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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056164 ID=TCONS_00056164|Name=TCONS_00056164|organism=Clytia hemisphaerica|type=transcript|length=2744bp
GGTCTTGGTAATGAcattgttttcaaatatttcttaccTATCTTTTCGTC
CCAGAAAGTAATGTCCAagatccaaaaatgaaaaatttttgtaaaaattc
ctCCAGCCTATCCATTCCCTCTTATTTTATAGTGTAAACATTGTTAAAAA
AAGGAATAGTTAGAGATGGCATCAACAGATTATACTTCATACATTTTTGC
TATTATTGTTTTGCTTGGAGGTATTATTGGTTATGCAAAGAAAGGAAGTA
TTCCATCTTTGGCAGCTGGTGTTGTGTTTTCAGCTATTCTTGCCTATGGT
GCTTCAAGGTCTTCAGCAAACTCAAGAGATGTAGGAGTCTTGCTAGTGGC
AAGTCTAATTTTGGCATTTGTTATGGGCTCAAGATTTTTCAAGACTGGAA
AATTTATGCCAGCTGGACTTGTTTTCATTCTCAGTGTTGGAAATTTGATT
AGAAATGCATACATCTACAAACAATCATAATAATTTTGCAACTATTTTGT
AACTAGACATTATTTTGTATTTGCATTTTTTACTACTCTATACTGGGGAA
AAGGCTTtcgctcttgttttgaatatcttAAATTTTGTATTTATAGAGGT
GGATAAAATggaagttttttttactttttcgttTATTAAATTTGGCCAAG
AATTTTATTAGCCTATCCTTCTAAAGCGTTAGAGTGCTATAGACAATTTA
TCTACCTAGCACTTAAAAGAAAAGATGTCTATTTATTTTAAGCAGCAGTA
ATTGTCAATTGATGTATGtttattttttaggaaaaaagaaaaaaaagatg
taTTGAATACAAAGAATTGGAACTTTGAAGATGTCATATTCTGTGAAAGG
TCGTGTTGAATTTAAAGACGAGACAGTGATTGTCTTGAAACCTGACCATG
TCTCACTTGGAAAATGTGCATTATGTAATAACTTTGTTCGAAGGTATTCC
TCTGTCAACGATCTAGAAATTGAAAGTATGCTGAAAGATGGATGCGTTTT
TAAAGGTTACAAAAAGGTCAAGACGGTATCTGTTGAGGAAGAGGCATTCT
CCAATATGCATTTTGTTTTGTTGCTGTCGAAATCAAACAGTGATGTCGAC
GATGAGGTTAAACAAGTTTGTATCCGTAGAATCGCCAAAGTTAGAATCCC
AATGGAAGGATTGGGCACCACTCATGAGGTGGTCACCAGTAGCAATGCAT
CCTCGGTCATAATAATCATTGAcaggaaaaacaaaaagattttcctctct
catttcaaaaaacaaactaTGAAACAAATTGTTATACCGATCGACGAACA
ACACAGGGGTCTTTGGAAATTTGAACTTGTATCGGATGTGTTATATATTG
ATAATAGTGAACTGCAATTTGTTAATTTCAACACTGAAGTTCCCTTTTAC
CGTAAAATTCATTTGGGTTATGGTCAAGTTGCTTTATTCTATTCCAACGA
TATGGTGGCACTTGCTCAAAAGAATGGGGAAAAATCGGAATCACCAGAAG
CTGCTACGATTGTATGTGATATGTTGAGGGAAAATATACACCACAAACAA
GTATTGGTTGAAAACGAACTTCTTACTCTTCTGCTAGAAAGTACAATAAG
CGTCTTGCATATCAACAATNTTTGGTTGAAAAGGAACTTCTTACTCTTCT
GCTAGAAAGTACAATAAGCGTCTTACAtatcaacaataaatttatttgGT
TGGTTTTTAATGGTTCTGAAATTAAAGTTTTCAATACGTCTGGTTTTGTT
AATGATTTGATCGAAATCACAACATTGAACGTTTTGGATTTATTTGTAAA
TTGTGATTCAGCTTCTTACAAAGGTGTTTGTTATTGTCGGAACACACAGC
AAGCTTACATTGTGTATGCAAGGACCATTCATGAAGAAGTTTCAAGCTCT
ATTGTTGGTTTAAATTTACAAACCCTCAAAATTTCATGTGTATTAGACTT
GCAATTAACTTTGAACAGAAGGCCTGAGATCAAGATTCACGTATCACCAA
TAGGGCACAAGCTATTTGTCCAAGAAACATTTgatgacaaattgattttc
tttcaagtttttAAACTACTACCTGCAGATTTGAAGCTACAAAATATTAT
AAAGCAGTACATTTGGGAAAACTTATCAGAAGATGCTCTGCTCGATCGTT
TTTTGCCCAAAGATTTAAAAGCAGAACTTGAAGAAGGATTTTAAAGAACA
TCAGTTTTATTATTGGCAATACATTGGAGGGCTCTACCattatatttcaa
aagaaattgacgaaaatttttgacttagATTCATAGTAGAgtttttaaac
ttaaaatttaaaaaagatattttttaaaagaCATGTACCTTTTTAAAAGG
AGTACTTAACTTAGCTTTGTAAATGTAAAAAATAGCTTGGTAATAATTTA
TGATGAAAGTGTTGATAGGATTTGAGGAGTACGAATGAAAGAATTGGCAT
GActtatggtaattttcatttttagagttCTGACAATAAACAAAAATTGC
GAAGGATGGGTGTGTGTGACCTGTGTTCTTCTGAAATCTGTTTATAAGCC
TTCATTATCCATTGCACAATAATGAAATTTAGCAGATAATTTAGTATGAA
TCATAGTGTATGTAAATTATACACTAAAAGTAGAGTTTGTAAATGAGCCT
TCAGAAATCATAATAATCTTTTGTAAATATATACAGTTTTCATTCTTTAC
TTCATATACTTGTAGtgttatttaaaaagaaattttaacaacga Run BLAST on NCBI protein sequence of TCONS_00056164-protein >TCONS_00056164-protein ID=TCONS_00056164-protein|Name=TCONS_00056164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MSYSVKGRVEFKDETVIVLKPDHVSLGKCALCNNFVRRYSSVNDLEIESM
LKDGCVFKGYKKVKTVSVEEEAFSNMHFVLLLSKSNSDVDDEVKQVCIRR
IAKVRIPMEGLGTTHEVVTSSNASSVIIIIDRKNKKIFLSHFKKQTMKQI
VIPIDEQHRGLWKFELVSDVLYIDNSELQFVNFNTEVPFYRKIHLGYGQV
ALFYSNDMVALAQKNGEKSESPEAATIVCDMLRENIHHKQVLVENELLTL
LLESTISVLHINNXWLKRNFLLFC Run BLAST on NCBI transcript from alignment at scaffold_268:82483..86780- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056164 ID=TCONS_00056164|Name=TCONS_00056164|organism=Clytia hemisphaerica|type=transcript|length=4298bp|location=Sequence derived from alignment at scaffold_268:82483..86780- (Clytia hemisphaerica)
GGTCTTGGTAATGACATTGTTTTCAAATATTTCTTACCTATCTTTTCGTC
CCAGAAAGTAATGTCCAAGATCCAAAAATGAAAAATTTTTGTAAAAATTC
CTCCAGCCTATCCATTCCCTCTTATTTTATAGTGTAAACATTGTTAAAAA
AAGGAATAGTTAGAGATGGCATCAACAGATTATACTTCATACATTTTTGC
TATTATTGTTTTGCTTGGAGGTATTATTGGTTATGCAAAGAAAGGTATGT
TGTACATACCTTAAAGTGGATTAGATTTTGGCTGGATGTATTTGCAAAAT
TTTTGATCATTTTCATGATTGGTCCCTGCAAAAAAATTAAAATCCAAGAG
AAACAGGCAAAATTTTGTCAATCCGAAATTTGCAAAAAAAAGCCCACTTG
AAAATTAATCCACATTAAGGTATATATAATGTGCTATAACTGATTGAACT
GCCTTTATGGGTTCCCACTGGTACTGCCACTGTTAGGTCCCAGCTGGTGG
TATGCAGTGCGAGGTAGCGTATCTTGAACAGGATGTTAAATGACATTGTA
AAATTAAATCTTAATAAATACTTCAAGGCAGGGTTTCATTTGCAAGTGTG
TTCTTGTGTCAAAATGAAAAAATATATAAACTAGATATATATAAAAGTAT
TTTATAAGCATCAGTAGTAGCAAGCTTTTTGCTTTGCAATTTCAGAAGGT
ACTGCTTACTAGGTTTTAACATTATCTATGTTTTAGGAAGTATTCCATCT
TTGGCAGCTGGTGTTGTGTTTTCAGCTATTCTTGCCTATGGTGCTTCAAG
GTCTTCAGCAAACTCAAGAGATGTAGGAGTCTTGCTAGGTAGGACATCAA
CAAACCAATCAGTAATTTCCAAGTCATTTAGATTGCCATTTTGATTGTTT
GAATAAAAGAGCAATATAATATTTTCAGTTCTAAAATTGTGTGTCATCTT
ACAGTAGTCAATACTTTGTTACTAAGTAAACATTATCAATATTCGATTTG
CTCTACTTTTAATTTCAGTGGCAAGTCTAATTTTGGCATTTGTTATGGGC
TCAAGATTTTTCAAGACTGGAAAATTTATGCCAGCTGGACTTGTTTTCAT
TCTCAGGTAAACTAATAACTATAATCATGCGAGGTATGTAAAATACGCTT
GAAAATACTAAACTTTTCTCTCTCCATTTGTGTCTTTTTCTATGTTTTNG
TATGTAAAATACGCTTGAAAATACCAAACTTTTCTCTCTCCATTTGTGTC
TTTTTCTATGTTTTGTTTTCTTTTTTCTCTGTCCTCTATTTTGATAAAAT
CAACATCAAAACATTTGAAAAAGAATCGAGTCATAAAAAATGGAAACATT
TCATGATGACTCTTTCTATAACTTGTTGTATATTATGGATTGAAAGAAAA
TTTTTCAGAGCATAGCATTGTACAATTAATAATAATGATATTCATATACT
TTAGGCGTACAAACTTTTGCGGGAAGAAGCTTTTGCGAGGTTGAAAAATC
GCAAAATTTACAACATTTATTTTCGCAAACTAGAGGAAATCGTTGGATAA
AAATGAGAATTTCTGAATGAAAATTGACTTAAAAGTGAAAATTTTCATAA
ATCCGATTAAGGTGGTTGCTCTTCGACTTTAAAACGGCATGAAAGGATAA
TAATATTATGCCAAAATTTGATATTTACTACGATTTCATGGTTTTATAGA
TTTTTTTTGAGAATTTTTCGCGAGCATAAACTTTCGCGAATTGCCCTGTT
AATTTACTTTTGCGAAAAAGGCCAAAATTCGCGAAAATCGCGAAAGTTTC
TGCTCGTGAAAGTTTGTACGCCTTTGTATGCCCAAAACATAAGAAACAAA
ATGAAGGTAGTAAATCCTAATAAGGGGTTTCAAACCATATCTTCTATAAC
TAACTTGCATTAGCTTTTTTTAGATTACTGTTGTGTTGAATTAAGACATG
AAATTAAATGTTGTTTTTATTTTTGTTCTTCGTTTTAGTGTTGGAAATTT
GATTAGAAATGCATACATCTACAAACAATCATAATAATTTTGCAACTATT
TTGTAACTAGACATTATTTTGTATTTGCATTTTTTACTACTCTATACTGG
GGAAAAGGCTTTCGCTCTTGTTTTGAATATCTTAAATTTTGTATTTATAG
AGGTGGATAAAATGGAAGTTTTTTTTACTTTTTCGTTTATTAAATTTGGC
CAAGAATTTTATTAGCCTATCCTTCTAAAGCGTTAGAGTGCTATAGACAA
TTTATCTACCTAGCACTTAAAAGAAAAGATGTCTATTTATTTTAAGCAGC
AGTAATTGTCAATTGATGTATGTTTATTTTTTAGGAAAAAAGAAAAAAAA
GATGTATTGAATACAAAGAATTGGAACTTTGAAGATGTCATATTCTGTGA
AAGGTCGTGTTGAATTTAAAGACGAGACAGTGATTGTCTTGAAACCTGAC
CATGTCTCACTTGGAAAATGTGCATTATGTAATAACTTTGTTCGAAGGTA
TTCCTCTGTCAACGATCTAGAAATTGAAAGTATGCTGAAAGATGGATGCG
TTTTTAAAGGTTACAAAAAGGTCAAGACGGTATCTGTTGAGGAAGAGGCA
TTCTCCAATATGCATTTTGTTTTGTTGCTGTCGAAATCAAACAGTGATGT
CGACGATGAGGTTAAACAAGTTTGTATCCGTAGAATCGCCAAAGTTAGAA
TCCCAATGGAAGGATTGGGCACCACTCATGAGGTGGTCACCAGTAGCAAT
GCATCCTCGGTCATAATAATCATTGACAGGAAAAACAAAAAGATTTTCCT
CTCTCATTTCAAAAAACAAACTATGAAACAAATTGTTATACCGATCGACG
AACAACACAGGGGTCTTTGGAAATTTGAACTTGTATCGGATGTGTTATAT
ATTGATAATAGTGAACTGCAATTTGTTAATTTCAACACTGAAGTTCCCTT
TTACCGTAAAATTCATTTGGGTTATGGTCAAGTTGCTTTATTCTATTCCA
ACGATATGGTGGCACTTGCTCAAAAGAATGGGGAAAAATCGGAATCACCA
GAAGCTGCTACGATTGTATGTGATATGTTGAGGGAAAATATACACCACAA
ACAAGTATTGGTTGAAAACGAACTTCTTACTCTTCTGCTAGAAAGTACAA
TAAGCGTCTTGCATATCAACAATNTTTGGTTGAAAAGGAACTTCTTACTC
TTCTGCTAGAAAGTACAATAAGCGTCTTACATATCAACAATAAATTTATT
TGGTTGGTTTTTAATGGTTCTGAAATTAAAGTTTTCAATACGTCTGGTTT
TGTTAATGATTTGATCGAAATCACAACATTGAACGTTTTGGATTTATTTG
TAAATTGTGATTCAGCTTCTTACAAAGGTGTTTGTTATTGTCGGAACACA
CAGCAAGCTTACATTGTGTATGCAAGGACCATTCATGAAGAAGTTTCAAG
CTCTATTGTTGGTTTAAATTTACAAACCCTCAAAATTTCATGTGTATTAG
ACTTGCAATTAACTTTGAACAGAAGGCCTGAGATCAAGATTCACGTATCA
CCAATAGGGCACAAGCTATTTGTCCAAGAAACATTTGATGACAAATTGAT
TTTCTTTCAAGTTTTTAAACTACTACCTGCAGATTTGAAGCTACAAAATA
TTATAAAGCAGTACATTTGGGAAAACTTATCAGAAGATGCTCTGCTCGAT
CGTTTTTTGCCCAAAGATTTAAAAGCAGAACTTGAAGAAGGATTTTAAAG
AACATCAGTTTTATTATTGGCAATACATTGGAGGGCTCTACCATTATATT
TCAAAAGAAATTGACGAAAATTTTTGACTTAGATTCATAGTAGAGTTTTT
AAACTTAAAATTTAAAAAAGATATTTTTTAAAAGACATGTACCTTTTTAA
AAGGAGTACTTAACTTAGCTTTGTAAATGTAAAAAATAGCTTGGTAATAA
TTTATGATGAAAGTGTTGATAGGATTTGAGGAGTACGAATGAAAGAATTG
GCATGACTTATGGTAATTTTCATTTTTAGAGTTCTGACAATAAACAAAAA
TTGCGAAGGATGGGTGTGTGTGACCTGTGTTCTTCTGAAATCTGTTTATA
AGCCTTCATTATCCATTGCACAATAATGAAATTTAGCAGATAATTTAGTA
TGAATCATAGTGTATGTAAATTATACACTAAAAGTAGAGTTTGTAAATGA
GCCTTCAGAAATCATAATAATCTTTTGTAAATATATACAGTTTTCATTCT
TTACTTCATATACTTGTAGTGTTATTTAAAAAGAAATTTTAACAACGA Coding sequence (CDS) from alignment at scaffold_268:82483..86780- >TCONS_00056164 ID=TCONS_00056164|Name=TCONS_00056164|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_268:82483..86780- (Clytia hemisphaerica)
ATGTCATATTCTGTGAAAGGTCGTGTTGAATTTAAAGACGAGACAGTGAT
TGTCTTGAAACCTGACCATGTCTCACTTGGAAAATGTGCATTATGTAATA
ACTTTGTTCGAAGGTATTCCTCTGTCAACGATCTAGAAATTGAAAGTATG
CTGAAAGATGGATGCGTTTTTAAAGGTTACAAAAAGGTCAAGACGGTATC
TGTTGAGGAAGAGGCATTCTCCAATATGCATTTTGTTTTGTTGCTGTCGA
AATCAAACAGTGATGTCGACGATGAGGTTAAACAAGTTTGTATCCGTAGA
ATCGCCAAAGTTAGAATCCCAATGGAAGGATTGGGCACCACTCATGAGGT
GGTCACCAGTAGCAATGCATCCTCGGTCATAATAATCATTGACAGGAAAA
ACAAAAAGATTTTCCTCTCTCATTTCAAAAAACAAACTATGAAACAAATT
GTTATACCGATCGACGAACAACACAGGGGTCTTTGGAAATTTGAACTTGT
ATCGGATGTGTTATATATTGATAATAGTGAACTGCAATTTGTTAATTTCA
ACACTGAAGTTCCCTTTTACCGTAAAATTCATTTGGGTTATGGTCAAGTT
GCTTTATTCTATTCCAACGATATGGTGGCACTTGCTCAAAAGAATGGGGA
AAAATCGGAATCACCAGAAGCTGCTACGATTGTATGTGATATGTTGAGGG
AAAATATACACCACAAACAAGTATTGGTTGAAAACGAACTTCTTACTCTT
CTGCTAGAAAGTACAATAAGCGTCTTGCATATCAACAATNTTTGGTTGAA
AAGGAACTTCTTACTCTTCTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00056164-exon-scaffold_268-1575043694:86537..86780 | TCONS_00056164-exon-scaffold_268-1575043694:86537..86780 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1575043694:85943..86044 | TCONS_00056164-exon-scaffold_268-1575043694:85943..86044 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1575043694:85675..85762 | TCONS_00056164-exon-scaffold_268-1575043694:85675..85762 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1575043694:82483..84792 | TCONS_00056164-exon-scaffold_268-1575043694:82483..84792 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1510915933:86537..86780 | TCONS_00056164-exon-scaffold_268-1510915933:86537..86780 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1510915933:85943..86044 | TCONS_00056164-exon-scaffold_268-1510915933:85943..86044 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1510915933:85675..85762 | TCONS_00056164-exon-scaffold_268-1510915933:85675..85762 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1510915933:82483..84792 | TCONS_00056164-exon-scaffold_268-1510915933:82483..84792 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1491911889:86537..86780 | TCONS_00056164-exon-scaffold_268-1491911889:86537..86780 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1491911889:85943..86044 | TCONS_00056164-exon-scaffold_268-1491911889:85943..86044 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1491911889:85675..85762 | TCONS_00056164-exon-scaffold_268-1491911889:85675..85762 | Clytia hemisphaerica | exon |
| TCONS_00056164-exon-scaffold_268-1491911889:82483..84792 | TCONS_00056164-exon-scaffold_268-1491911889:82483..84792 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_268 | supercontig | scaffold_268:82483..86780 - |
Blast
BLAST of TCONS_00056164 vs. Swiss-Prot (Human)
Match: TM14C (Transmembrane protein 14C OS=Homo sapiens GN=TMEM14C PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.963e-16 Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 196 FAIIVLLGGIIGYAKKGSIPSLAAGVVFSAILAYGASRSSANSRDVGVLLVASLILAFVMGSRFFKTGKFMPAGLV 423
+A +V GGIIGY K GS+PSLAAG++F ++ GA + S + R+V V L S LA +MG RF+ +GKFMPAGL+
Sbjct: 17 YAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYHSGKFMPAGLI 92
The following BLAST results are available for this feature:
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