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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056202 ID=TCONS_00056202|Name=TCONS_00056202|organism=Clytia hemisphaerica|type=transcript|length=2642bp
agggtcagggttgctagtaacggcttgtcactgtgccgggtgcatactcg
gcgccttgggccccgcagggttgctagtaacggctcgaatttcagtcagg
ctaaaagtcgatgtcggaatcagcagtagacaaccttcttttgagacctt
gtaattatcctctcCCGCTTGATCGTCTGCTACGCGAcctggaaaagttt
tgaaaggagGAAAAGGTGCATATTGTTGTATACCCGAATGCAAGAGCAGC
TTTTATAACAGTGACATGACCAAAACTGAAATTGGATTTTTCAAGATCCC
AACTAACCctaaacaaaatcaagaatggAAACGAATCATTTACCGGTATC
GACGAAAGGGAGGAAAAGATAAGTTCAAAATCACATCTTCAACAGTTATC
TgtgaatttcattttaaagcagAGGACATTAAAGTCACCCTTGGAACACA
TAAAAAGGTTTTAAGGAAAGGAGCAATACCAAGagtgttttcttttaaaa
agccgAAAAAAGTAACATCAAGAAAATCACCTAAAAAACGTTTATCCAAA
ATTTTCGACGATCCTGCTTGTAATACGATTCAAAAGGAGCCCGAGAATAG
AAACGTCAATGATATAAACAATGAAGTAAACGAGATCAATGAACTGAAAC
AAAGAATTGAGGAACTTGAACAagaaaatttatctttaaaacTTGAAGTA
GAATTNTATCTCACGTAACGAAAAATCTGCTAGTTCAAATAACAGAGCCA
TTATATGATTGCAATACGAAGAATTGCCTGCAGCACAATCACACGTTCCA
CTGAAAACTTCTCCATTAAGTCTATTTAGAACAACttccaaatgtttttt
tttcttgtatcATGCTCGATCTACATTCAGCTTTGACAGTAAAAAATAGT
GAGGAAGTCTTTGTATACATTTGATCTTTTATAACATATCCttcgttttt
gaattttaaacctTGATCTCTTGTTTTGATGATTGATCGTGCATTTTTGC
CACTCTTTTGTCGATGTAATTCGATCTctctttttgtaaacaaaggaaGA
TTAGTTAAATGTTTAGTCCattcaatgttttgttctttttcaaCAATAAT
TTCAATAGAAGATCTTTCAGTGTTTAGAAGAAGTTCATCCAAAAGCTCTT
GAACAGCACCGCTTTCGTTCGCCATTTTGTATAATGTTTACAAAATATCA
TTGCTGGCCTCGTTTTCATGCCGCGCAAAaacatctcgagaagagtgtat
tactCTCTCATGGCCAGTCTCCACTtccgcgcgctgcgatcgcataTTTT
TTGGCTTTAATCCACTTTTACTTtggcttggaaaaaagattacgtcataa
aaatgtaacgcgcactcgaaaaagtgcgatcgagaAACGCAtgcaagtgg
agaccgacctTTCTCGTCAAACCAATTCTTTGGTGGGTGAAACAATGTGA
GTTCCGGTTCTCGGGCTTTGATGTTCTTGGGAGAAGTTAACGGATTAAcg
cttttcttttctttttatttatgcGTGATAAACGACGGTAAAACGACGAA
ACGACGGAGACAAATAGAGATGTTTCATCAATGAGTCATTATCAACGCAA
ACTTCACTAAGTGTACCACCACCATTCTTGTACAAGCAACCATTGCGTAC
ATACAAAATGTTTGGATGGCTGGGGACAACGTGCGTGTTGCTCAAAAGAA
GAAACTGGAACAACCTTTTTTTATTGATTAACAATAATTTATAGACCATG
TTCAAACCAGTTCAGACGTTACAGTTTCATGTCATATctttcatattggt
ttcggagcaagaaagcggagcagttccgttccgatgaaaatagtggaaca
aaaccgtttcgatctaTTTTGCTTTATATGTAACGTCTTCAAATTTTGGC
GTTCACACGTTCacacggaaccgtaacgtctgaacatggtcttacaaaca
atctttgaaatacatacaattaaaaatatgtaaaattataaattataagG
CTATTTGATCACCAATAACAATGCATTTCCTCTGTTTTCTTCCTGAAGGA
GATAGAAAGTAGAAAGATTAACTAATAGACTACCGTCCTCTATTTTAAAT
CTCTTGTCTATCCACAGCTTTAGTAtccattatgtctgagattatAAAAG
CCcgataaaatattttcaaaagtatcCTTAGATTaaccaatttgaaaaaa
agtcattcCTCTCTCCACGCACCTACGTACGTCGTTAATGCGGAATCACG
TATCTACACAGACCATTTAGAACGCCATAGAAATTACGTCATCATGAAAC
TAAATATCAGATGAGATTGAGCCATTTATATTATGATATTAAAGGTAATA
TACGTCTTACCTGGAAAAACCAACACGTCAGCGTGTTTTGTCATCACAAT
GTAAGactaaaaagaacaaaagaagagagaaaaagcgAGCGGAATGTCAT
GCCTCAAACCTAAACACGGATAAATAGATTGAACATCGAGTGCAGGCTCG
AATTTAAGAATATCGATACGAAACATTGATATGATCAAAGTACAGAATCA
AAAGAAAGACACGACAAATCTTTTACGATAACGGCTAATTACAGTTCACC
ACACTAAAATGTAAATATCTAATTGATTACCTGTTTCGCTAT Run BLAST on NCBI protein sequence of TCONS_00056202-protein >TCONS_00056202-protein ID=TCONS_00056202-protein|Name=TCONS_00056202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MTKTEIGFFKIPTNPKQNQEWKRIIYRYRRKGGKDKFKITSSTVICEFHF
KAEDIKVTLGTHKKVLRKGAIPRVFSFKKPKKVTSRKSPKKRLSKIFDDP
ACNTIQKEPENRNVNDINNEVNEINELKQRIEELEQENLSLKLEVEXYLT Run BLAST on NCBI transcript from alignment at scaffold_269:250441..253314+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056202 ID=TCONS_00056202|Name=TCONS_00056202|organism=Clytia hemisphaerica|type=transcript|length=2874bp|location=Sequence derived from alignment at scaffold_269:250441..253314+ (Clytia hemisphaerica)
agggtcagggttgctagtaacggcttgtcactgtgccgggtgcatactcg
gcgccttgggccccgcagggttgctagtaacggctcgaatttcagtcagg
ctaaaagtcgatgtcggaatcagcagtagacaaccttcttttgagacctt
gtaattatcctctcCCGCTTGATCGTCTGCTACGCGAcctggaaaagttt
tgaaaggagGAAAAGGTGCATATTGTTGTATACCCGAATGCAAGAGCAGC
TTTTATAACAGTGACATGACCAAAACTGAAATTGGATTTTTCAAGATCCC
AACTAACCctaaacaaaatcaagaatggAAACGAATCATTTACCGGTATC
GACGAAAGGGAGGAAAAGATAAGTTCAAAATCACATCTTCAACAGTTATC
TgtgaatttcattttaaagcagAGGACATTAAAGTCACCCTTGGAACACA
TAAAAAGGTTTTAAGGAAAGGAGCAATACCAAGagtgttttcttttaaaa
agccgAAAAAAGTAACATCAAGAAAATCACCTAAAAAACGTTTATCCAAA
ATTTTCGACGATCCTGCTTGTAATACGATTCAAAAGGAGCCCGAGAATAG
AAACGTCAATGATATAAACAATGAAGTAAACGAGATCAATGAACTGAAAC
AAAGAATTGAGGAACTTGAACAagaaaatttatctttaaaacTTGAAGTA
GAATTNTATCTCACGTAACGAAAAATCTGCTAGTTCAAATAACAGAGCCA
TTATATGATTGCAATACGAAGAATTGCCTGCAGCACAATCACACGTTCCA
CTGAAAACTTCTCCATTAAGTCTATTTAGAACAACttccaaatgtttttt
tttcttgtatcATGCTCGATCTACATTCAGCTTTGACAGTAAAAAATAGT
GAGGAAGTCTTTGTATACATTTGATCTTTTATAACATATCCttcgttttt
gaattttaaacctTGATCTCTTGTTTTGATGATTGATCGTGCATTTTTGC
CACTCTTTTGTCGATGTAATTCGATCTctctttttgtaaacaaaggaaGA
TTAGTTAAATGTTTAGTCCattcaatgttttgttctttttcaaCAATAAT
TTCAATAGAAGATCTTTCAGTGTTTAGAAGAAGTTCATCCAAAAGCTCTT
GAACAGCACCGCTTTCGTTCGCCATTTTGTATAATGTTTACAAAATATCA
TTGCTGGCCTCGTTTTCATGCCGCGCAAAaacatctcgagaagagtgtat
tactCTCTCATGGCCAGTCTCCACTtccgcgcgctgcgatcgcataTTTT
TTGGCTTTAATCCACTTTTACTTtggcttggaaaaaagattacgtcataa
aaatgtaacgcgcactcgaaaaagtgcgatcgagaAACGCAtgcaagtgg
agaccgacctTTCTCGTCAAACCAATTCTTTGGTGGGTGAAACAATGTGA
GTTCCGGTTCTCGGGCTTTGATGTTCTTGGGAGAAGTTAACGGATTAAcg
cttttcttttctttttatttatgcGTGATAAACGACGGTAAAACGACGAA
ACGACGGAGACAAATAGAGATGTTTCATCAATGAGTCATTATCAACGCAA
ACTTCACTAAGGTAGGCTTTCAAAGTGCCCAGTAGAAAACTATTCTGTTC
TAGGGTATTAAAGTTATCTAGGTAGGTTTTCCCACTTTTACCTACCTGAA
AATCGTGTgtctttaaatttttaagtACTATTCAATTTGTCTGAGCTGAG
TGAGTAGCTTTGTCAACTGGACGCTATATATTACCTGGGTTTTCGTTTTG
TAACGATACACTATATGCCGAATTTTTTGTTCTATATATTTAGTGTACCA
CCACCATTCTTGTACAAGCAACCATTGCGTACATACAAAATGTTTGGATG
GCTGGGGACAACGTGCGTGTTGCTCAAAAGAAGAAACTGGAACAACCTTT
TTTTATTGATTAACAATAATTTATAGACCATGTTCAAACCAGTTCAGACG
TTACAGTTTCATGTCATATctttcatattggtttcggagcaagaaagcgg
agcagttccgttccgatgaaaatagtggaacaaaaccgtttcgatctaTT
TTGCTTTATATGTAACGTCTTCAAATTTTGGCGTTCACACGTTCacacgg
aaccgtaacgtctgaacatggtcttacaaacaatctttgaaatacataca
attaaaaatatgtaaaattataaattataagGCTATTTGATCACCAATAA
CAATGCATTTCCTCTGTTTTCTTCCTGAAGGAGATAGAAAGTAGAAAGAT
TAACTAATAGACTACCGTCCTCTATTTTAAATCTCTTGTCTATCCACAGC
TTTAGTAtccattatgtctgagattatAAAAGCCcgataaaatattttca
aaagtatcCTTAGATTaaccaatttgaaaaaaagtcattcCTCTCTCCAC
GCACCTACGTACGTCGTTAATGCGGAATCACGTATCTACACAGACCATTT
AGAACGCCATAGAAATTACGTCATCATGAAACTAAATATCAGATGAGATT
GAGCCATTTATATTATGATATTAAAGGTAATATACGTCTTACCTGGAAAA
ACCAACACGTCAGCGTGTTTTGTCATCACAATGTAAGactaaaaagaaca
aaagaagagagaaaaagcgAGCGGAATGTCATGCCTCAAACCTAAACACG
GATAAATAGATTGAACATCGAGTGCAGGCTCGAATTTAAGAATATCGATA
CGAAACATTGATATGATCAAAGTACAGAATCAAAAGAAAGACACGACAAA
TCTTTTACGATAACGGCTAATTACAGTTCACCACACTAAAATGTAAATAT
CTAATTGATTACCTGTTTCGCTAT Coding sequence (CDS) from alignment at scaffold_269:250441..253314+ >TCONS_00056202 ID=TCONS_00056202|Name=TCONS_00056202|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_269:250441..253314+ (Clytia hemisphaerica)
ATGACCAAAACTGAAATTGGATTTTTCAAGATCCCAACTAACCctaaaca
aaatcaagaatggAAACGAATCATTTACCGGTATCGACGAAAGGGAGGAA
AAGATAAGTTCAAAATCACATCTTCAACAGTTATCTgtgaatttcatttt
aaagcagAGGACATTAAAGTCACCCTTGGAACACATAAAAAGGTTTTAAG
GAAAGGAGCAATACCAAGagtgttttcttttaaaaagccgAAAAAAGTAA
CATCAAGAAAATCACCTAAAAAACGTTTATCCAAAATTTTCGACGATCCT
GCTTGTAATACGATTCAAAAGGAGCCCGAGAATAGAAACGTCAATGATAT
AAACAATGAAGTAAACGAGATCAATGAACTGAAACAAAGAATTGAGGAAC
TTGAACAagaaaatttatctttaaaacTTGAAGTAGAATTNTATCTCACG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056202-exon-scaffold_269-1491911889:250441..252051 | TCONS_00056202-exon-scaffold_269-1491911889:250441..252051 | Clytia hemisphaerica | exon |
| TCONS_00056202-exon-scaffold_269-1510915933:250441..252051 | TCONS_00056202-exon-scaffold_269-1510915933:250441..252051 | Clytia hemisphaerica | exon |
| TCONS_00056202-exon-scaffold_269-1575043694:250441..252051 | TCONS_00056202-exon-scaffold_269-1575043694:250441..252051 | Clytia hemisphaerica | exon |
| TCONS_00056202-exon-scaffold_269-1491911889:252284..253314 | TCONS_00056202-exon-scaffold_269-1491911889:252284..253314 | Clytia hemisphaerica | exon |
| TCONS_00056202-exon-scaffold_269-1510915933:252284..253314 | TCONS_00056202-exon-scaffold_269-1510915933:252284..253314 | Clytia hemisphaerica | exon |
| TCONS_00056202-exon-scaffold_269-1575043694:252284..253314 | TCONS_00056202-exon-scaffold_269-1575043694:252284..253314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:250441..253314 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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