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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056105 ID=TCONS_00056105|Name=TCONS_00056105|organism=Clytia hemisphaerica|type=transcript|length=3325bpRun BLAST on NCBI protein sequence of TCONS_00056105-protein >TCONS_00056105-protein ID=TCONS_00056105-protein|Name=TCONS_00056105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp MLLVISFIACTISTIQSYPTKQSHVPYFHKERPKGGFLGDPYIDPRKNFKRun BLAST on NCBI transcript from alignment at scaffold_267:562100..584068- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056105 ID=TCONS_00056105|Name=TCONS_00056105|organism=Clytia hemisphaerica|type=transcript|length=21969bp|location=Sequence derived from alignment at scaffold_267:562100..584068- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_267:562100..584068- >TCONS_00056105 ID=TCONS_00056105|Name=TCONS_00056105|organism=Clytia hemisphaerica|type=CDS|length=13419bp|location=Sequence derived from alignment at scaffold_267:562100..584068- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056105 vs. Swiss-Prot (Human)
Match: TSSP (Thymus-specific serine protease OS=Homo sapiens GN=PRSS16 PE=2 SV=2) HSP 1 Score: 259.61 bits (662), Expect = 3.402e-75 Identity = 158/465 (33.98%), Postives = 242/465 (52.04%), Query Frame = 3
Query: 1221 AAEPQ--WYTQQLNHFDDQDTRTWQQKYYVNATQF-GENGPVFLMIGGEGPLSARWVGVGSMVEMAKEHKALVLALEHRYYGDSHPTSDTSVENLKYLSSEQALADLATFRASMVEQFALSDKNKWISFGGSYPGALSAWFRYKYPHLVHGAVASSAPINAQTDFPEYLEVSTDSL------GTQECKDSVQAATTSVEKYVQT-EAGRKMLTDLFHLCEPLSDDPNDISQFTSSMAGNFFGVIQYNKDNRAFEGATGTNITVDTLCNIM---------SLPIFGDEMHRYAKINEIMMETYKQTCISPNYKKFIEEMKVTDWK-SVEGGRQWTYQTCTEFGYYQSSDSKSQVYGTTFPLSFWTKQCVDIFGANFNETSINRAVDWTNDNYGGYNMNQPRIVFPNGSIDPWHALSFTDD-HKDMIAVFIKGTAHCANMYPSSEDDSQELQDARQKIHDLVGKWLQ 2552
AA P+ W Q L+ F+ D R++ Q+Y+VN + G++GP+FL +GGEG L V G +A ALV++LEHR+YG S P + L++LSS ALAD+ + R ++ F +S + WI FGGSY G+L+AW R K+PHL+ +VASSAP+ A DF EY +V + SL G+ EC+ +V A VE+ +++ A + L C PL N ++ ++ GV+QY+ G TG ++V LC ++ S P G + +I++ + Q C+S + + + +++ T+ + S G RQW YQTCTEFG+Y + ++ + L C +FG + S+ +AV TN YGG +++F NG DPWH LS T + I+ +HC +M P DS L+ RQ I + WL+
Sbjct: 54 AALPKVGWLEQLLDPFNVSDRRSFLQRYWVNDQHWVGQDGPIFLHLGGEGSLGPGSVMRGHPAALAPAWGALVISLEHRFYGLSIPAGGLEMAQLRFLSSRLALADVVSARLALSRLFNISSSSPWICFGGSYAGSLAAWARLKFPHLIFASVASSAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSVAFAEVERRLRSGGAAQAALRTELSACGPLGRAENQ-AELLGALQALVGGVVQYD-------GQTGAPLSVRQLCGLLLGGGGNRSHSTPYCG-----LRRAVQIVLHSLGQKCLSFSRAETVAQLRSTEPQLSGVGDRQWLYQTCTEFGFYVTCENPRCPFSQLPALPSQLDLCEQVFG--LSALSVAQAVAQTNSYYGGQTPGANKVLFVNGDTDPWHVLSVTQALGSSESTLLIRTGSHCLDMAPERPSDSPSLRLGRQNIFQQLQTWLK 503 The following BLAST results are available for this feature:
BLAST of TCONS_00056105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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