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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056210 ID=TCONS_00056210|Name=TCONS_00056210|organism=Clytia hemisphaerica|type=transcript|length=2338bp
AATCAAATAGCGAAACAGtCTTACATTGTGATGACAAAACACGCTGACGT
GTTGGTTTTTCCAGGAAGAAAACAGAGGAAATGCATTGTTATTGGTGATC
AAATAGCcttataatttataattttacatatttttaattgtatgtatttc
aaagattgtttgtaagaccatgttcagacgttacggttccgtgtGAACGT
GTGAACGCCAAAATTTGAAGACGTTACATATAAAGCAAAAtagatcgaaa
cggttttgttccactattttcatcggaacggaactgctccgctttcttgc
tccgaaaccaatatgaaagATATGACATGAAACTGTAACGTCTGAACTGG
TTTGAACATGGTCTATAAATTATTGTTAATCAATAAAAAAAGGTTGTTCC
AGTTTCTTCTTTTGAGCAACACGCACGTTGTCCCCAGCCATCCAAACATT
TTGTATGTACGCAATGGTTGCTTGTACAAGAATGGTGGTGGTACACTAAA
TATATAGAACAAAAAATTCGGCATATAGTGTATCGTTACAAAACGAAAAC
CCAGGTAATATATAGCGTCCAGTTGACAAAGCTACTCACTCAGCTCAGAC
AAATTGAATAGTacttaaaaatttaaagacACACGATTTTCAGGTAGGTA
AAAGTGGGAAAACCTACCTAGATAACTTTAATACCCTAGAACAGAATAGT
TTTCTACTGGGCACTTTGAAAGCCTACCTTAGTGAAGTTTGCGTTGATAA
TGACTCATTGATGAAACATCTCTATTTGTCTCCGTCGTTTCGTCGTTTTA
CCGTCGTTTATCACgcataaataaaaagaaaagaaaagcgTTAATCCGTT
AACTTCTCCCAAGAACATCAAAGCCCGAGAACCGGAACTCACATTGTTTC
ACCCACCAAAGAATTGGTTTGACGAGAAaggtcggtctccacttgcaTGC
GTTtctcgatcgcactttttcgagtgcgcgttacatttttatgacgtaat
cttttttccaagccaAAGTAAAAGTGGATTAAAGCCAAAAAAtatgcgat
cgcagcgcgcggaAGTGGAGACTGGCCATGAGAGagtaatacactcttct
cgagatgttTTTGCGCGGCATGAAAACGAGGCCAGCAATGATATTTTGTA
AACATTATACAAAATGGCGAACGAAAGCGGTGCTGTTCAAGAGCTTTTGG
ATGAACTTCTTCTAAACACTGAAAGATCTTCTATTGAAATTATTGttgaa
aaagaacaaaacattgaatGGACTAAACATTTAACTAATCttcctttgtt
tacaaaaagagAGATCGAATTACATCGACAAAAGAGTGGCAAAAATGCAC
GATCAATCATCAAAACAAGAGATCAaggtttaaaattcaaaaacgaaGGA
TATGTTATAAAAGATCAAATGTATACAAAGACTTCCTCACTATTTTTTAC
TGTCAAAGCTGAATGTAGATCGAGCATgatacaagaaaaaaaaacatttg
gaaGTTGTTCTAAATAGACTTAATGGAGAAGTTTTCAGTGGAACGTGTGA
TTGTGCTGCAGGCAATTCTTCGTATTGCAATCATATAATGGCTCTGTTAT
TTGAACTAGCAGATTTTTCGTTACGTGAGATANAATTCTACTTCAAgttt
taaagataaattttctTGTTCAAGTTCCTCAATTCTTTGTTTCAGTTCAT
TGATCTCGTTTACTTCATTGTTTATATCATTGACGTTTCTATTCTCGGGC
TCCTTTTGAATCGTATTACAAGCAGGATCGTCGAAAATTTTGGATAAACG
TTTTTTAGGTGATTTTCTTGATGTTACTTTTTTcggctttttaaaagaaa
acactCTTGGTATTGCTCCTTTCCTTAAAACCTTTTTATGTGTTCCAAGG
GTGACTTTAATGTCCTctgctttaaaatgaaattcacAGATAACTGTTGA
AGATGTGATTTTGAACTTATCTTTTCCTCCCTTTCGTCGATACCGGTAAA
TGATTCGTTTccattcttgattttgtttagGGTTAGTTGGGATCTTGAAA
AATCCAATTTCAGTTTTGGTCATGTCACTGTTATAAAAGCTGCTCTTGCA
TTCGGGTATACAACAATATGCACCTTTTCctcctttcaaaacttttccag
gTCGCGTAGCAGACGATCAAGCGGgagaggataattacaaggtctcaaaa
gaaggttgtctactgctgattccgacatcgacttttagcctgactgaaat
tcgagccgttactagcaaccctgcggggcccaaggcgccgagtatgcacc
cggcacagtgacaagccgttactagcaaccctgaccct Run BLAST on NCBI transcript from alignment at scaffold_269:250441..253320- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056210 ID=TCONS_00056210|Name=TCONS_00056210|organism=Clytia hemisphaerica|type=transcript|length=2880bp|location=Sequence derived from alignment at scaffold_269:250441..253320- (Clytia hemisphaerica)
AATCAAATAGCGAAACAGGTAATCAATTAGATATTTACATTTTAGTGTGG
TGAACTGTAATTAGCCGTTATCGTAAAAGATTTGTCGTGTCTTTCTTTTG
ATTCTGTACTTTGATCATATCAATGTTTCGTATCGATATTCTTAAATTCG
AGCCTGCACTCGATGTTCAATCTATTTATCCGTGTTTAGGTTTGAGGCAT
GACATTCCGCTCGCTTTTTCTCTCTTCTTTTGTTCTTTTTAGTCTTACAT
TGTGATGACAAAACACGCTGACGTGTTGGTTTTTCCAGGTAAGACGTATA
TTACCTTTAATATCATAATATAAATGGCTCAATCTCATCTGATATTTAGT
TTCATGATGACGTAATTTCTATGGCGTTCTAAATGGTCTGTGTAGATACG
TGATTCCGCATTAACGACGTACGTAGGTGCGTGGAGAGAGGAATGACTTT
TTTTCAAATTGGTTAATCTAAGGATACTTTTGAAAATATTTTATCGGGCT
TTTATAATCTCAGACATAATGGATACTAAAGCTGTGGATAGACAAGAGAT
TTAAAATAGAGGACGGTAGTCTATTAGTTAATCTTTCTACTTTCTATCTC
CTTCAGGAAGAAAACAGAGGAAATGCATTGTTATTGGTGATCAAATAGCC
TTATAATTTATAATTTTACATATTTTTAATTGTATGTATTTCAAAGATTG
TTTGTAAGACCATGTTCAGACGTTACGGTTCCGTGTGAACGTGTGAACGC
CAAAATTTGAAGACGTTACATATAAAGCAAAATAGATCGAAACGGTTTTG
TTCCACTATTTTCATCGGAACGGAACTGCTCCGCTTTCTTGCTCCGAAAC
CAATATGAAAGATATGACATGAAACTGTAACGTCTGAACTGGTTTGAACA
TGGTCTATAAATTATTGTTAATCAATAAAAAAAGGTTGTTCCAGTTTCTT
CTTTTGAGCAACACGCACGTTGTCCCCAGCCATCCAAACATTTTGTATGT
ACGCAATGGTTGCTTGTACAAGAATGGTGGTGGTACACTAAATATATAGA
ACAAAAAATTCGGCATATAGTGTATCGTTACAAAACGAAAACCCAGGTAA
TATATAGCGTCCAGTTGACAAAGCTACTCACTCAGCTCAGACAAATTGAA
TAGTACTTAAAAATTTAAAGACACACGATTTTCAGGTAGGTAAAAGTGGG
AAAACCTACCTAGATAACTTTAATACCCTAGAACAGAATAGTTTTCTACT
GGGCACTTTGAAAGCCTACCTTAGTGAAGTTTGCGTTGATAATGACTCAT
TGATGAAACATCTCTATTTGTCTCCGTCGTTTCGTCGTTTTACCGTCGTT
TATCACGCATAAATAAAAAGAAAAGAAAAGCGTTAATCCGTTAACTTCTC
CCAAGAACATCAAAGCCCGAGAACCGGAACTCACATTGTTTCACCCACCA
AAGAATTGGTTTGACGAGAAAGGTCGGTCTCCACTTGCATGCGTTTCTCG
ATCGCACTTTTTCGAGTGCGCGTTACATTTTTATGACGTAATCTTTTTTC
CAAGCCAAAGTAAAAGTGGATTAAAGCCAAAAAATATGCGATCGCAGCGC
GCGGAAGTGGAGACTGGCCATGAGAGAGTAATACACTCTTCTCGAGATGT
TTTTGCGCGGCATGAAAACGAGGCCAGCAATGATATTTTGTAAACATTAT
ACAAAATGGCGAACGAAAGCGGTGCTGTTCAAGAGCTTTTGGATGAACTT
CTTCTAAACACTGAAAGATCTTCTATTGAAATTATTGTTGAAAAAGAACA
AAACATTGAATGGACTAAACATTTAACTAATCTTCCTTTGTTTACAAAAA
GAGAGATCGAATTACATCGACAAAAGAGTGGCAAAAATGCACGATCAATC
ATCAAAACAAGAGATCAAGGTTTAAAATTCAAAAACGAAGGATATGTTAT
AAAAGATCAAATGTATACAAAGACTTCCTCACTATTTTTTACTGTCAAAG
CTGAATGTAGATCGAGCATGATACAAGAAAAAAAAACATTTGGAAGTTGT
TCTAAATAGACTTAATGGAGAAGTTTTCAGTGGAACGTGTGATTGTGCTG
CAGGCAATTCTTCGTATTGCAATCATATAATGGCTCTGTTATTTGAACTA
GCAGATTTTTCGTTACGTGAGATANAATTCTACTTCAAGTTTTAAAGATA
AATTTTCTTGTTCAAGTTCCTCAATTCTTTGTTTCAGTTCATTGATCTCG
TTTACTTCATTGTTTATATCATTGACGTTTCTATTCTCGGGCTCCTTTTG
AATCGTATTACAAGCAGGATCGTCGAAAATTTTGGATAAACGTTTTTTAG
GTGATTTTCTTGATGTTACTTTTTTCGGCTTTTTAAAAGAAAACACTCTT
GGTATTGCTCCTTTCCTTAAAACCTTTTTATGTGTTCCAAGGGTGACTTT
AATGTCCTCTGCTTTAAAATGAAATTCACAGATAACTGTTGAAGATGTGA
TTTTGAACTTATCTTTTCCTCCCTTTCGTCGATACCGGTAAATGATTCGT
TTCCATTCTTGATTTTGTTTAGGGTTAGTTGGGATCTTGAAAAATCCAAT
TTCAGTTTTGGTCATGTCACTGTTATAAAAGCTGCTCTTGCATTCGGGTA
TACAACAATATGCACCTTTTCCTCCTTTCAAAACTTTTCCAGGTCGCGTA
GCAGACGATCAAGCGGGAGAGGATAATTACAAGGTCTCAAAAGAAGGTTG
TCTACTGCTGATTCCGACATCGACTTTTAGCCTGACTGAAATTCGAGCCG
TTACTAGCAACCCTGCGGGGCCCAAGGCGCCGAGTATGCACCCGGCACAG
TGACAAGCCGTTACTAGCAACCCTGACCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056210-exon-scaffold_269-1575043694:253303..253320 | TCONS_00056210-exon-scaffold_269-1575043694:253303..253320 | Clytia hemisphaerica | exon |
| TCONS_00056210-exon-scaffold_269-1575043694:253033..253078 | TCONS_00056210-exon-scaffold_269-1575043694:253033..253078 | Clytia hemisphaerica | exon |
| TCONS_00056210-exon-scaffold_269-1575043694:250441..252714 | TCONS_00056210-exon-scaffold_269-1575043694:250441..252714 | Clytia hemisphaerica | exon |
| TCONS_00056210-exon-scaffold_269-1510915933:253303..253320 | TCONS_00056210-exon-scaffold_269-1510915933:253303..253320 | Clytia hemisphaerica | exon |
| TCONS_00056210-exon-scaffold_269-1510915933:253033..253078 | TCONS_00056210-exon-scaffold_269-1510915933:253033..253078 | Clytia hemisphaerica | exon |
| TCONS_00056210-exon-scaffold_269-1510915933:250441..252714 | TCONS_00056210-exon-scaffold_269-1510915933:250441..252714 | Clytia hemisphaerica | exon |
| TCONS_00056210-exon-scaffold_269-1491911889:253303..253320 | TCONS_00056210-exon-scaffold_269-1491911889:253303..253320 | Clytia hemisphaerica | exon |
| TCONS_00056210-exon-scaffold_269-1491911889:253033..253078 | TCONS_00056210-exon-scaffold_269-1491911889:253033..253078 | Clytia hemisphaerica | exon |
| TCONS_00056210-exon-scaffold_269-1491911889:250441..252714 | TCONS_00056210-exon-scaffold_269-1491911889:250441..252714 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:250441..253320 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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