TCONS_00056146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056146
Unique NameTCONS_00056146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056146 ID=TCONS_00056146|Name=TCONS_00056146|organism=Clytia hemisphaerica|type=transcript|length=405bp
GTGAGGACCAATGGACCCAATCGATTTTCTTATAGTTAAAGTCACCTATA
AGACATATATGAGTGTATTTAGGATTTAGGCAGAGATCTTTTATGAGCTT
ATTCATGTTCTTGTTATTTTCATCGAAGATGTTTGTTTCAGTTTCTGTCG
GGCTTCTATAAAGACATCCGAGTAACATGGTGTCTTTGTTCTCCATTGCA
ATTTCTAACAGAAAAGTctcttcaaattcaactttcgTTTGTATTTGTAG
GATGAGGTGATCAATAGACTTGTGGACTAGAATGATGATTCCTCTCTTTT
TTTGTATTCCTATGTTAGTTTTATATGGTGTAGAATAATTCTCAATTGAG
TAGTCTTGATCTTTTCTCTCAGAGATTCGTTTGGTGTTGACTTCGGTGAT
CGCAA
Run BLAST on NCBI

protein sequence of TCONS_00056146-protein

>TCONS_00056146-protein ID=TCONS_00056146-protein|Name=TCONS_00056146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
AITEVNTKRISERKDQDYSIENYSTPYKTNIGIQKKRGIIILVHKSIDHL
ILQIQTKVEFEETFLLEIAMENKDTMLLGCLYRSPTETETNIFDENNKNM
NKLIKDLCLNPKYTHICLIGDFNYKKIDWVHWSS
Run BLAST on NCBI

transcript from alignment at scaffold_267:719516..719920

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056146 ID=TCONS_00056146|Name=TCONS_00056146|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at scaffold_267:719516..719920 (Clytia hemisphaerica)
TTGCGATCACCGAAGTCAACACCAAACGAATCTCTGAGAGAAAAGATCAA
GACTACTCAATTGAGAATTATTCTACACCATATAAAACTAACATAGGAAT
ACAAAAAAAGAGAGGAATCATCATTCTAGTCCACAAGTCTATTGATCACC
TCATCCTACAAATACAAAcgaaagttgaatttgaagagACTTTTCTGTTA
GAAATTGCAATGGAGAACAAAGACACCATGTTACTCGGATGTCTTTATAG
AAGCCCGACAGAAACTGAAACAAACATCTTCGATGAAAATAACAAGAACA
TGAATAAGCTCATAAAAGATCTCTGCCTAAATCCTAAATACACTCATATA
TGTCTTATAGGTGACTTTAACTATAAGAAAATCGATTGGGTCCATTGGTC
CTCAC

Coding sequence (CDS) from alignment at scaffold_267:719516..719920

>TCONS_00056146 ID=TCONS_00056146|Name=TCONS_00056146|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_267:719516..719920 (Clytia hemisphaerica)
GCGATCACCGAAGTCAACACCAAACGAATCTCTGAGAGAAAAGATCAAGA
CTACTCAATTGAGAATTATTCTACACCATATAAAACTAACATAGGAATAC
AAAAAAAGAGAGGAATCATCATTCTAGTCCACAAGTCTATTGATCACCTC
ATCCTACAAATACAAAcgaaagttgaatttgaagagACTTTTCTGTTAGA
AATTGCAATGGAGAACAAAGACACCATGTTACTCGGATGTCTTTATAGAA
GCCCGACAGAAACTGAAACAAACATCTTCGATGAAAATAACAAGAACATG
AATAAGCTCATAAAAGATCTCTGCCTAAATCCTAAATACACTCATATATG
TCTTATAGGTGACTTTAACTATAAGAAAATCGATTGGGTCCATTGGTCCT
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035348XLOC_035348Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056146-proteinTCONS_00056146-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056146-exon-scaffold_267-1491911889:719516..719920TCONS_00056146-exon-scaffold_267-1491911889:719516..719920Clytia hemisphaericaexon
TCONS_00056146-exon-scaffold_267-1510915933:719516..719920TCONS_00056146-exon-scaffold_267-1510915933:719516..719920Clytia hemisphaericaexon
TCONS_00056146-exon-scaffold_267-1575043694:719516..719920TCONS_00056146-exon-scaffold_267-1575043694:719516..719920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:719516..719920 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.14768	0.725461	2.8943	1.90125	0.244101	0.192892	0.232716	0.871462	0.193418	0.377873	0.550159	0.891522	0.877243	1.09475	0.380086	0.176567	0.407648	0.391558	0.4191	0.778693	1.33114	0	0.415082	0.46062	0.777365	1.38756	41.3517	47.4981	7.35519	8.69558
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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