TCONS_00056126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056126
Unique NameTCONS_00056126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056126 ID=TCONS_00056126|Name=TCONS_00056126|organism=Clytia hemisphaerica|type=transcript|length=287bp
ATCCGAAAACCCAGAAAACCAGTGATCTCAATGtaaaatgttgttatttt
cattcACAAATAGAACCAAGATGTGTCTCACTGGTCAGCTTGTCAGAATA
TTGTTTTCGTATAAAAAgcattcaattttttaaattccaaattaccactt
tcacttttcatcatttccacACCATGTATCGCAACAccaaaaatgttata
taaatACCATACTTTCCATCTTAATTTTTGAGGATTTCTGTAGCCATTTC
AGAGTTACATTCTCTGGGATAAGGTTATCAAGTTTAN
Run BLAST on NCBI

transcript from alignment at scaffold_267:318075..318361

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056126 ID=TCONS_00056126|Name=TCONS_00056126|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at scaffold_267:318075..318361 (Clytia hemisphaerica)
NTAAACTTGATAACCTTATCCCAGAGAATGTAACTCTGAAATGGCTACAG
AAATCCTCAAAAATTAAGATGGAAAGTATGGTatttatataacatttttg
gTGTTGCGATACATGGTgtggaaatgatgaaaagtgaaagtggtaatttg
gaatttaaaaaattgaatgcTTTTTATACGAAAACAATATTCTGACAAGC
TGACCAGTGAGACACATCTTGGTTCTATTTGTgaatgaaaataacaacat
tttaCATTGAGATCACTGGTTTTCTGGGTTTTCGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035328XLOC_035328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056126-exon-scaffold_267-1491911889:318075..318361TCONS_00056126-exon-scaffold_267-1491911889:318075..318361Clytia hemisphaericaexon
TCONS_00056126-exon-scaffold_267-1510915933:318075..318361TCONS_00056126-exon-scaffold_267-1510915933:318075..318361Clytia hemisphaericaexon
TCONS_00056126-exon-scaffold_267-1575043694:318075..318361TCONS_00056126-exon-scaffold_267-1575043694:318075..318361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:318075..318361 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88194	0.996373	3.20871	1.37936	3.38621	0	3.0581	1.53476	0.619196	0	0	1.14421	1.04558	1.83204	0.94832	0	0	0.737928	0	0	3.55683	0.135831	3.3275	2.27331	0	0	2.62475	0.683226	4.08032	0.331075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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