TCONS_00056209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056209
Unique NameTCONS_00056209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056209 ID=TCONS_00056209|Name=TCONS_00056209|organism=Clytia hemisphaerica|type=transcript|length=2256bp
TTATAGATAGAGAGAGAAGCTAGACTTGAAATCAACTTTAACATGGAAAA
TGTAAACAATTCAACGCAACTAGAgatctttctttgaaaatttcagcatc
gtccccgtgtattcaaGGCTCCTATAGACTTCAGCGAAAATTATCTGACC
CTAATAGTAAGCCGATAATACTTGGGATCAAGTTTGTGGAAATCTAATCT
GAAAAtgtttgttcttattttaggaGTAAAATTCAAGTTATAGAAAACTC
ATCTTGACAACTGAACCTACCAAGAAAGGAATACGCAAAAATGAAATCAC
AACTGACATTTTTCTCGATAATCACATTGCTGTCAACTACGTCAGATGCC
ATTAACTTTGACGATGCAGAATCGAGATTGCACGAAGATCTGACGAAAGG
TTACAACACAATTATTCGACCCGTAAAGCATCCTTCAGATAAGATCGAAG
TCAAGTTTGATCTCGCTCTACAACAAATTGTAGAAGTTAATGAGAAATCG
GAATCATTAGTGGTCAGTGTATTTTTACGACAATATTGGACGGATGTCAA
GTTGAAATGGAATGTATCCGATTATGGAAATATCTCTTCAACAAAATTCA
AACCTGATTCCATTTGGGTACCAGACCTCATGTTGTATAATAAtGCGGAG
AAGGATGACAACTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAAT
GGTTAATCACGAAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAG
GGAAATGCCCTATGAACATTCGGTATTTTCCTTTCGACACACAAAGTTGT
CGATTCAAATTCGGTTCATGGGCATATCATGGTGATGAAATTGATTTACA
GGCAGCTAGAGATGAAAACACATTTGATTTGGGATCATATTCTGAGCATT
CGGAATGGACAATTAAAGACGCATACCTCAAACGGAACGTTCTTCGTTAT
GGTTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAATTAAAGTTGAA
ACGAAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATGATTTTTA
TTGGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTGAATCGGGTGAA
AGAATTTCGTTTGCTGTCACACTCATGTTGGCTTTGACTGTTTTCATGTT
GATTGTAGCAGAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAATGCTTG
GTATATTTTTCActtgtgttatgatcgaaatgGTTTTGATGGTATTCGCT
ATGTGTTACACATTGAATCTACATTTCAAAGAACCTAATTCCGAAAACCG
TATCGGGAAATGGACACGGGCTATCGTTTACAACCGATTAGCAATCTATC
TCGGTGTACGAAAACGGGAGAAGAAATTCGCTAACGTCAATGGTCACGTT
AAAGCTAACGGGCACGTGAACGGCAATGCGGGTTACGTCAAAGATGAGGT
AGAGGACGTCGCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGAGTCCA
ATCATAATCACGATGAGCCTGACTCCGAATTGGAAAGCACAGCGGCTAGA
CTAATGAAAAAGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAAGAAGA
TAttgagaaaattattaaaaaagaacTTGTTGCTTGTGCGAAAACTTTTG
ATGTGCTTTGCTTGATCATGTTTGCATTTATGTTTGGAATGATCTTGTTG
ATTTATCTGCTTAATACTGATGTTTGATTGGTTGTTGCGATGGGCAAATA
TTAcgtaatcggattaattttcacgagccaaaaaatcacaatattttttg
aattttatttcgtGAATcagtgttttgaaaaatttcgcgagtttcatttt
tgcaaaaaaaggcaaaaatttgcaaaaacgcgaaaatttatccgaTATAA
AAAACACCAAACGACCAGCTGTACTGGTAGACATTGAAACGAAGAATTAA
TCATGAACTCGTAAATGCAAAATATGTAAAAacagtaaaattttaattaa
agtcATATTTTATCTTAAgggattttgaaataaaaacttttcagtattaa
ataataattttttccatATGCTCAAAAGTTATGTTTAAATATATCTTTGA
TTATATAGTAAAATCTATTTTGATATCTACATTATTATGCAATAGTCAAC
GGTTACGTTTATTttctaagaacaaactatacataaACTTACCGAAATAC
CGTGTTCCCATCAAAAATTGGCTGAATCTGGCAATCCcagaaattaagaa
aattta
Run BLAST on NCBI

protein sequence of TCONS_00056209-protein

>TCONS_00056209-protein ID=TCONS_00056209-protein|Name=TCONS_00056209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MKSQLTFFSIITLLSTTSDAINFDDAESRLHEDLTKGYNTIIRPVKHPSD
KIEVKFDLALQQIVEVNEKSESLVVSVFLRQYWTDVKLKWNVSDYGNISS
TKFKPDSIWVPDLMLYNNAEKDDNFGGSLDQLPTRVMVNHEGSVTWLAPA
IITGKCPMNIRYFPFDTQSCRFKFGSWAYHGDEIDLQAARDENTFDLGSY
SEHSEWTIKDAYLKRNVLRYGCCPEPYPDVTVELKLKRKPLFYVLNLLLP
MIFIGVLTLLAFFLPAESGERISFAVTLMLALTVFMLIVAEMIPASSESV
PMLGIFFTCVMIEMVLMVFAMCYTLNLHFKEPNSENRIGKWTRAIVYNRL
AIYLGVRKREKKFANVNGHVKANGHVNGNAGYVKDEVEDVALKENNTVRF
KESNHNHDEPDSELESTAARLMKKSIKMAEDKAREEDIEKIIKKELVACA
KTFDVLCLIMFAFMFGMILLIYLLNTDV
Run BLAST on NCBI

transcript from alignment at scaffold_269:202299..207971-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056209 ID=TCONS_00056209|Name=TCONS_00056209|organism=Clytia hemisphaerica|type=transcript|length=5673bp|location=Sequence derived from alignment at scaffold_269:202299..207971- (Clytia hemisphaerica)
TTATAGATAGAGAGAGAAGCTAGACTTGAAATCAACTTTAACATGGAAAA
TGTAAACAATTCAACGCAACTAGAGATCTTTCTTTGAAAATTTCAGCATC
GTCCCCGTGTATTCAAGGCTCCTATAGACTTCAGCGAAAATTATCTGACC
CTAATAGTAAGCCGATAATACTTGGGATCAAGTTTGTGGAAATCTAATCT
GAAAATGTTTGTTCTTATTTTAGGAGTAAAATTCAAGTTATAGAAAACTC
ATCTTGACAACTGAACCTACCAAGAAAGGAATACGCAAAAATGAAATCAC
AACTGACATTTTTCTCGATAATCACATTGCTGTCAACTACGTCAGGTAAG
AATTTTCTATGATAGATGGATAGGTCCCGGGCGGGGGATAGGTCATGCCT
TGGAATGGAATGGAAAAGTTTCCCGAGAGAGGGTACTTTGGAAAATGATG
GGTATGCGCGAACCGTACCGTACCTTCAACATGCAATCCTTAAAGAGACA
ATTTTCTGCCATAAATGGTTCTTAAGCGCCAATTTACTTCTGGAACGTAT
AATTTAACTCTGAGTTTCAACACGAGACTCGGATATCAGAATCCAAAAGA
TCAAATTGTTTCAATATTAAGGCTGAAAATATAGCCTAAAAGCCATTAAA
CCCCTCCAAAAATGAAATATCCAAATTAAATAAAGTGAACTGAAAGTACT
AAATTGCAATACTCGCCCAAACTTTATATCCTAAAAAAGTTAAAATTCTA
ACATCATCAGTTCTTGAATTGTCATACTTCAGATGAGAATGTTTGAATCA
TTTATGAACATTCAAATGGTTTATTATTAATCATCAATATGTTTCGAATT
AATTCGTAGATGCCATTAACTTTGACGATGCAGAATCGAGATTGCACGAA
GATCTGACGAAAGGTTACAACACAATTATTCGACCCGTAAAGCATCCTTC
AGATAAGATCGAAGTCAAGTTTGATCTCGCTCTACAACAAATTGTAGAAG
TTGTAAGTATCTATACCAACTGGTAAGAAATTACCATAGAATGATAGCAC
CACCAAATTCTGAAACTTTAGCGTTGTTTCCAAAACATTGTCAAATATCA
CAGCTTTTCCGTTGCAAAATTTGACAACGCTTGTCTTTGAACAAAGAACG
GGGTCAGGCTGAGGAACAGGGTTTCCAAATCATGTGCATTTTGTTGGCCA
ATCCAAAAGTAAACATTCTTGGGTATTAATAATTTTTTTATCTTACTAGT
AGACTTCGATTTGAAGCATTGTGTAGAATACCGTTGTTTTTTATACTTTC
CCATTTCCGCACTAAGATTCTTGTCATTTTTCCGGAATCTTTCCCTTATT
TTTTCCGGAATAACCGGCATGAGATTTGAAAGAGTTTGTTTCTAAAGGTA
CGGAAAATCTTGTCCATTCATATCACCACACCATCCCCACTGGAATTTTT
CGACTTAGGAACAATATAATTTTTATCCCCATTGGAATTTCGATAGAAAT
TTTATCTTCGTTGTGAGAAAAACTTTCACCGGGGCTGTGAGACAGGGGAG
TTATCTGGATGAAGGGAAAAAGAATGAAGGAAGCTCTTATTCTCCAATAC
TTTCACTAAATACATGTTTTTTCTTTCATAAGCATAACGTTTATAAGCAT
ACGCAGGCTCAGCTTTGGGTACCTAACCAATGGCTCTATTGTTTGAGAAC
AATAGAATGCTAAGCATAATGCGAGCCTGGTAGGGACAGAAACTTGCTTT
TATAAAAAAACAAATAGATTCAAGTCCAGAATTTTATTTTCTTATTAATT
ATTTCACAGAATGAGAAATCGGAATCATTAGTGGTCAGTGTATTTTTACG
ACAATATTGGACGGATGTCAAGTTGAAATGGAATGTATCCGATTATGGAA
ATATCTCTTCAACAAAATTCAAACCTGATTCCATTTGGGTACCAGACCTC
ATGTTGTATAATAAGTAAGCATATTTTAATCACCCAACCTGCTAAGCTTT
GAAAGCTCTCCAATTTTACACGCTCAATTATATTCGATAATATTGAAAGT
CACCTTCAGCAAGAAACTCTCAAACAACGCTCTTCCGTTCAATACGCTCC
CTTATTTGAAAAATTTAAATTTCCCTTGAAATTCGAATTTATAGAGAGCC
TTTTTTTCTACGCGTCCAACAAAGAGCGCTAGTGATTACAAATGAATGTT
TCCCAATGAAATCAGTCGGTTGAATAATCGAGAAAATTTGGAGTTATGAA
TTTCCTTTTTTTGGCTTCTAAATTCGGCAGCCAGGGGCTTTTTAATAGAC
TGGAAGGGCGCCAACAATTGAACTTTGCGCTATCAAAATTTTCAGAAAGT
AAAGTTCAGTTAGAAGTACACTCTAGTCTATAGTAAAAAGCTGCCCAATG
AAAATTTTACTGACCGATACTTTTTTCATCTTCAGTGCGGAGAAGGATGA
CAACTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAATGGTTAATC
ACGAAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAGGGAAATGC
CCTATGAACATTCGGTATTTTCCTTTCGACACACAAAGTTGTCGATTCAA
ATTCGGTTCATGGGCATATCATGGTGATGAAATTGATTTACAGGCAGCTA
GAGATGAAAACACATTTGATTTGGGTAAGATTTAATTCCTTCATTTTGTA
TGACTTGAAATTGGTTACTTTACGTAGGGAAGAAGTGACCTTGCAAATCA
TACATTAGAGATTAGCTGTAGCCTAACCCTTTAACTATACTTCATTGGCA
GGACCACGATACGAGTCTGAGTTAGGGGTTGCCAATTTCGCGAAACGAAG
ATAGTTTGATAACTGGTAGCCCCCTTCTCCAGAGTGATAAAATTTTGGAA
TTTAAGGCTAACTCATATGGCTCGATAGTGTTTTTTAGGCCACTTAATCG
TCAAAATATTATAATTCAACGGGGCTCATAAATACGATGCTTGATGCCCC
TGCTCAAAGAGACCAGGCTATCACAGACCTCTACAAAACCCGGAAGCACG
AATTCGTTAGAGGATGCAAACAGCCTAGACTAGGGATTGAACCAACTATC
TCACAATATAACCCCTTCTTTTGTGTCCACTTTTCAATTTACACGGCGCC
CCTTGTTCTCAGGGATAAGAGTCTTCCAAGTTTTAATATCGTCTCCTTAA
GGATCATACACGTTTTTTATAAGAACATCCAAAATTTTGAAGCCTCCAGA
TGTTCTTAACTTTTTCAGTTTCAAGTCTAAATATATTCATGTCATGTTCT
TATTTTGACCATTTTGTGGGTATTTTTGACCATTTTCCTAAAAGAGTCCA
AAAAGGGTCCAAAAAGCCTTAAAAGGTTCTCTAAAAAAAGCGTCGATGAT
TTTCGCACTAAGATTGAGTCAAATCTTAACCTTCCAAGTACGCAAAATCT
TTTTAAAAAACGTGAAAATTTCTTTTTTATTTGAAATCCAGAACTAAAAA
CAGTTTATGACCTTTTAAATCAAGTGGTCTGGAGTTATAGCTTTGAAGGG
TTAATCAAATCAAGAATTTGAATCTACATCTTTTAGGATCATATTCTGAG
CATTCGGAATGGACAATTAAAGACGCATACCTCAAACGGAACGTTCTTCG
TTATGGTTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAATTAAAGT
TGAAACGAAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATGATT
TTTATTGGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTGAATCGGG
TAAGTTACTTGAATGTCTTAGAATGAAATATCATGGTTTGATTGACTTTA
GATTGGATAGTAGAGTCTTTTTAACTCCAACCTCCATAACTCGAATGTCT
CCTTAACTCGAACAAACTTTCCTCGTTTTATAGACCCTGCTCCATAACTC
GAAATTTCCTTAACTCGAACAAATTTATGTTACTCATGAGTCTTCGGGTT
ATGGAGAATCCACTGTATTTTTATCCCTCCTGATAACCATCAAAAGTTCG
ACAATTTTACTAAGTGGAGATATTATCGGCCCTTTTTAAGCCTAATTTTG
GGCTTACGCCAATTAGGGCCGTTAATAACGCCGAAATTTGTAAAAATGGC
TACTAATACTTCAAGTTAGTAAATAATGACTAAAATTTACATTAAAATGT
CATTTTTCAGTAGTAAACTGTTGAAAATTCCATCCAAAATTACTGAGTTT
TAAATATATTAAATATTTCGCTGAAGTTTTAAATATGGAGTAAAACAATG
GATAATTTTCGTCTTCGAATCATACCTAAAACCGCTTTTAGGTTAAAATT
GCTAAATCTTGGCCCTTTTTACGCCGGCCCTTATTACGCCACGAGCCCAA
AAATAACGCTAATAAGGGCCTGTGTGAAAAGGGCCGATAAGGTATACGTT
TTTTGGCTCTCAGTGTTTCGTATACTTTATAAGAAGATTACAAAAACTTT
TCTTATTTGCAGGTGAAAGAATTTCGTTTGCTGTCACACTCATGTTGGCT
TTGACTGTTTTCATGTTGATTGTAGCAGAGATGATCCCCGCCAGCTCGGA
AAGCGTCCCAATGCTTGGTATATTTTTCACTTGTGTTATGATCGAAATGG
TTTTGATGGTATTCGCTATGTGTTACACATTGAATCTACATTTCAAAGAA
CCTAATTCCGAAAACCGTATCGGGAAATGGACACGGGCTATCGTTTACAA
CCGATTAGCAATCTATCTCGGTGTACGAAAACGGGAGAAGAAATTCGCTA
ACGTCAATGGTCACGTTAAAGCTAACGGGCACGTGAACGGCAATGCGGGT
TACGTCAAAGATGAGGTAGAGGACGTCGCTCTAAAAGAGAATAATACTGT
TCGTTTTAAAGAGTCCAATCATAATCACGATGAGCCTGACTCCGAATTGG
AAAGCACAGCGGCTAGACTAATGAAAAAGAGTATAAAAATGGCCGAGGAC
AAAGCTCGCGAAGAAGATATTGAGAAAATTATTAAAAAAGAACTTGTTGC
TTGTGCGAAAACTTTTGATGTGCTTTGCTTGATCATGTTTGCATTTATGT
TTGGAATGATCTTGTTGATTTATCTGCTTAATACTGATGTTTGATTGGTT
GTTGCGATGGGCAAATATTACGTAATCGGATTAATTTTCACGAGCCAAAA
AATCACAATATTTTTTGAATTTTATTTCGTGAATCAGTGTTTTGAAAAAT
TTCGCGAGTTTCATTTTTGCAAAAAAAGGCAAAAATTTGCAAAAACGCGA
AAATTTATCCGATATAAAAAACACCAAACGACCAGCTGTACTGGTAGACA
TTGAAACGAAGAATTAATCATGAACTCGTAAATGCAAAATATGTAAAAAC
AGTAAAATTTTAATTAAAGTCATATTTTATCTTAAGGGATTTTGAAATAA
AAACTTTTCAGTATTAAATAATAATTTTTTCCATATGCTCAAAAGTTATG
TTTAAATATATCTTTGATTATATAGTAAAATCTATTTTGATATCTACATT
ATTATGCAATAGTCAACGGTTACGTTTATTTTCTAAGAACAAACTATACA
TAAACTTACCGAAATACCGTGTTCCCATCAAAAATTGGCTGAATCTGGCA
ATCCCAGAAATTAAGAAAATTTA

Coding sequence (CDS) from alignment at scaffold_269:202299..207971-

>TCONS_00056209 ID=TCONS_00056209|Name=TCONS_00056209|organism=Clytia hemisphaerica|type=CDS|length=8622bp|location=Sequence derived from alignment at scaffold_269:202299..207971- (Clytia hemisphaerica)
GTGAAAGAATTTCGTTTGCTGTCACACTCATGTTGGCTTTGACTGTTTTC
ATGTTGATTGTAGCAGAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAAT
GCTTGGTATATTTTTCACTTGTGTTATGATCGAAATGGTTTTGATGGTAT
TCGCTATGTGTTACACATTGAATCTACATTTCAAAGAACCTAATTCCGAA
AACCGTATCGGGAAATGGACACGGGCTATCGTTTACAACCGATTAGCAAT
CTATCTCGGTGTACGAAAACGGGAGAAGAAATTCGCTAACGTCAATGGTC
ACGTTAAAGCTAACGGGCACGTGAACGGCAATGCGGGTTACGTCAAAGAT
GAGGTAGAGGACGTCGCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGA
GTCCAATCATAATCACGATGAGCCTGACTCCGAATTGGAAAGCACAGCGG
CTAGACTAATGAAAAAGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAA
GAAGATATTGAGAAAATTATTAAAAAAGAACTTGTTGCTTGTGCGAAAAC
TTTTGATGTGCTTTGCTTGATCATGTTTGCATTTATGTTTGGAATGATCT
TGTTGATTTATCTGCTTAATACTGATGTTTGAGATCATATTCTGAGCATT
CGGAATGGACAATTAAAGACGCATACCTCAAACGGAACGTTCTTCGTTAT
GGTTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAATTAAAGTTGAA
ACGAAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATGATTTTTA
TTGGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTGAATCGGTGCGG
AGAAGGATGACAACTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTA
ATGGTTAATCACGAAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTAC
AGGGAAATGCCCTATGAACATTCGGTATTTTCCTTTCGACACACAAAGTT
GTCGATTCAAATTCGGTTCATGGGCATATCATGGTGATGAAATTGATTTA
CAGGCAGCTAGAGATGAAAACACATTTGATTTGGAATGAGAAATCGGAAT
CATTAGTGGTCAGTGTATTTTTACGACAATATTGGACGGATGTCAAGTTG
AAATGGAATGTATCCGATTATGGAAATATCTCTTCAACAAAATTCAAACC
TGATTCCATTTGGGTACCAGACCTCATGTTGTATAATAAATGCCATTAAC
TTTGACGATGCAGAATCGAGATTGCACGAAGATCTGACGAAAGGTTACAA
CACAATTATTCGACCCGTAAAGCATCCTTCAGATAAGATCGAAGTCAAGT
TTGATCTCGCTCTACAACAAATTGTAGAAGTTATGAAATCACAACTGACA
TTTTTCTCGATAATCACATTGCTGTCAACTACGTCAGGTGAAAGAATTTC
GTTTGCTGTCACACTCATGTTGGCTTTGACTGTTTTCATGTTGATTGTAG
CAGAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAATGCTTGGTATATTT
TTCACTTGTGTTATGATCGAAATGGTTTTGATGGTATTCGCTATGTGTTA
CACATTGAATCTACATTTCAAAGAACCTAATTCCGAAAACCGTATCGGGA
AATGGACACGGGCTATCGTTTACAACCGATTAGCAATCTATCTCGGTGTA
CGAAAACGGGAGAAGAAATTCGCTAACGTCAATGGTCACGTTAAAGCTAA
CGGGCACGTGAACGGCAATGCGGGTTACGTCAAAGATGAGGTAGAGGACG
TCGCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGAGTCCAATCATAAT
CACGATGAGCCTGACTCCGAATTGGAAAGCACAGCGGCTAGACTAATGAA
AAAGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAAGAAGATATTGAGA
AAATTATTAAAAAAGAACTTGTTGCTTGTGCGAAAACTTTTGATGTGCTT
TGCTTGATCATGTTTGCATTTATGTTTGGAATGATCTTGTTGATTTATCT
GCTTAATACTGATGTTTGAGATCATATTCTGAGCATTCGGAATGGACAAT
TAAAGACGCATACCTCAAACGGAACGTTCTTCGTTATGGTTGCTGTCCTG
AACCTTATCCTGATGTCACTGTTGAATTAAAGTTGAAACGAAAACCTCTG
TTTTACGTATTGAATCTATTGCTACCAATGATTTTTATTGGTGTTTTGAC
GCTTCTGGCTTTCTTCCTACCAGCTGAATCGGTGCGGAGAAGGATGACAA
CTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAATGGTTAATCACG
AAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAGGGAAATGCCCT
ATGAACATTCGGTATTTTCCTTTCGACACACAAAGTTGTCGATTCAAATT
CGGTTCATGGGCATATCATGGTGATGAAATTGATTTACAGGCAGCTAGAG
ATGAAAACACATTTGATTTGGAATGAGAAATCGGAATCATTAGTGGTCAG
TGTATTTTTACGACAATATTGGACGGATGTCAAGTTGAAATGGAATGTAT
CCGATTATGGAAATATCTCTTCAACAAAATTCAAACCTGATTCCATTTGG
GTACCAGACCTCATGTTGTATAATAAATGCCATTAACTTTGACGATGCAG
AATCGAGATTGCACGAAGATCTGACGAAAGGTTACAACACAATTATTCGA
CCCGTAAAGCATCCTTCAGATAAGATCGAAGTCAAGTTTGATCTCGCTCT
ACAACAAATTGTAGAAGTTATGAAATCACAACTGACATTTTTCTCGATAA
TCACATTGCTGTCAACTACGTCAGGTGAAAGAATTTCGTTTGCTGTCACA
CTCATGTTGGCTTTGACTGTTTTCATGTTGATTGTAGCAGAGATGATCCC
CGCCAGCTCGGAAAGCGTCCCAATGCTTGGTATATTTTTCACTTGTGTTA
TGATCGAAATGGTTTTGATGGTATTCGCTATGTGTTACACATTGAATCTA
CATTTCAAAGAACCTAATTCCGAAAACCGTATCGGGAAATGGACACGGGC
TATCGTTTACAACCGATTAGCAATCTATCTCGGTGTACGAAAACGGGAGA
AGAAATTCGCTAACGTCAATGGTCACGTTAAAGCTAACGGGCACGTGAAC
GGCAATGCGGGTTACGTCAAAGATGAGGTAGAGGACGTCGCTCTAAAAGA
GAATAATACTGTTCGTTTTAAAGAGTCCAATCATAATCACGATGAGCCTG
ACTCCGAATTGGAAAGCACAGCGGCTAGACTAATGAAAAAGAGTATAAAA
ATGGCCGAGGACAAAGCTCGCGAAGAAGATATTGAGAAAATTATTAAAAA
AGAACTTGTTGCTTGTGCGAAAACTTTTGATGTGCTTTGCTTGATCATGT
TTGCATTTATGTTTGGAATGATCTTGTTGATTTATCTGCTTAATACTGAT
GTTTGAGATCATATTCTGAGCATTCGGAATGGACAATTAAAGACGCATAC
CTCAAACGGAACGTTCTTCGTTATGGTTGCTGTCCTGAACCTTATCCTGA
TGTCACTGTTGAATTAAAGTTGAAACGAAAACCTCTGTTTTACGTATTGA
ATCTATTGCTACCAATGATTTTTATTGGTGTTTTGACGCTTCTGGCTTTC
TTCCTACCAGCTGAATCGGTGCGGAGAAGGATGACAACTTTGGAGGAAGT
CTAGATCAGCTCCCCACTCGTGTAATGGTTAATCACGAAGGATCTGTCAC
TTGGCTAGCTCCAGCTATCATTACAGGGAAATGCCCTATGAACATTCGGT
ATTTTCCTTTCGACACACAAAGTTGTCGATTCAAATTCGGTTCATGGGCA
TATCATGGTGATGAAATTGATTTACAGGCAGCTAGAGATGAAAACACATT
TGATTTGGAATGAGAAATCGGAATCATTAGTGGTCAGTGTATTTTTACGA
CAATATTGGACGGATGTCAAGTTGAAATGGAATGTATCCGATTATGGAAA
TATCTCTTCAACAAAATTCAAACCTGATTCCATTTGGGTACCAGACCTCA
TGTTGTATAATAAATGCCATTAACTTTGACGATGCAGAATCGAGATTGCA
CGAAGATCTGACGAAAGGTTACAACACAATTATTCGACCCGTAAAGCATC
CTTCAGATAAGATCGAAGTCAAGTTTGATCTCGCTCTACAACAAATTGTA
GAAGTTATGAAATCACAACTGACATTTTTCTCGATAATCACATTGCTGTC
AACTACGTCAGGTGAAAGAATTTCGTTTGCTGTCACACTCATGTTGGCTT
TGACTGTTTTCATGTTGATTGTAGCAGAGATGATCCCCGCCAGCTCGGAA
AGCGTCCCAATGCTTGGTATATTTTTCACTTGTGTTATGATCGAAATGGT
TTTGATGGTATTCGCTATGTGTTACACATTGAATCTACATTTCAAAGAAC
CTAATTCCGAAAACCGTATCGGGAAATGGACACGGGCTATCGTTTACAAC
CGATTAGCAATCTATCTCGGTGTACGAAAACGGGAGAAGAAATTCGCTAA
CGTCAATGGTCACGTTAAAGCTAACGGGCACGTGAACGGCAATGCGGGTT
ACGTCAAAGATGAGGTAGAGGACGTCGCTCTAAAAGAGAATAATACTGTT
CGTTTTAAAGAGTCCAATCATAATCACGATGAGCCTGACTCCGAATTGGA
AAGCACAGCGGCTAGACTAATGAAAAAGAGTATAAAAATGGCCGAGGACA
AAGCTCGCGAAGAAGATATTGAGAAAATTATTAAAAAAGAACTTGTTGCT
TGTGCGAAAACTTTTGATGTGCTTTGCTTGATCATGTTTGCATTTATGTT
TGGAATGATCTTGTTGATTTATCTGCTTAATACTGATGTTTGAGATCATA
TTCTGAGCATTCGGAATGGACAATTAAAGACGCATACCTCAAACGGAACG
TTCTTCGTTATGGTTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAA
TTAAAGTTGAAACGAAAACCTCTGTTTTACGTATTGAATCTATTGCTACC
AATGATTTTTATTGGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTG
AATCGGTGCGGAGAAGGATGACAACTTTGGAGGAAGTCTAGATCAGCTCC
CCACTCGTGTAATGGTTAATCACGAAGGATCTGTCACTTGGCTAGCTCCA
GCTATCATTACAGGGAAATGCCCTATGAACATTCGGTATTTTCCTTTCGA
CACACAAAGTTGTCGATTCAAATTCGGTTCATGGGCATATCATGGTGATG
AAATTGATTTACAGGCAGCTAGAGATGAAAACACATTTGATTTGGAATGA
GAAATCGGAATCATTAGTGGTCAGTGTATTTTTACGACAATATTGGACGG
ATGTCAAGTTGAAATGGAATGTATCCGATTATGGAAATATCTCTTCAACA
AAATTCAAACCTGATTCCATTTGGGTACCAGACCTCATGTTGTATAATAA
ATGCCATTAACTTTGACGATGCAGAATCGAGATTGCACGAAGATCTGACG
AAAGGTTACAACACAATTATTCGACCCGTAAAGCATCCTTCAGATAAGAT
CGAAGTCAAGTTTGATCTCGCTCTACAACAAATTGTAGAAGTTATGAAAT
CACAACTGACATTTTTCTCGATAATCACATTGCTGTCAACTACGTCAGGT
GAAAGAATTTCGTTTGCTGTCACACTCATGTTGGCTTTGACTGTTTTCAT
GTTGATTGTAGCAGAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAATGC
TTGGTATATTTTTCACTTGTGTTATGATCGAAATGGTTTTGATGGTATTC
GCTATGTGTTACACATTGAATCTACATTTCAAAGAACCTAATTCCGAAAA
CCGTATCGGGAAATGGACACGGGCTATCGTTTACAACCGATTAGCAATCT
ATCTCGGTGTACGAAAACGGGAGAAGAAATTCGCTAACGTCAATGGTCAC
GTTAAAGCTAACGGGCACGTGAACGGCAATGCGGGTTACGTCAAAGATGA
GGTAGAGGACGTCGCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGAGT
CCAATCATAATCACGATGAGCCTGACTCCGAATTGGAAAGCACAGCGGCT
AGACTAATGAAAAAGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAAGA
AGATATTGAGAAAATTATTAAAAAAGAACTTGTTGCTTGTGCGAAAACTT
TTGATGTGCTTTGCTTGATCATGTTTGCATTTATGTTTGGAATGATCTTG
TTGATTTATCTGCTTAATACTGATGTTTGAGATCATATTCTGAGCATTCG
GAATGGACAATTAAAGACGCATACCTCAAACGGAACGTTCTTCGTTATGG
TTGCTGTCCTGAACCTTATCCTGATGTCACTGTTGAATTAAAGTTGAAAC
GAAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATGATTTTTATT
GGTGTTTTGACGCTTCTGGCTTTCTTCCTACCAGCTGAATCGGTGCGGAG
AAGGATGACAACTTTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAAT
GGTTAATCACGAAGGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAG
GGAAATGCCCTATGAACATTCGGTATTTTCCTTTCGACACACAAAGTTGT
CGATTCAAATTCGGTTCATGGGCATATCATGGTGATGAAATTGATTTACA
GGCAGCTAGAGATGAAAACACATTTGATTTGGAATGAGAAATCGGAATCA
TTAGTGGTCAGTGTATTTTTACGACAATATTGGACGGATGTCAAGTTGAA
ATGGAATGTATCCGATTATGGAAATATCTCTTCAACAAAATTCAAACCTG
ATTCCATTTGGGTACCAGACCTCATGTTGTATAATAAATGCCATTAACTT
TGACGATGCAGAATCGAGATTGCACGAAGATCTGACGAAAGGTTACAACA
CAATTATTCGACCCGTAAAGCATCCTTCAGATAAGATCGAAGTCAAGTTT
GATCTCGCTCTACAACAAATTGTAGAAGTTATGAAATCACAACTGACATT
TTTCTCGATAATCACATTGCTGTCAACTACGTCAGGTGAAAGAATTTCGT
TTGCTGTCACACTCATGTTGGCTTTGACTGTTTTCATGTTGATTGTAGCA
GAGATGATCCCCGCCAGCTCGGAAAGCGTCCCAATGCTTGGTATATTTTT
CACTTGTGTTATGATCGAAATGGTTTTGATGGTATTCGCTATGTGTTACA
CATTGAATCTACATTTCAAAGAACCTAATTCCGAAAACCGTATCGGGAAA
TGGACACGGGCTATCGTTTACAACCGATTAGCAATCTATCTCGGTGTACG
AAAACGGGAGAAGAAATTCGCTAACGTCAATGGTCACGTTAAAGCTAACG
GGCACGTGAACGGCAATGCGGGTTACGTCAAAGATGAGGTAGAGGACGTC
GCTCTAAAAGAGAATAATACTGTTCGTTTTAAAGAGTCCAATCATAATCA
CGATGAGCCTGACTCCGAATTGGAAAGCACAGCGGCTAGACTAATGAAAA
AGAGTATAAAAATGGCCGAGGACAAAGCTCGCGAAGAAGATATTGAGAAA
ATTATTAAAAAAGAACTTGTTGCTTGTGCGAAAACTTTTGATGTGCTTTG
CTTGATCATGTTTGCATTTATGTTTGGAATGATCTTGTTGATTTATCTGC
TTAATACTGATGTTTGAGATCATATTCTGAGCATTCGGAATGGACAATTA
AAGACGCATACCTCAAACGGAACGTTCTTCGTTATGGTTGCTGTCCTGAA
CCTTATCCTGATGTCACTGTTGAATTAAAGTTGAAACGAAAACCTCTGTT
TTACGTATTGAATCTATTGCTACCAATGATTTTTATTGGTGTTTTGACGC
TTCTGGCTTTCTTCCTACCAGCTGAATCGGTGCGGAGAAGGATGACAACT
TTGGAGGAAGTCTAGATCAGCTCCCCACTCGTGTAATGGTTAATCACGAA
GGATCTGTCACTTGGCTAGCTCCAGCTATCATTACAGGGAAATGCCCTAT
GAACATTCGGTATTTTCCTTTCGACACACAAAGTTGTCGATTCAAATTCG
GTTCATGGGCATATCATGGTGATGAAATTGATTTACAGGCAGCTAGAGAT
GAAAACACATTTGATTTGGAATGAGAAATCGGAATCATTAGTGGTCAGTG
TATTTTTACGACAATATTGGACGGATGTCAAGTTGAAATGGAATGTATCC
GATTATGGAAATATCTCTTCAACAAAATTCAAACCTGATTCCATTTGGGT
ACCAGACCTCATGTTGTATAATAAATGCCATTAACTTTGACGATGCAGAA
TCGAGATTGCACGAAGATCTGACGAAAGGTTACAACACAATTATTCGACC
CGTAAAGCATCCTTCAGATAAGATCGAAGTCAAGTTTGATCTCGCTCTAC
AACAAATTGTAGAAGTTATGAAATCACAACTGACATTTTTCTCGATAATC
ACATTGCTGTCAACTACGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035391XLOC_035391Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056209-proteinTCONS_00056209-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056209-exon-scaffold_269-1575043694:207627..207971TCONS_00056209-exon-scaffold_269-1575043694:207627..207971Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:206970..207112TCONS_00056209-exon-scaffold_269-1575043694:206970..207112Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:206008..206162TCONS_00056209-exon-scaffold_269-1575043694:206008..206162Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:205298..205536TCONS_00056209-exon-scaffold_269-1575043694:205298..205536Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:204173..204385TCONS_00056209-exon-scaffold_269-1575043694:204173..204385Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1575043694:202299..203459TCONS_00056209-exon-scaffold_269-1575043694:202299..203459Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:207627..207971TCONS_00056209-exon-scaffold_269-1510915933:207627..207971Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:206970..207112TCONS_00056209-exon-scaffold_269-1510915933:206970..207112Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:206008..206162TCONS_00056209-exon-scaffold_269-1510915933:206008..206162Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:205298..205536TCONS_00056209-exon-scaffold_269-1510915933:205298..205536Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:204173..204385TCONS_00056209-exon-scaffold_269-1510915933:204173..204385Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1510915933:202299..203459TCONS_00056209-exon-scaffold_269-1510915933:202299..203459Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:207627..207971TCONS_00056209-exon-scaffold_269-1491911889:207627..207971Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:206970..207112TCONS_00056209-exon-scaffold_269-1491911889:206970..207112Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:206008..206162TCONS_00056209-exon-scaffold_269-1491911889:206008..206162Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:205298..205536TCONS_00056209-exon-scaffold_269-1491911889:205298..205536Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:204173..204385TCONS_00056209-exon-scaffold_269-1491911889:204173..204385Clytia hemisphaericaexon
TCONS_00056209-exon-scaffold_269-1491911889:202299..203459TCONS_00056209-exon-scaffold_269-1491911889:202299..203459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:202299..207971 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.2361	15.6168	22.0438	23.4909	18.8499	13.0246	8.37719	8.00558	4.7126	6.09376	4.09238	3.72269	19.6162	16.7445	7.96681	4.12493	5.44211	4.82976	17.096	15.4166	6.99769	6.11902	13.8935	15.3157	5.35512	5.03495	19.8807	13.4871	4.46465	5.14211
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00056209 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 277.33 bits (708), Expect = 1.591e-83
Identity = 136/332 (40.96%), Postives = 208/332 (62.65%), Query Frame = 3 
Query:  369 ESRLHEDLTKGYNTIIRPVKHPSDKIEVKFDLALQQIVEVNEKSESLVVSVFLRQYWTDVKLKWNVSDYGNISSTKFKPDSIWVPDLMLYNNAEKDDNFGGSLDQLPTRVMVNHEGSVTWLAPAIITGKCPMNIRYFPFDTQSCRFKFGSWAYHGDEIDLQAARDENTFDLGSYSEHSEWTIKDAYLKRNVLRYGCCPEPYPDVTVELKLKRKPLFYVLNLLLPMIFIGVLTLLAFFLPAESGERISFAVTLMLALTVFMLIVAEMIPASSESVPMLGIFFTCVMIEMVLMVFAMCYTLNLHFKEPNSENRIGKWTRAIVYNRLAIYLGVRK 1364
            + +L+++L K YN + RPV + S  + V F L+L QI++V+EK++ L  +++L+  WTD  L+WNVS+Y  + + +F    IW PD++LYN+A  D+ F  +     T V+VN  G   +L P I    C +++R+FPFD Q C+ KFGSW+Y G  +DLQ        D+  Y  + EW +     KR+   Y CC EPYPDVT  + ++R+ L+Y LNLL+P + I  L LL F LPA+SGE+IS  +T++L+LTVFML+VAE++PA+S+SVP++  +F   MI + L V      L  H  +P+   ++ KWTR I+ N  A +L +++
Sbjct:   26 QRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSA--DERFDATFH---TNVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQMQEA----DISGYIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDG-GKMPKWTRVILLNWCAWFLRMKR 347
The following BLAST results are available for this feature:
BLAST of TCONS_00056209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA71.591e-8340.96Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
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