TCONS_00056097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056097
Unique NameTCONS_00056097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056097 ID=TCONS_00056097|Name=TCONS_00056097|organism=Clytia hemisphaerica|type=transcript|length=1325bp
CCGAAATTTCATTCCGGGCGTTACAAAAAAAAGCAGGTCTGGGACATGAT
TCAAAAAAAACTGAAGTCAACAATAAAACCTGGAAATCCAGTACCCACTG
CCGTCCAGTGCAAATACAAATGGCGTGCAATGAGTAAAGCATATAACAaC
GTGATCACAAACAACCGGAAGAAGTCAGGCGCCGCTAGAATAACATGTAA
ATACTATGAAGAATTGAACCGAATCCTTGGAACAAAACCCAATGTTGACC
CTCATGACCTGGTTGGTAACGTGGATGATGATCTTAATGATTACGATGAT
GATGTAACCGTTCCGGAAGCTGAAGCTATTGCCGAGAAATCAGTAGTGGA
ACAgccaaagaaaaagagaaagtacACCTCATCAGTCCAGACAAGTACGC
AAAATTTAATGTCTTGAATGGACGATTGGgccaagaaagaagaaaagaaa
gaagaagagagAGAGAGACGCCAGGAGAATAGGTTGGATAGGTTGGAGGC
ACTAGCCcaagaaaaaaatgacattctACGAGATATTTTAGTTGAACTGA
GAAACAACAATTGATTTTAATTGCTTATTGTCTACACTaaatattaattt
tcttttttcaataatatatCCGTTTACGTTAAGAAATATTGTATATACAT
AATTCACTTAAATTTCAATTAAAGTTTattgttaaatgaaaaaacTTGTT
TATAAGGCAACTAATACTCAAAAACTAATACTCAAAATATAAATCTTCTG
CTATTTTGTCACGGTATGCCTTATAGTCTTCAATCGTAGCCCCTGCTGCA
ACAACATGAATTCTTTTGTCATCTTCGTCTTCCTCGTCCTCCtcaatttc
aacaaaagaattatcctcttttgaaaatatacaaaaattatgTAGGATTG
CGCATGTGTAAATGATTTTGTTGATGTTAGTGATCTTTTCCATTTCAATG
TGCTTCAATCTTCAATGCTTCTTTCCCTTTAACAGACCAAACGCGCGTTC
AATTACCACTCTTGTCGATGACACGACGTAGTTATAGCGCCTCTGTACAC
CAGTGAAACCACCCAAATCTTTATATGGTGTCAAGAGGGTTGTGGAAGGG
GTAAGCGCAATCGCCTAAAATGTAGGATCCATTGGGACACATGTCAGGAT
TCTATTGGCTTCTTTATCGATACATGCGTGCCGTCGACTGCTCCAATAAC
TTTCGGCAAACCCCTCACACCAAAAGACTTCATTATTTCCTTTGCCTCGT
CCTGTGTGGGCCACTTGATGAGGCCTTTCAAATTGTTGATGATGGAATTC
ATAACACGTTCGACGCATACTTGGG
Run BLAST on NCBI

protein sequence of TCONS_00056097-protein

>TCONS_00056097-protein ID=TCONS_00056097-protein|Name=TCONS_00056097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
PKFHSGRYKKKQVWDMIQKKLKSTIKPGNPVPTAVQCKYKWRAMSKAYNN
VITNNRKKSGAARITCKYYEELNRILGTKPNVDPHDLVGNVDDDLNDYDD
DVTVPEAEAIAEKSVVEQPKKKRKYTSSVQTSTQNLMS
Run BLAST on NCBI

transcript from alignment at scaffold_267:505106..506659-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056097 ID=TCONS_00056097|Name=TCONS_00056097|organism=Clytia hemisphaerica|type=transcript|length=1554bp|location=Sequence derived from alignment at scaffold_267:505106..506659- (Clytia hemisphaerica)
CCGAAATTTCATTCCGGGCGTTACAAAAAAAAGCAGGTCTGGGACATGAT
TCAAAAAAAACTGAAGTCAACAATAAAACCTGGAAATCCAGTACCCACTG
CCGTCCAGTGCAAATACAAATGGCGTGCAATGAGTAAAGCATATAACAAG
TAAAATATTTATATTATTTTAACTACATCTACATGTTTGTTCTTTTCTAT
AAGCATAACGTTTATAAGCATACACAGACACATAAAAGGGCAGACACTTG
CTTAAAATATCTTTTTTACCTGCCCTACGGAAGGATCCCGCATAAGTGTA
TTCAGTGCAACAGTTGTTGACGAAAGTGTATGTAGATACTTTACTTCTAA
TATGACAACCGAAATCTTTCTCTTTAAGCGTGATCACAAACAACCGGAAG
AAGTCAGGCGCCGCTAGAATAACATGTAAATACTATGAAGAATTGAACCG
AATCCTTGGAACAAAACCCAATGTTGACCCTCATGACCTGGTTGGTAACG
TGGATGATGATCTTAATGATTACGATGATGATGTAACCGTTCCGGAAGCT
GAAGCTATTGCCGAGAAATCAGTAGTGGAACAGCCAAAGAAAAAGAGAAA
GTACACCTCATCAGTCCAGACAAGTACGCAAAATTTAATGTCTTGAATGG
ACGATTGGGCCAAGAAAGAAGAAAAGAAAGAAGAAGAGAGAGAGAGACGC
CAGGAGAATAGGTTGGATAGGTTGGAGGCACTAGCCCAAGAAAAAAATGA
CATTCTACGAGATATTTTAGTTGAACTGAGAAACAACAATTGATTTTAAT
TGCTTATTGTCTACACTAAATATTAATTTTCTTTTTTCAATAATATATCC
GTTTACGTTAAGAAATATTGTATATACATAATTCACTTAAATTTCAATTA
AAGTTTATTGTTAAATGAAAAAACTTGTTTATAAGGCAACTAATACTCAA
AAACTAATACTCAAAATATAAATCTTCTGCTATTTTGTCACGGTATGCCT
TATAGTCTTCAATCGTAGCCCCTGCTGCAACAACATGAATTCTTTTGTCA
TCTTCGTCTTCCTCGTCCTCCTCAATTTCAACAAAAGAATTATCCTCTTT
TGAAAATATACAAAAATTATGTAGGATTGCGCATGTGTAAATGATTTTGT
TGATGTTAGTGATCTTTTCCATTTCAATGTGCTTCAATCTTCAATGCTTC
TTTCCCTTTAACAGACCAAACGCGCGTTCAATTACCACTCTTGTCGATGA
CACGACGTAGTTATAGCGCCTCTGTACACCAGTGAAACCACCCAAATCTT
TATATGGTGTCAAGAGGGTTGTGGAAGGGGTAAGCGCAATCGCCTAAAAT
GTAGGATCCATTGGGACACATGTCAGGATTCTATTGGCTTCTTTATCGAT
ACATGCGTGCCGTCGACTGCTCCAATAACTTTCGGCAAACCCCTCACACC
AAAAGACTTCATTATTTCCTTTGCCTCGTCCTGTGTGGGCCACTTGATGA
GGCCTTTCAAATTGTTGATGATGGAATTCATAACACGTTCGACGCATACT
TGGG

Coding sequence (CDS) from alignment at scaffold_267:505106..506659-

>TCONS_00056097 ID=TCONS_00056097|Name=TCONS_00056097|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_267:505106..506659- (Clytia hemisphaerica)
CGTGATCACAAACAACCGGAAGAAGTCAGGCGCCGCTAGAATAACATGTA
AATACTATGAAGAATTGAACCGAATCCTTGGAACAAAACCCAATGTTGAC
CCTCATGACCTGGTTGGTAACGTGGATGATGATCTTAATGATTACGATGA
TGATGTAACCGTTCCGGAAGCTGAAGCTATTGCCGAGAAATCAGTAGTGG
AACAGCCAAAGAAAAAGAGAAAGTACACCTCATCAGTCCAGACAAGTACG
CAAAATTTAATGTCTTGACCGAAATTTCATTCCGGGCGTTACAAAAAAAA
GCAGGTCTGGGACATGATTCAAAAAAAACTGAAGTCAACAATAAAACCTG
GAAATCCAGTACCCACTGCCGTCCAGTGCAAATACAAATGGCGTGCAATG
AGTAAAGCATATAACAACGTGATCACAAACAACCGGAAGAAGTCAGGCGC
CGCTAGAATAACATGTAAATACTATGAAGAATTGAACCGAATCCTTGGAA
CAAAACCCAATGTTGACCCTCATGACCTGGTTGGTAACGTGGATGATGAT
CTTAATGATTACGATGATGATGTAACCGTTCCGGAAGCTGAAGCTATTGC
CGAGAAATCAGTAGTGGAACAGCCAAAGAAAAAGAGAAAGTACACCTCAT
CAGTCCAGACAAGTACGCAAAATTTAATGTCTTGACCGAAATTTCATTCC
GGGCGTTACAAAAAAAAGCAGGTCTGGGACATGATTCAAAAAAAACTGAA
GTCAACAATAAAACCTGGAAATCCAGTACCCACTGCCGTCCAGTGCAAAT
ACAAATGGCGTGCAATGAGTAAAGCATATAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035302XLOC_035302Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056097-proteinTCONS_00056097-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056097-exon-scaffold_267-1575043694:506511..506659TCONS_00056097-exon-scaffold_267-1575043694:506511..506659Clytia hemisphaericaexon
TCONS_00056097-exon-scaffold_267-1575043694:505106..506281TCONS_00056097-exon-scaffold_267-1575043694:505106..506281Clytia hemisphaericaexon
TCONS_00056097-exon-scaffold_267-1510915933:506511..506659TCONS_00056097-exon-scaffold_267-1510915933:506511..506659Clytia hemisphaericaexon
TCONS_00056097-exon-scaffold_267-1510915933:505106..506281TCONS_00056097-exon-scaffold_267-1510915933:505106..506281Clytia hemisphaericaexon
TCONS_00056097-exon-scaffold_267-1491911889:506511..506659TCONS_00056097-exon-scaffold_267-1491911889:506511..506659Clytia hemisphaericaexon
TCONS_00056097-exon-scaffold_267-1491911889:505106..506281TCONS_00056097-exon-scaffold_267-1491911889:505106..506281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:505106..506659 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.310003	0.206997	0.457793	0.771673	0.745294	0.899166	0.841788	0.394285	0.45337	0.0953297	0.338961	0	0	0	0	0	0	3.71631e-05	0.428089	0	0	0.328049	0.206262	0.770674	0.517848	0.00316589	0	0	0.217615
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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