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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056152 ID=TCONS_00056152|Name=TCONS_00056152|organism=Clytia hemisphaerica|type=transcript|length=1783bpRun BLAST on NCBI protein sequence of TCONS_00056152-protein >TCONS_00056152-protein ID=TCONS_00056152-protein|Name=TCONS_00056152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp KMTYFKKLLQSLSKTIQRGDLGEYGQHYMIAPMTNEEVINVQTCFTLNGTRun BLAST on NCBI transcript from alignment at scaffold_268:128730..142376+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056152 ID=TCONS_00056152|Name=TCONS_00056152|organism=Clytia hemisphaerica|type=transcript|length=13647bp|location=Sequence derived from alignment at scaffold_268:128730..142376+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_268:128730..142376+ >TCONS_00056152 ID=TCONS_00056152|Name=TCONS_00056152|organism=Clytia hemisphaerica|type=CDS|length=13149bp|location=Sequence derived from alignment at scaffold_268:128730..142376+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056152 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2) HSP 1 Score: 220.705 bits (561), Expect = 1.458e-65 Identity = 107/222 (48.20%), Postives = 150/222 (67.57%), Query Frame = 2
Query: 797 DLPTQINWRLRGGVTPVKDQAVCGSCWSFGTTGTIEGAVFMKTGHLIRLSQQNLMDCSWGFGNNGCDGGEEFRAYEWIIKHGGIATELNYGQYLGVDSFCHFNQSQAGAVLSGYVNVTSGSEDALKEAIATKGPTSVGIDAAHLSFVFYANGVYYEPKCGNGPDDLDHAVLAAGYG----TLDGEDYWLVKNSWSTHWGNDGYVLMSR-KDNNCGVATAATY 1447
DLP ++WR +G VTPVK+Q CGSCW+F TG +EG +F KTG L+ LS+QNL+DCS GN GC+GG RA++++ ++GG+ +E +Y Y+ VD C + + A +G+ V G E AL +A+AT GP SV +DA H SF FY +G+Y+EP C + +LDH VL GYG + YWLVKNSW WG++GYV +++ K+N+CG+ATAA+Y
Sbjct: 113 DLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESY-PYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSS--KNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASY 331 The following BLAST results are available for this feature:
BLAST of TCONS_00056152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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