCTTCCTCTCGAATTTTCTGTCGGTTAAATCATCACATTAC
AGGTACAAAGGATGATCGACACAATTTTCATGAGAAGGATCAATTCTGTT
atgatattttaattttgagtGGCATCAGCAGCATAACGTTGACTACTTTT
TTGGCCACGCATGATAGCACAATAGATAACTATTTTTGAGCTCCTTCTTT
TCTCCATCTTTTTCTTAGACATAAAAGGCTGAGGGGTATATTACCGGAAA
GGATTCTTACAGGTCTTGGTAAATATTTTCGATAGAAATGGAGAAATTGG
TGCTAAATTCATGTGCCAAATTCATCTAGTGCGTCAGTCAATGCTTCTGT
TGAACATGAAATTTCTATTGAGGACGAACTGCAGTAACTCTCGTTTACTT
CCTTAGGAGTTGTCTGTGGAGTACGAAGAACGAAAAGGAACTTATGAAAC
AACTGCTGCTGGCCTCGAAAGCAACATGTCTAAACTTGACCAGGTAAATG
ATCGATGTGTAATACTTTGGAGATTACAATGTTGGATACGGGAATATAAG
ATATAAAAACTTTCTCTTGTAAAGTATTTCAACGCAAAGTAAAAGCAACT
TGTTGGCAAAGGATTTTTTAATCGTTCTCTTAGAACTTCTATAGAACAAG
CAGTTTTTAGGTAGTAAATGAGACCTTTTGTTCGAAATACTAATTTTCTT
CGCTGTAGGAGGTTAAAGCACTTCGCGAAGAGGTTTTGGCGGAAGAAAGT
CGTTACCATTACATGGAATCCATGATCGAGGTATCCTTTCTTTtcttact
ttcatttttatcggTAGGACACATTCAGGGCACGAACTGAAAATCGAAAT
AATCACTATACAGTCGACTCTTTCCAATTCGATCTTCGCAAATATTCTTT
ATTCGaatcaaacaaagattcttaTTATGGTAATGCTTTGACGGCTGACA
GGACCATTCTTTATGGCTTTGATTACGAAGGCTTTTGAATAATGGAGGGT
TGACTGAACGTGCCTTTGACCATGCGAAATTCACTGCAAGGGTCACGTAA
AGATATAGAGGAATGGGCTCTAATTCTAACTTCTTTCACAAAACTTTCCT
TGACTCCTTTCAGTGACTGAGGCAATAAAAACAGTCGTGTTTATTTTGTA
CTCGAAGATCAATTTTACCTTGCCTGTTATAGGTATTGGAGGTCCAACAA
CAGCGTATCGACGAAGAAATTAAATCTTATGTCAACACTGATGGTTCCAA
GAAATCTCTCAGGTAGAATTATTTGTAGCTGTTAAATCAGATTTCATTGG
ACCAAGTAAAGTTTTTTGGTTTAAAATAATTTCCTTGCTGATAGTCGGTT
GATTTTATCGAGCCTCGTTGCCCTAAATTTATGATGGGTGAAAAAATCCT
AACAATAGCTACAACCGCTTTTTTAGTAGCAAATTGTTTGACACGTTGGT
ATCTTCCATCGATTATTTTTATCCTTTAACTTCTCCTACAGGGATAAATA
TTCACAGAGGATTCATGAACAAGAAGTATTGGGAAAGGTCAGTTTGCTTC
TCCTNAAATATTCACAGAGGATTCACGAACAAGAAGTATTGGGAAAGGTC
AGTTTGCTTCTCCTTCCTTCTTTCTTTCTCACTCTCCAAACTTTCGATCC
TTAACTCAAAAGAGTAATTTTTGGCTGAGActcgactgttcttattttca
ggcttaaatgttcttaacattttattcATTAGTTGGTCTAAATTCAATTT
CCGTGGTCATTTTTGAGATTTCCTTTATTTGTCCTTAAGCCAACCATGTC
TTACGAAACCTTTCATTAAAAAAGCTTGTACACCTAACTTTAAATGGTGT
AAATGTTCTTTCCCTTTTGCACTGagctaaaaatgttgaaatggTGTTGG
TGTATTTTGCTGTTATAAGACCAGCGACAGTGCTTATTCATTATTGTTTT
GTTTCAGCAATTACGTGAGAAGCAGAAATATCTCCGAGAAAATCATGCTC
CCAATATGCGCCAAATGAAAATGTGGACTGTAAGTGATATCTAATCTTTA
GATTGATGTAAACTTTATTTCATAAAGATCATGAATCTAACAAAACAAAG
CACAAATCTAGCGAAACATTCCTTACATTCTACAAATAATATAGCTGCTT
TTTTGGTAGTGATCTTTAAACTCATTGCAATTTGTCCATCCAATTATCCT
TAAAATTAATATGTTCGCGAATACCAATTATAAAGGGGTACGCGAAAAAG
GCACACAAATTGGTAGGACTAAGGTATATCGGatggacaaaataaaatga
GTTTCGTAAAAGCCTCTGTGGTTTTCGAAAAGGTCTACATGATTTTGACT
ACTCAAGCATGATGACAAATAAGCACTAGATGACTTCAAACAATGTGCTT
GATCGTATCATCTAACGAGAGTTTCAATGCTCtgttattttcaacttttt
gtttcCAGGATCTGACGCAACTGTTGAAGTGCAAGAAAGAAAGCTTGAGC
GGACCAACAACAAACACGGTTGAAGATCCGGCTCTGTACGATGAACAAGA
CCATctcgttctgtaaaatacatgcACTTGAGGTTTTTAATACAAGGCCA
TCTTGAATTCTTTTATTTCACACGCTATAagacttttttcgaaaaatgac
gACCATACGCTTCTTTTTGTAATCAgtcaaattgtaaattttttttgatt
tcatttttaactgtaaattttttggtttaatttaTATATTGTAACATCAA
GTTTTTGTTCATTGTGCACActataaaagataaaaaaatatatcagcAAA
CAAGATTAAAACGTGTCAGTTCTCACCTGAACGAAGTCTAAacataagca
taaattaaggctgaaaatgagattttgttaAGCATACTcttgggtgccta
ataaacgtacagaccaaaataaacgtacaggaggg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035284	XLOC_035284	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_267	supercontig	scaffold_267:1799..5533 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.989561	0	0	0	11.1383	8.36604	7.0016	9.35551	12.6282	11.3789	5.02942	7.34522	5.90767	3.85567	1.36713	0.503482	0.937837	1.37334	1.84465	1.22839	0	0	0	0	22.3137	18.5483	0	0	0	0

Blast

[Close]

BLAST of TCONS_00056060 vs. Swiss-Prot (Human)
Match: IFT81 (Intraflagellar transport protein 81 homolog OS=Homo sapiens GN=IFT81 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 4.848e-67
Identity = 114/206 (55.34%), Postives = 160/206 (77.67%), Query Frame = 1

Query:    7 NLEAKHGVSGFHDAQEELEKVSTMKGELDEKKGKTLEEMSQLVVQLTNSISEKKNSLAPVIKELRPLRQQAQELSVEYEERKGTYETTAAGLESNMSKLDQEVKALREEVLAEESRYHYMESMIEVLEVQQQRIDEEIKSYVNTDG--SKKSLRDKYSQRIHEQEVLGKQLREKQKYLRENHAPNMRQMKMWTDLTQLLKCKKESL 618
             +E K G+SG+   QEELE+VS +K E+DE KG+TL++MS++V +L + +SEKK++LA VIKELR LRQ+ QEL+ E +E+K  Y++ AAGLESN SKL+QEV+ LREE L EESRYHY   MI+ LEVQ +R  +E+K+Y+++D    +K++R++Y++   EQE LGK+LREKQK +RE+H PNM+Q KMW DL QL++CKK+  
Sbjct:  448 TMEEKKGISGYSYTQEELERVSALKSEVDEMKGRTLDDMSEMVKKLYSLVSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREECLQEESRYHYTNCMIKNLEVQLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQENLGKKLREKQKVIRESHGPNMKQAKMWRDLEQLMECKKQCF 653

The following BLAST results are available for this feature:

BLAST of TCONS_00056060 vs. Swiss-Prot (Human)

BLAST of TCONS_00056060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IFT81	4.848e-67	55.34	Intraflagellar transport protein 81 homolog OS=Hom...	[more]

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TCONS_00056060 (transcript) - C. hemisphaerica