TCONS_00056214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056214
Unique NameTCONS_00056214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056214 ID=TCONS_00056214|Name=TCONS_00056214|organism=Clytia hemisphaerica|type=transcript|length=332bp
CGCCTAGTAATTATTATAGCAAAACATGGCCGATTCTTCAGCATTCACAG
GCTTTTATTAAATCTGGAAAGATCTCATCCATCCAATGGTTTTCGTCGAC
AGGTTCATCACCGAAATGGTATTGATACACGAGTTTCGAGTTAAATCCTG
TCTCGATTTCATTCCCAAAAGATAATTAAGTGAACAAACCGAACAGTATC
CGTGCGGCTAGTATTTATAACGTCCTCTTTATTTTACATTTAACATAATA
TGTGGGTGTGCAGTGTAAACGACTTTAAGTAGAAAAAGTTTTAGCGAATA
TAAAATTGCCAATTTCCGATAGGAGAATACCC
Run BLAST on NCBI

transcript from alignment at scaffold_269:303234..303770-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056214 ID=TCONS_00056214|Name=TCONS_00056214|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at scaffold_269:303234..303770- (Clytia hemisphaerica)
CGCCTAGTAATTATTATAGCAAAACATGGCCGATTCTTCAGCATTCACAG GTTGAAGTTTCGTCTGTCTCTGACGAATTTCTGTGTCAAAATTCAGCATA ACTCACCAAATGTTCAAGTTCAAGAGTATGTGCTTAATTTGCTGTGGAAA ATCAATTTTTTCTTTGGCCACTGTAATTATTATAGTTGGCGTAGTCAATT CTGTTTGATTCAGAAAATTAGCCAGTCACCCCTGACGACCAAATCCGTTG CTAAGGCTTTTATTAAATCTGGAAAGATCTCATCCATCCAATGGTTTTCG TCGACAGGTTCATCACCGAAATGGTATTGATACACGAGTTTCGAGTTAAA TCCTGTCTCGATTTCATTCCCAAAAGATAATTAAGTGAACAAACCGAACA GTATCCGTGCGGCTAGTATTTATAACGTCCTCTTTATTTTACATTTAACA TAATATGTGGGTGTGCAGTGTAAACGACTTTAAGTAGAAAAAGTTTTAGC GAATATAAAATTGCCAATTTCCGATAGGAGAATACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035395XLOC_035395Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056214-exon-scaffold_269-1575043694:303721..303770TCONS_00056214-exon-scaffold_269-1575043694:303721..303770Clytia hemisphaericaexon
TCONS_00056214-exon-scaffold_269-1575043694:303234..303515TCONS_00056214-exon-scaffold_269-1575043694:303234..303515Clytia hemisphaericaexon
TCONS_00056214-exon-scaffold_269-1510915933:303721..303770TCONS_00056214-exon-scaffold_269-1510915933:303721..303770Clytia hemisphaericaexon
TCONS_00056214-exon-scaffold_269-1510915933:303234..303515TCONS_00056214-exon-scaffold_269-1510915933:303234..303515Clytia hemisphaericaexon
TCONS_00056214-exon-scaffold_269-1491911889:303721..303770TCONS_00056214-exon-scaffold_269-1491911889:303721..303770Clytia hemisphaericaexon
TCONS_00056214-exon-scaffold_269-1491911889:303234..303515TCONS_00056214-exon-scaffold_269-1491911889:303234..303515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:303234..303770 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (1.28387 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0.455318 0.697591 0.51424 0.388115 0.976314 0.139208 0 0 0.141957 0 0 0 0 1.28387 0 0.422083 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
CGCCTAGTAATTATTATAGCAAAACATGGCCGATTCTTCAGCATTCACAGGCTTTTATTAAATCTGGAAAGATCTCATCCATCCAATGGTTTTCGTCGACAGGTTCATCACCGAAATGGTATTGATACACGAGTTTCGAGTTAAATCCTGTCTCGATTTCATTCCCAAAAGATAATTAAGTGAACAAACCGAACAGTATCCGTGCGGCTAGTATTTATAACGTCCTCTTTATTTTACATTTAACATAATATGTGGGTGTGCAGTGTAAACGACTTTAAGTAGAAAAAGTTTTAGCGAATATAAAATTGCCAATTTCCGATAGGAGAATACCC50100150200250300Sequence
Match NameE-valueIdentityDescription
back to top