TCONS_00056117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056117
Unique NameTCONS_00056117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056117 ID=TCONS_00056117|Name=TCONS_00056117|organism=Clytia hemisphaerica|type=transcript|length=591bp
CCTTCAGCTGAAACAAAATGATAGCTTTTTTCTGAGAAAGGAAGATAATT
TTTTGTGCCTTCCACcacataagtttgttttgatttttttcccgtCAAAA
GTCATGTGATATTTTTATCTCGATCACTCCGCCTCAACTGGAAATTCCCC
TATGCACCCTAAAAGTGAttgagttttagaaaaacaataacaaaccgtgt
tatgtggtggcggattgccCCTTTAATAACGCCCACGCCTCTCCCGATTG
ATTTGTGCAGTGAGGCGGAACTCTTGTCTATAGTGTAAAACCTTTAGTCA
GGATTAATCAATGTGCGATTTTTATTGAGGAAATTTAACTCACCATGTGG
TGCATGTTCTGGACTGTTTTGGTTGTCAACTCGACGGAATTGGAAACTTT
CTCTCTGGTTATTttcaaacagctttaaaatgactttcagggatcttttt
cctaaggatttttgaaatttttggatgcaatattcttttttttttttctc
ctaaaAGTGCCATACAGTGTGCTGGTGATTAAGGAAGCATTGATCACCAA
CAGTGTGAGTAAACAACAGTGCTTGATCACTAAAGAGGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_267:71559..72149

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056117 ID=TCONS_00056117|Name=TCONS_00056117|organism=Clytia hemisphaerica|type=transcript|length=591bp|location=Sequence derived from alignment at scaffold_267:71559..72149 (Clytia hemisphaerica)
GTACCTCTTTAGTGATCAAGCACTGTTGTTTACTCACACTGTTGGTGATC
AATGCTTCCTTAATCACCAGCACACTGTATGGCACTtttaggagaaaaaa
aaaaaagaatattgcatccaaaaatttcaaaaatccttaggaaaaagatc
cctgaaagtcattttaaagctgtttgaaAATAACCAGAGAGAAAGTTTCC
AATTCCGTCGAGTTGACAACCAAAACAGTCCAGAACATGCACCACATGGT
GAGTTAAATTTCCTCAATAAAAATCGCACATTGATTAATCCTGACTAAAG
GTTTTACACTATAGACAAGAGTTCCGCCTCACTGCACAAATCAATCGGGA
GAGGCGTGGGCGTTATTAAAGGggcaatccgccaccacataacacggttt
gttattgtttttctaaaactcaaTCACTTTTAGGGTGCATAGGGGAATTT
CCAGTTGAGGCGGAGTGATCGAGATAAAAATATCACATGACTTTTGacgg
gaaaaaaatcaaaacaaacttatgtgGTGGAAGGCACAAAAAATTATCTT
CCTTTCTCAGAAAAAAGCTATCATTTTGTTTCAGCTGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035319XLOC_035319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056117-exon-scaffold_267-1491911889:71559..72149TCONS_00056117-exon-scaffold_267-1491911889:71559..72149Clytia hemisphaericaexon
TCONS_00056117-exon-scaffold_267-1510915933:71559..72149TCONS_00056117-exon-scaffold_267-1510915933:71559..72149Clytia hemisphaericaexon
TCONS_00056117-exon-scaffold_267-1575043694:71559..72149TCONS_00056117-exon-scaffold_267-1575043694:71559..72149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:71559..72149 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.96063	5.66569	6.14075	5.25582	85.3623	62.207	36.3634	47.5403	34.3185	30.5939	31.5386	32.2539	34.839	31.3615	25.9925	20.3174	24.3004	18.5222	25.0582	46.7173	46.0793	46.2914	18.2613	25.7286	15.5142	20.8587	83.9147	66.8908	55.4601	50.7152
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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