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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056071 ID=TCONS_00056071|Name=TCONS_00056071|organism=Clytia hemisphaerica|type=transcript|length=917bp
AAAAAACCCACGCATATCAACAATTTGTTTAATTGAGCTAATTGCATTAT
GATGCGTTCATACAGTAGTAAGACAACTTTCGTAGTGAAGGAGGAAATTT
AAAGTTGTTGTCTTATAAAAGCAACTAAGTGCAACTTACCTGTCAGCTAT
TTGAAAAACTAAATCACAGAGGAAAAATGATTGAGCCTCCACCACCATAC
GAagtctttgaaaatgaaaaagcagAAGAAGATGACCATTCAAATCGCCA
AAGCAGCCAGCCAACACCTttcattttgttaaaaaataaagactTTTTTG
TTCGTTCGACATCCATTTTCATCGTGGTTAATACAACCTTTTTGACGATA
AATTGGGTAATGATTGTAATTTTGCGATGGAAGCTTGGAGATTCTGATGG
AAGTTTATCAGCGTTCAGCAGTGAGTCGTCCATGTACATGGCTGGAAATC
TGATTTTGTGGATTTCCAACATTCTCTTCATCTTGGCTAACGTGACAGAA
ATCTCCAACAGATTGAAGGGTGGAGATATCAACATTCACAAAATCATGAT
TGGAATATGTGTTCTTTGCAGCTTTCTAGTCTTAGTTGGATGTCTTTGGG
GAATAGCTTCCATGACTCGACCGTTCTTCCAATTTCGTTCCGATTCTGAA
ATGGACGAGTACAGAGGATTGTGGACTTGCATGATTATTGGTCTTGTGAC
AAGTGTTTTGTCAGCCATGCAAGCTTTCCTTCATTATCGTTTGGATGATA
ACGAGATGATTGGATTGGTGGGAGTGTTCCCCTGTTTTGTAGTGTTTGTT
CCCTTATGGGAACGGTGTAAAGTCgactttgaaaaaaagaagatgagAAA
TGAAGAAAGAATTAACGATTTGTAAAacaatactttattttttaccTAAG
TGAACCTTTAATTCAAG Run BLAST on NCBI protein sequence of TCONS_00056071-protein >TCONS_00056071-protein ID=TCONS_00056071-protein|Name=TCONS_00056071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MIEPPPPYEVFENEKAEEDDHSNRQSSQPTPFILLKNKDFFVRSTSIFIV
VNTTFLTINWVMIVILRWKLGDSDGSLSAFSSESSMYMAGNLILWISNIL
FILANVTEISNRLKGGDINIHKIMIGICVLCSFLVLVGCLWGIASMTRPF
FQFRSDSEMDEYRGLWTCMIIGLVTSVLSAMQAFLHYRLDDNEMIGLVGV
FPCFVVFVPLWERCKVDFEKKKMRNEERINDL Run BLAST on NCBI transcript from alignment at scaffold_267:55618..58875+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056071 ID=TCONS_00056071|Name=TCONS_00056071|organism=Clytia hemisphaerica|type=transcript|length=3258bp|location=Sequence derived from alignment at scaffold_267:55618..58875+ (Clytia hemisphaerica)
AAAAAACCCACGCATATCAACAATTTGTTTAATTGAGCTAATTGCATTAT
GATGCGTTCATACAGTAGTAAGACAACTTTCGTAGTGAAGGAGGAAATTT
AAAGTTGTTGTCTTATAAAAGCAACTAAGTGCAACTTACCTGTCAGCTAT
TTGAAAAACTAAATCACAGAGGAAAAATGATTGAGCCTCCACCACCATAC
GAagtctttgaaaatgaaaaagcagAAGAAGATGACCATTCAAATCGCCA
AAGCAGCCAGCCAACACCTttcattttgttaaaaaataaagactTTTTTG
TTCGTTCGACATCCATTTTCATCGTGGTTAATACAGTAAGTTCTCGATTT
CAATCGACAAAAGACATACATTTTTTGCTGACATGGACTTATTCTTTCAT
AGTTCTAAAGCTTTTGTAACCGTTTTAATTCAAACTAAAAGTTTGATGGT
TTAGTTTCAATTCTTCTCCCTTTAATGTCTTATGACATCTCCTTTTCAAC
CAAAATGGCAAGGTTGGATTCACATTAGTGATTTAAACCATCCCGTGAGG
GAGGCGGGGGAGTCAGGCAAATTGAACGACGGCtttgtgcggcggttaag
ggtatgtttcaAAATAGcagtaataaaataaaaacgtaAAAGAACCATAG
ATAACTGGAAAGAAAGAGCAAGCTGTAAATTAGAGGTGAAAAATAAGCAA
TCAATAACTAAAGTAGTGCAGAGCAAAAGTGTCTGGACTGTTTCTGAGTC
TTTATCTAGAATAGAGAGCTATAGATCAGGTTCATTGACAGCCTAAATAA
CCAGAGTTGGCATTTTGTCCAAAGACCCATTCTCTGAACTGAATTCCAAA
ATAAGCCTAATTTAGGTGGTCACtatgctaaaatgtcaaaaaagttttta
gtacatgtgtactaaaattacttttccaaaaattaggtggggtatgtcaa
aaatcatCTAAAAAACTTTTAGTACTCATACGTGTCTTGGATTTTAGTAA
CGACCCCTTCTGGTAAGGGTGaacttttgataaatataaattgaataaat
ctgcgctgtaagggtgcgattctaaaagctaATTtctttcgccgcacata
ccgtcagttggtaaaccaaCTGCCCCCTAACCGGTTAACCCTTTCTCTTC
TGTTTTCAGACCTTTTTGACGATAAATTGGGTAATGATTGTAATTTTGCG
ATGGAAGCTTGGAGATTCTGATGGAAGTTTATCAGCGTTCAGCAGTGAGT
CGTCCATGTACATGGCTGGAAATCTGATTTTGTGGATTTCCAACATTCTC
TTCATCTTGGCTAACGTGACAGAAATCTCCAACAGATTGAAGGGTGGAGA
TATCAACATTCACAAAATCGTGAGTAAACCTACACTACCCAGGTTTCTCA
AACTTCACATCAAGGAATTTAAATAAAGAATTTGCACCTTAAAGCTGGCT
ATCGGTCTGTGTTTTTATTtgctttgttttcaaaaaatttgaaaagcttA
AGTGCCTGGTGatatttttaaggattttaatgACCAATCATTCAAATTCT
TTGTTCGAATCAATAATCAATAATCTTAACCTCAGTGAGAAAACGAGCTT
GTGAGCATTGAGGAACTTCCGATTTTTCCGATACATTGCTTacgatttga
aaatatttggatttaaACAATGCTACAATCAGCACAATAATATGTTGGCG
GTAAGCCTTGAAATACCCCTTCGGAACTTTTATTTCACTCCCCCAGaccc
ctaaaatcaaattcAGCAAATCCAACCATTGAAGTTAGGTAACtgggaat
ttctcaaaaacgcATGAAAATCACTGtttaatgtcaaatattttggcact
gattgtagtaaCGTAAAATCTAAAAGTAatctattttttaattttagttt
ttccCTACTATTCTTTGATTTTAGATGATTGGAATATGTGTTCTTTGCAG
CTTTCTAGTCTTAGTTGGATGTCTTTGGGGAATAGCTTCCATGACTCGAC
CGTTCTTCCAATTTCGTTCCGATTCTGAAATGGACGAGTACAGAGGATTG
TGGACTTGCATGGTATATTACATTTTTCTCATTTCAAAGCACACCCGGTA
TAGTATATTATGTTTCTTGTTCACCATTTGGTCTTTCTAAATCGATTTGC
ATTCTCAAAATGAGTATACGGTGAGTCCTCTTGTACGCATAAGGTCCGAT
GTACGTGCCTAAAAAAATATCGTCCCAAAAAAAGGGCGAGAAGGGTATCT
CTCAACTTACTACTAGTGGTACAGCTTCCTTCTTGTCATGTGGGTTCATT
TGACAAGAAACCACGGCTGGTTATGCTGGTACATACCCGGGGGGCACTAG
GTTTGCgggatgacgggtatgtgccggccgACTTTTGGCGGTCGGGCCCT
TATGGGGACCGAAACGGACCCTCGGAGGGACTTAGATGGATTAAAAAACC
CGAATTGTGAATTTTGTGACCCTTATTGGAACTATTTTATAGAAATTTAG
CCCCCCCCCAATCTAGGCTTTTCAGGGTACGATATTGAATTTGAGCTGGT
TCGTGCAACCCTTAGGGACCCTCCCCGGGGTACATACTAACACCCATGTC
TCAGTGGCCCGGTGAAATCTTAAAATACACCAGGGAGGGAGTGGCTATGA
AAAAAGATTcactttcaacatttttatttaaagcGTTTGGTTTTTATAGA
ATTCACTTACTGATGTATATTCTTCATTGTGCTCTAATTGATGCAATTTT
TCGAGAGATAACGCTCTGTACTGTGTACAGACATGCACGATAAAATTCTT
ATGTATAGTTTGTTTCTACAACTTAATTTCAGAGAAAGTTAAGCTGTAGT
GTTCATGCGTACAGGTTACTGAAAAAAGATTTAGTTAAGTGCAGGTTATA
TATGTTTTGCTATTTCAAGATTTCCGGTGTTATGTATGATTTAAACCGAT
CCTCTGAAGCGAATATTTTAAATACAATATTTCCTCTCAAACTagtaaaa
aacttttgttttctttctgaaCAGATTATTGGTCTTGTGACAAGTGTTTT
GTCAGCCATGCAAGCTTTCCTTCATTATCGTTTGGATGATAACGAGATGA
TTGGATTGGTGGGAGTGTTCCCCTGTTTTGTAGTGTTTGTTCCCTTATGG
GAACGGTGTAAAGTCgactttgaaaaaaagaagatgagAAATGAAGAAAG
AATTAACGATTTGTAAAacaatactttattttttaccTAAGTGAACCTTT
AATTCAAG Coding sequence (CDS) from alignment at scaffold_267:55618..58875+ >TCONS_00056071 ID=TCONS_00056071|Name=TCONS_00056071|organism=Clytia hemisphaerica|type=CDS|length=2796bp|location=Sequence derived from alignment at scaffold_267:55618..58875+ (Clytia hemisphaerica)
ATGATTGAGCCTCCACCACCATACGAagtctttgaaaatgaaaaagcagA
AGAAGATGACCATTCAAATCGCCAAAGCAGCCAGCCAACACCTttcattt
tgttaaaaaataaagactTTTTTGTTCGTTCGACATCCATTTTCATCGTG
GTTAATACAACCTTTTTGACGATAAATTGGGTAATGATTGTAATTTTGCG
ATGGAAGCTTGGAGATTCTGATGGAAGTTTATCAGCGTTCAGCAGTGAGT
CGTCCATGTACATGGCTGGAAATCTGATTTTGTGGATTTCCAACATTCTC
TTCATCTTGGCTAACGTGACAGAAATCTCCAACAGATTGAAGGGTGGAGA
TATCAACATTCACAAAATCATGATTGGAATATGTGTTCTTTGCAGCTTTC
TAGTCTTAGTTGGATGTCTTTGGGGAATAGCTTCCATGACTCGACCGTTC
TTCCAATTTCGTTCCGATTCTGAAATGGACGAGTACAGAGGATTGTGGAC
TTGCATGATTATTGGTCTTGTGACAAGTGTTTTGTCAGCCATGCAAGCTT
TCCTTCATTATCGTTTGGATGATAACGAGATGATTGGATTGGTGGGAGTG
TTCCCCTGTTTTGTAGTGTTTGTTCCCTTATGGGAACGGTGTAAAGTCga
ctttgaaaaaaagaagatgagAAATGAAGAAAGAATTAACGATTTGTAAA
TGATTGAGCCTCCACCACCATACGAagtctttgaaaatgaaaaagcagAA
GAAGATGACCATTCAAATCGCCAAAGCAGCCAGCCAACACCTttcatttt
gttaaaaaataaagactTTTTTGTTCGTTCGACATCCATTTTCATCGTGG
TTAATACAACCTTTTTGACGATAAATTGGGTAATGATTGTAATTTTGCGA
TGGAAGCTTGGAGATTCTGATGGAAGTTTATCAGCGTTCAGCAGTGAGTC
GTCCATGTACATGGCTGGAAATCTGATTTTGTGGATTTCCAACATTCTCT
TCATCTTGGCTAACGTGACAGAAATCTCCAACAGATTGAAGGGTGGAGAT
ATCAACATTCACAAAATCATGATTGGAATATGTGTTCTTTGCAGCTTTCT
AGTCTTAGTTGGATGTCTTTGGGGAATAGCTTCCATGACTCGACCGTTCT
TCCAATTTCGTTCCGATTCTGAAATGGACGAGTACAGAGGATTGTGGACT
TGCATGATTATTGGTCTTGTGACAAGTGTTTTGTCAGCCATGCAAGCTTT
CCTTCATTATCGTTTGGATGATAACGAGATGATTGGATTGGTGGGAGTGT
TCCCCTGTTTTGTAGTGTTTGTTCCCTTATGGGAACGGTGTAAAGTCgac
tttgaaaaaaagaagatgagAAATGAAGAAAGAATTAACGATTTGTAAAT
GATTGAGCCTCCACCACCATACGAagtctttgaaaatgaaaaagcagAAG
AAGATGACCATTCAAATCGCCAAAGCAGCCAGCCAACACCTttcattttg
ttaaaaaataaagactTTTTTGTTCGTTCGACATCCATTTTCATCGTGGT
TAATACAACCTTTTTGACGATAAATTGGGTAATGATTGTAATTTTGCGAT
GGAAGCTTGGAGATTCTGATGGAAGTTTATCAGCGTTCAGCAGTGAGTCG
TCCATGTACATGGCTGGAAATCTGATTTTGTGGATTTCCAACATTCTCTT
CATCTTGGCTAACGTGACAGAAATCTCCAACAGATTGAAGGGTGGAGATA
TCAACATTCACAAAATCATGATTGGAATATGTGTTCTTTGCAGCTTTCTA
GTCTTAGTTGGATGTCTTTGGGGAATAGCTTCCATGACTCGACCGTTCTT
CCAATTTCGTTCCGATTCTGAAATGGACGAGTACAGAGGATTGTGGACTT
GCATGATTATTGGTCTTGTGACAAGTGTTTTGTCAGCCATGCAAGCTTTC
CTTCATTATCGTTTGGATGATAACGAGATGATTGGATTGGTGGGAGTGTT
CCCCTGTTTTGTAGTGTTTGTTCCCTTATGGGAACGGTGTAAAGTCgact
ttgaaaaaaagaagatgagAAATGAAGAAAGAATTAACGATTTGTAAATG
ATTGAGCCTCCACCACCATACGAagtctttgaaaatgaaaaagcagAAGA
AGATGACCATTCAAATCGCCAAAGCAGCCAGCCAACACCTttcattttgt
taaaaaataaagactTTTTTGTTCGTTCGACATCCATTTTCATCGTGGTT
AATACAACCTTTTTGACGATAAATTGGGTAATGATTGTAATTTTGCGATG
GAAGCTTGGAGATTCTGATGGAAGTTTATCAGCGTTCAGCAGTGAGTCGT
CCATGTACATGGCTGGAAATCTGATTTTGTGGATTTCCAACATTCTCTTC
ATCTTGGCTAACGTGACAGAAATCTCCAACAGATTGAAGGGTGGAGATAT
CAACATTCACAAAATCATGATTGGAATATGTGTTCTTTGCAGCTTTCTAG
TCTTAGTTGGATGTCTTTGGGGAATAGCTTCCATGACTCGACCGTTCTTC
CAATTTCGTTCCGATTCTGAAATGGACGAGTACAGAGGATTGTGGACTTG
CATGATTATTGGTCTTGTGACAAGTGTTTTGTCAGCCATGCAAGCTTTCC
TTCATTATCGTTTGGATGATAACGAGATGATTGGATTGGTGGGAGTGTTC
CCCTGTTTTGTAGTGTTTGTTCCCTTATGGGAACGGTGTAAAGTCgactt
tgaaaaaaagaagatgagAAATGAAGAAAGAATTAACGATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056071-exon-scaffold_267-1491911889:55618..55952 | TCONS_00056071-exon-scaffold_267-1491911889:55618..55952 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1510915933:55618..55952 | TCONS_00056071-exon-scaffold_267-1510915933:55618..55952 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1575043694:55618..55952 | TCONS_00056071-exon-scaffold_267-1575043694:55618..55952 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1491911889:56777..56986 | TCONS_00056071-exon-scaffold_267-1491911889:56777..56986 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1510915933:56777..56986 | TCONS_00056071-exon-scaffold_267-1510915933:56777..56986 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1575043694:56777..56986 | TCONS_00056071-exon-scaffold_267-1575043694:56777..56986 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1491911889:57542..57679 | TCONS_00056071-exon-scaffold_267-1491911889:57542..57679 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1510915933:57542..57679 | TCONS_00056071-exon-scaffold_267-1510915933:57542..57679 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1575043694:57542..57679 | TCONS_00056071-exon-scaffold_267-1575043694:57542..57679 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1491911889:58642..58875 | TCONS_00056071-exon-scaffold_267-1491911889:58642..58875 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1510915933:58642..58875 | TCONS_00056071-exon-scaffold_267-1510915933:58642..58875 | Clytia hemisphaerica | exon |
| TCONS_00056071-exon-scaffold_267-1575043694:58642..58875 | TCONS_00056071-exon-scaffold_267-1575043694:58642..58875 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:55618..58875 + |
Blast
The following BLAST results are available for this feature:
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