TCONS_00056172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056172
Unique NameTCONS_00056172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056172 ID=TCONS_00056172|Name=TCONS_00056172|organism=Clytia hemisphaerica|type=transcript|length=265bp
GAAAGTGCGGAATAGTGTACAAGAACCACTGGATGAACCGATAATCGAGA
TCGTTCTCAGGTAGACAAGACCCTTAATTGTCAACTTGACTAAAACACGG
CAGGAAAATCATTTATTCGCCATCGAAGCGCTAAGAATTATGCACCCGAC
TGTATCCACAGAGATCATATTTATGCAAATATTTTTACTATTCCCctata
tcagtgacccggtcagccCCACTTGATGGATAACCCGGTGAAAGAAATTA
CATAGAACCCAAATC
Run BLAST on NCBI

transcript from alignment at scaffold_268:220707..221740-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056172 ID=TCONS_00056172|Name=TCONS_00056172|organism=Clytia hemisphaerica|type=transcript|length=1034bp|location=Sequence derived from alignment at scaffold_268:220707..221740- (Clytia hemisphaerica)
GAAAGTGCGGAATAGTGTACAAGTAAGTACTCTCGGGTACCTAATAGCTG
GGGAAGGGGGCAGGGCGCTAGTTAATTTTTCGAAAATTTTCCACCCAAGA
CATTTTTTTAACCCCCACCCGCTTATTAAGTTTTGTGATAACGTTAACTG
TAAATTTCTTTACATGTCTAATAAATATTTGATGGGTTTGGTTGTGCTTT
CTATCTAAAGAGCTAAGGTAATGAAGCCCTGAATACNCTTCAAGATGATG
TATAAGAAGTTTCATGCTCGTACAATCAATATTTATTGCAAACGAAAATA
AAAATGGTCAAAAGTGGCCGAAGTCATCTGGACTTACGGTAACACCACCT
TGAAATTCCCTTCCCGCCAAAAGAGGTTAGCGGAAGAATGTGAGTGTAGC
ACGGATTTTGCACAATTCGTCTGAGATGATCTGAGGTTCGTCTCAATAAT
ATATTGTTTTGCATCTGTTATACCTTTATACTGATGTATTTTATGGTCTT
TCTGTTCTTAAAATGTGCATCTGAGACGTCTCAGGGCCCTCAGACTTTTC
GAGATTATCTGAGGTTCGTCTCAATTTTAAAGTCTTTCNACACCTCCACA
CACACCTAAAATCTTTGAGGAGAGTGATTAATCACACGCCATAAATTTGG
ATTTTACTACTTAAAGTTATGCATAGCACTCATTATCACACGCCTGAAGT
ACTTTTTAGGAGTGCGATTCACCACACGCCTGGAATTTTCAAATGACAAA
GACTAATACACCTATTTTTATTAATTCGTTGTCTTTTATAGGAACCACTG
GATGAACCGATAATCGAGATCGTTCTCAGGTAGACAAGACCCTTAATTGT
CAACTTGACTAAAACACGGCAGGAAAATCATTTATTCGCCATCGAAGCGC
TAAGAATTATGCACCCGACTGTATCCACAGAGATCATATTTATGCAAATA
TTTTTACTATTCCCCTATATCAGTGACCCGGTCAGCCCCACTTGATGGAT
AACCCGGTGAAAGAAATTACATAGAACCCAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035364XLOC_035364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056172-exon-scaffold_268-1575043694:221719..221740TCONS_00056172-exon-scaffold_268-1575043694:221719..221740Clytia hemisphaericaexon
TCONS_00056172-exon-scaffold_268-1575043694:220707..220949TCONS_00056172-exon-scaffold_268-1575043694:220707..220949Clytia hemisphaericaexon
TCONS_00056172-exon-scaffold_268-1510915933:221719..221740TCONS_00056172-exon-scaffold_268-1510915933:221719..221740Clytia hemisphaericaexon
TCONS_00056172-exon-scaffold_268-1510915933:220707..220949TCONS_00056172-exon-scaffold_268-1510915933:220707..220949Clytia hemisphaericaexon
TCONS_00056172-exon-scaffold_268-1491911889:221719..221740TCONS_00056172-exon-scaffold_268-1491911889:221719..221740Clytia hemisphaericaexon
TCONS_00056172-exon-scaffold_268-1491911889:220707..220949TCONS_00056172-exon-scaffold_268-1491911889:220707..220949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:220707..221740 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.689804	0	0	0.649227	0	0	0	0	0	0	0	0	0	0	2.85516	0.567702	0	1.15731	0	0	0	0	0	0	0	1.78308	0	0.419466
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top