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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056121 ID=TCONS_00056121|Name=TCONS_00056121|organism=Clytia hemisphaerica|type=transcript|length=1780bp
ttctttgttgcaaaacaaaggaaattgaatagaaaacaagagtCGCCCGG
CTTTAAAGCAGTTGCGTGCAACCTCctctattttctatctctttggATTG
ACCAAGATCCGGATCGCCTTTTGAATGGCTAAGTCCTGACTGCGTTCTTT
ATTTACATCGCTCAAACCTCAGGGTCTCTCGAAAGAGAAGGTACTTGAAA
AAGCAAAACTTCATCCTATGCCCAGTAATTGCAACTTAGAAGTTAGGCAT
GTTAACCCTGAGATTTGGGCTGATATTATGAACCCAAAAGACCGCAGTCA
GGACTTAGCCATTCAaaaggctcaaaaattaaaCACAAAGGTCAGTTATg
caattctaaaaatagcagaCCGTGCCTTAGCAGCGAGGAAAACTAAGGAC
AAAGTTCTCAAACAGCGTGCATTGAGGCAGATTGTCCAATATTCAACCGA
TGCACTCGCTTTTACTACAACTGCTAACGTTCACGTGGAAAAGATGAGAA
GAGAGTTCATTGTGCATAGAATGGCACATGACCAACGTAACATCGGCAGA
AAGGTCAATCCGACTGACTCACTTCTTTTCGGTGACAACCTGGCTAAAAG
TATCCAAGAAGCTGCGGGTACTGCCAAACTTAAACTTAAAAGTTCATTTC
AATCTTATCCAAAAAACCAACATTGGTCGCGGAAAAACCCCCGCGACCAG
AAAAATCAAGggtcaaaataacaaaaataccaatacaaaaaaatcaaaga
gaaGGTACCGCAAGAAATCAAAGGATACCTCCTCCAAGAAGAGCGACTAT
AGGTAAATACCTACAACGATATAAACATTTCTGAACTTCTTGAGGaagtt
aaaaatgttaaaaatggtAATATTAAAGGGAAGCTAAATGAGTGGGTGAG
GATTACTTCAGATTCTTTTATTCTGGACATTGTCAAAAAAGGGTACTATT
AGAATTTTTTGATGGCATTGTCCCCATACaaacaagctttccaaaaattc
GTTACTCTTCAGAGGAAAGACTTATTTTGGAATCAGAAGTAAATACACTC
CTTTCCAAAGATATCATCTGCAAATCCACTAAAAAGCCAGGTGATTTCAT
AGTCATCTATTTCATCATCATCAAGGTAATCCTGTTTCAATTCATTAAAA
TTGAAATCTGAATCAGAAGAATCTGATAAGTCTGCCTCTGAGGATGAGTG
TCCAACCAATTCGTTAACTTTTTGTTCCATGTCGAACTGAGTTGGAATAG
ATATGGCATCCACAGGAGTATCTGATTTactaaaaacattttccatCCTA
AGTTTTTTGTGTGATTCTGAAATATGAAAATCAGTTTTGCGTTTCTTCCC
TGTTGAAGAAATAGTAGAAGTTGATACAGTATgttttgatgatgatgatt
tggCTCTATCCCCTGCGCTATTCCCCAGCTCCCCATAGACATTGGTTCTG
GGAGTGTGGGTACTAGATACATTGTCATTGGACTTAGTACCAGGCATCAA
AGGGAGGGAAGGACTAACACCCTGGGTTTTACCCTTAGTGGCGAGAGGGA
ATGTGTCATTAGACGTACCCTTGCCCTTCATGGAGATCTTCGGTACCAGT
AGTGGGCTTGCGTCATTGGACCTGTCCTTGGTCGAAGAATGTCTGGCCTT
TTTACGTTCTTTAACAACCATTCTCCGATCAGTACTGTGTTGAGGGTTGA
CCTCAATGGTTTTGCATTGTTCTTTCTGAAATTTTAAgaattgtgaaaat
aaaaaagtttcatgTGAAAAAGGATCATTG Run BLAST on NCBI protein sequence of TCONS_00056121-protein >TCONS_00056121-protein ID=TCONS_00056121-protein|Name=TCONS_00056121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
NDPFSHETFLFSQFLKFQKEQCKTIEVNPQHSTDRRMVVKERKKARHSST
KDRSNDASPLLVPKISMKGKGTSNDTFPLATKGKTQGVSPSLPLMPGTKS
NDNVSSTHTPRTNVYGELGNSAGDRAKSSSSKHTVSTSTISSTGKKRKTD
FHISESHKKLRMENVFSKSDTPVDAISIPTQFDMEQKVNELVGHSSSEAD
LSDSSDSDFNFNELKQDYLDDDEIDDYEITWLFSGFADDIFGKECIYF Run BLAST on NCBI transcript from alignment at scaffold_267:213635..215414 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056121 ID=TCONS_00056121|Name=TCONS_00056121|organism=Clytia hemisphaerica|type=transcript|length=1780bp|location=Sequence derived from alignment at scaffold_267:213635..215414 (Clytia hemisphaerica)
CAATGATCCTTTTTCAcatgaaacttttttattttcacaattcTTAAAAT
TTCAGAAAGAACAATGCAAAACCATTGAGGTCAACCCTCAACACAGTACT
GATCGGAGAATGGTTGTTAAAGAACGTAAAAAGGCCAGACATTCTTCGAC
CAAGGACAGGTCCAATGACGCAAGCCCACTACTGGTACCGAAGATCTCCA
TGAAGGGCAAGGGTACGTCTAATGACACATTCCCTCTCGCCACTAAGGGT
AAAACCCAGGGTGTTAGTCCTTCCCTCCCTTTGATGCCTGGTACTAAGTC
CAATGACAATGTATCTAGTACCCACACTCCCAGAACCAATGTCTATGGGG
AGCTGGGGAATAGCGCAGGGGATAGAGccaaatcatcatcatcaaaacAT
ACTGTATCAACTTCTACTATTTCTTCAACAGGGAAGAAACGCAAAACTGA
TTTTCATATTTCAGAATCACACAAAAAACTTAGGatggaaaatgttttta
gtAAATCAGATACTCCTGTGGATGCCATATCTATTCCAACTCAGTTCGAC
ATGGAACAAAAAGTTAACGAATTGGTTGGACACTCATCCTCAGAGGCAGA
CTTATCAGATTCTTCTGATTCAGATTTCAATTTTAATGAATTGAAACAGG
ATTACCTTGATGATGATGAAATAGATGACTATGAAATCACCTGGCTTTTT
AGTGGATTTGCAGATGATATCTTTGGAAAGGAGTGTATTTACTTCTGATT
CCAAAATAAGTCTTTCCTCTGAAGAGTAACgaatttttggaaagcttgtt
tGTATGGGGACAATGCCATCAAAAAATTCTAATAGTACCCTTTTTTGACA
ATGTCCAGAATAAAAGAATCTGAAGTAATCCTCACCCACTCATTTAGCTT
CCCTTTAATATTaccatttttaacatttttaacttCCTCAAGAAGTTCAG
AAATGTTTATATCGTTGTAGGTATTTACCTATAGTCGCTCTTCTTGGAGG
AGGTATCCTTTGATTTCTTGCGGTACCttctctttgatttttttgtattg
gtatttttgttattttgaccCTTGATTTTTCTGGTCGCGGGGGTTTTTCC
GCGACCAATGTTGGTTTTTTGGATAAGATTGAAATGAACTTTTAAGTTTA
AGTTTGGCAGTACCCGCAGCTTCTTGGATACTTTTAGCCAGGTTGTCACC
GAAAAGAAGTGAGTCAGTCGGATTGACCTTTCTGCCGATGTTACGTTGGT
CATGTGCCATTCTATGCACAATGAACTCTCTTCTCATCTTTTCCACGTGA
ACGTTAGCAGTTGTAGTAAAAGCGAGTGCATCGGTTGAATATTGGACAAT
CTGCCTCAATGCACGCTGTTTGAGAACTTTGTCCTTAGTTTTCCTCGCTG
CTAAGGCACGGtctgctatttttagaattgcATAACTGACCTTTGTGttt
aatttttgagcctttTGAATGGCTAAGTCCTGACTGCGGTCTTTTGGGTT
CATAATATCAGCCCAAATCTCAGGGTTAACATGCCTAACTTCTAAGTTGC
AATTACTGGGCATAGGATGAAGTTTTGCTTTTTCAAGTACCTTCTCTTTC
GAGAGACCCTGAGGTTTGAGCGATGTAAATAAAGAACGCAGTCAGGACTT
AGCCATTCAAAAGGCGATCCGGATCTTGGTCAATccaaagagatagaaaa
tagagGAGGTTGCACGCAACTGCTTTAAAGCCGGGCGactcttgttttct
attcaatttcctttgttttgcaacaaagaa Coding sequence (CDS) from alignment at scaffold_267:213635..215414 >TCONS_00056121 ID=TCONS_00056121|Name=TCONS_00056121|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_267:213635..215414 (Clytia hemisphaerica)
AATGATCCTTTTTCAcatgaaacttttttattttcacaattcTTAAAATT
TCAGAAAGAACAATGCAAAACCATTGAGGTCAACCCTCAACACAGTACTG
ATCGGAGAATGGTTGTTAAAGAACGTAAAAAGGCCAGACATTCTTCGACC
AAGGACAGGTCCAATGACGCAAGCCCACTACTGGTACCGAAGATCTCCAT
GAAGGGCAAGGGTACGTCTAATGACACATTCCCTCTCGCCACTAAGGGTA
AAACCCAGGGTGTTAGTCCTTCCCTCCCTTTGATGCCTGGTACTAAGTCC
AATGACAATGTATCTAGTACCCACACTCCCAGAACCAATGTCTATGGGGA
GCTGGGGAATAGCGCAGGGGATAGAGccaaatcatcatcatcaaaacATA
CTGTATCAACTTCTACTATTTCTTCAACAGGGAAGAAACGCAAAACTGAT
TTTCATATTTCAGAATCACACAAAAAACTTAGGatggaaaatgtttttag
tAAATCAGATACTCCTGTGGATGCCATATCTATTCCAACTCAGTTCGACA
TGGAACAAAAAGTTAACGAATTGGTTGGACACTCATCCTCAGAGGCAGAC
TTATCAGATTCTTCTGATTCAGATTTCAATTTTAATGAATTGAAACAGGA
TTACCTTGATGATGATGAAATAGATGACTATGAAATCACCTGGCTTTTTA
GTGGATTTGCAGATGATATCTTTGGAAAGGAGTGTATTTACTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056121-exon-scaffold_267-1491911889:213635..215414 | TCONS_00056121-exon-scaffold_267-1491911889:213635..215414 | Clytia hemisphaerica | exon |
| TCONS_00056121-exon-scaffold_267-1510915933:213635..215414 | TCONS_00056121-exon-scaffold_267-1510915933:213635..215414 | Clytia hemisphaerica | exon |
| TCONS_00056121-exon-scaffold_267-1575043694:213635..215414 | TCONS_00056121-exon-scaffold_267-1575043694:213635..215414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:213635..215414 . |
Blast
The following BLAST results are available for this feature:
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