TCONS_00056213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056213
Unique NameTCONS_00056213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056213 ID=TCONS_00056213|Name=TCONS_00056213|organism=Clytia hemisphaerica|type=transcript|length=662bp
agattcaatctgtcgtcaaaaaatACGGCAcatattttaagactttttct
tgcctgagaaaagtTAAAGACTCGATTCTAGCACTTCGGGTTTATACTTC
ATTGCTTCGTATCCATAATAGGAACGCCTAGTAATTATTATAGCAAAACA
TGGCCGATTCTTCAGCATTCACAGGTTGAAGTTTCGTCTGTCTCTGACGA
ATTTCTGTGTCAAAATTCAGCATAACTCACCAAATGTTCAAGTTCAAGAG
TATGTGCTTAATTTGCTgtggaaaatcaattttttctttggCCACTGTAA
TTATTATAGTTGGCGTAGTCAATTCTGTTTGATTCAGAAAATTAGCCAGT
CACCCCTGACGACCAAATCCGTTGCTAAGGCTTTTATTAAATCTGGAAAG
ATCTCATCCATCCAATGGTTTTCGTCGACAGGTTCATCACCGAAATGGTA
TTGATACACGAGTTTCGAGTTAAATCCTGTCTCGATTTCATTCCCAAAAG
ATAATTAAGTGAACAAACCGAACAGTATCCGTGCGGCTAGTATTTATAAC
GTCCTCTTTATTTTACATTTAACATAATATGTGGGTGTGCAGTGTAAACG
ACTTTAAGTAGAAAAAGTTTTAGCGAATATAAAATTGCCAATTTCCGATA
GGAGAATACCCA
Run BLAST on NCBI

transcript from alignment at scaffold_269:303233..303894-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056213 ID=TCONS_00056213|Name=TCONS_00056213|organism=Clytia hemisphaerica|type=transcript|length=662bp|location=Sequence derived from alignment at scaffold_269:303233..303894- (Clytia hemisphaerica)
AGATTCAATCTGTCGTCAAAAAATACGGCACATATTTTAAGACTTTTTCT
TGCCTGAGAAAAGTTAAAGACTCGATTCTAGCACTTCGGGTTTATACTTC
ATTGCTTCGTATCCATAATAGGAACGCCTAGTAATTATTATAGCAAAACA
TGGCCGATTCTTCAGCATTCACAGGTTGAAGTTTCGTCTGTCTCTGACGA
ATTTCTGTGTCAAAATTCAGCATAACTCACCAAATGTTCAAGTTCAAGAG
TATGTGCTTAATTTGCTGTGGAAAATCAATTTTTTCTTTGGCCACTGTAA
TTATTATAGTTGGCGTAGTCAATTCTGTTTGATTCAGAAAATTAGCCAGT
CACCCCTGACGACCAAATCCGTTGCTAAGGCTTTTATTAAATCTGGAAAG
ATCTCATCCATCCAATGGTTTTCGTCGACAGGTTCATCACCGAAATGGTA
TTGATACACGAGTTTCGAGTTAAATCCTGTCTCGATTTCATTCCCAAAAG
ATAATTAAGTGAACAAACCGAACAGTATCCGTGCGGCTAGTATTTATAAC
GTCCTCTTTATTTTACATTTAACATAATATGTGGGTGTGCAGTGTAAACG
ACTTTAAGTAGAAAAAGTTTTAGCGAATATAAAATTGCCAATTTCCGATA
GGAGAATACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035395XLOC_035395Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056213-exon-scaffold_269-1575043694:303233..303894TCONS_00056213-exon-scaffold_269-1575043694:303233..303894Clytia hemisphaericaexon
TCONS_00056213-exon-scaffold_269-1510915933:303233..303894TCONS_00056213-exon-scaffold_269-1510915933:303233..303894Clytia hemisphaericaexon
TCONS_00056213-exon-scaffold_269-1491911889:303233..303894TCONS_00056213-exon-scaffold_269-1491911889:303233..303894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:303233..303894 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	3.52241	1.812	0.927676	0.896827	0.322827	0.0827219	4.49566	5.74981	0.415784	0.443212	0.269391	0.489832	0.168172	0.92715	0.107389	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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