TCONS_00056142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056142
Unique NameTCONS_00056142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056142 ID=TCONS_00056142|Name=TCONS_00056142|organism=Clytia hemisphaerica|type=transcript|length=318bp
GCGGTTACACCTTGTACGATCCAGAAATTGCAACAGCAGATGAActtcaa
caaaatgaaaatgaaagatatttttgtgCAGGAAATCTGAACGAAACTGC
TTTCACCAACTTTTTCGATGCACACAAGTGTAATATTTACTGTAGGCTTC
TCGGATTAAAAGAAGTGGAATTGGAGGATCCATCAGTAAATCCATAAAGG
ACTGTCTGTCGAAAACATTAATTTATTGGCATTGTTGCTGGCTTTtctgt
ttgtttgaaaatttgctaccttaagggaacttattttggcgagtactaat
tttggcgaaattggCGAN
Run BLAST on NCBI

transcript from alignment at scaffold_267:674287..674604

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056142 ID=TCONS_00056142|Name=TCONS_00056142|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at scaffold_267:674287..674604 (Clytia hemisphaerica)
NTCGccaatttcgccaaaattagtactcgccaaaataagttcccttaagg
tagcaaattttcaaacaaacagaAAAGCCAGCAACAATGCCAATAAATTA
ATGTTTTCGACAGACAGTCCTTTATGGATTTACTGATGGATCCTCCAATT
CCACTTCTTTTAATCCGAGAAGCCTACAGTAAATATTACACTTGTGTGCA
TCGAAAAAGTTGGTGAAAGCAGTTTCGTTCAGATTTCCTGcacaaaaata
tctttcattttcattttgttgaagTTCATCTGCTGTTGCAATTTCTGGAT
CGTACAAGGTGTAACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035344XLOC_035344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056142-exon-scaffold_267-1491911889:674287..674604TCONS_00056142-exon-scaffold_267-1491911889:674287..674604Clytia hemisphaericaexon
TCONS_00056142-exon-scaffold_267-1510915933:674287..674604TCONS_00056142-exon-scaffold_267-1510915933:674287..674604Clytia hemisphaericaexon
TCONS_00056142-exon-scaffold_267-1575043694:674287..674604TCONS_00056142-exon-scaffold_267-1575043694:674287..674604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:674287..674604 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16863	1.17412	0.519001	0	21.8031	10.0531	8.32644	9.4007	3.28082	4.23261	6.40403	2.69904	3.75402	1.17064	0.36816	0	0.266258	0.951251	2.92846	0	0	0.282297	1.671	0.62646	3.0101	9.59647	3.22395	1.61367	0.739101	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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