TCONS_00056215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056215
Unique NameTCONS_00056215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056215 ID=TCONS_00056215|Name=TCONS_00056215|organism=Clytia hemisphaerica|type=transcript|length=1251bp
aGGACAAAAGCTTCAGATAGCACCTCTCTCACATCAACTCAATCTGCTCC
TTCATCTACCACCACGGACACGAACGTCGTTACCGCAACGAAAACGGTTA
CGTTGCctttaattaaattaaataataTTCTATCAACAAGGGACATCTCT
TTAACAACTACGACATCATTATCAACAACTTCGTCAACCAATCAAACCGC
CGTTATGACCTTGCCTTCTTTAATAAATTCAGACAATCCTAGTGCTACGG
TTTCTTCCGTGGCTAGTACGACGTCATCTTTACCGACTGAAGAGGAAACG
CAAGCTGTACGGAACGTGGAGAGTCTCAAGCACCCAGGCTTCAACTCGAA
TTCATCCATTTGGCGTGGTAGCAATGCTTCAACCGCTGATTCAGATAGCA
CCTCTCTCACATCAACTCAATCTGCTCCTTCATCTACCACCACGGACACG
AACGTCGTTACCGCAACGGAAACGGCTACGTCGCCTTTAGTTATAAAATC
AAATAAGGCTGAAGTAAGTTATCGTATTTTCTAATCGACATAGTTTCGTA
TAGGGTTGGTTCCCCCTAGGAAATTTTCCTCCCCCCTTATGAATGACTAA
GTATAAAATTTACTGCAAATAATGACATGAGATCTctcaaaaattcaata
aattgcACTCTATTTTTCATGCTCTCTTTCTACAATCCCCCTTAGAAGTA
TATCTTTGCCCCTTTTCAGAATCTCCctcctgaattttttttacctttcc
CACCCCTTTtggaaaattatctgaaaaaaataataataatgaaaagGTTT
GTGTAAAAACAACAAGCTCACCAGGGGAGATGGAATTCACCCTGGAGGCT
GAATTTACTAACCAGCCCCGGCCCCTGACCAGGGGCTTAGGGACTGGAAA
GCTAAAGATCCTTATCTAGACTAGACTATGCAAGTCACGACCCAGGCCCG
GCCCCAACAAGCGGCAAAGGGACAGTGAAGCAACCTGCAAGTCTTCTAAC
TCTCACACTCACTGATTAAACTAAAAACTGACTAAAGGATCTTCGGAGCA
GTCTTCATTACGTCAGCGTTTGCACTGCTCACCCACAAACAACTGACGTG
TGGAGGTCACAGGACCACCACAATTTTAATATGCGCAATTGCGACTTCAA
TGTTTGAAACTCAGGAGACAAGTCTCCTGGAAAGTGGTGAGTTACCCCGC
GCTGGACACCAAACCAGGATTTGACCTCCGCggcaataataataataata
a
Run BLAST on NCBI

protein sequence of TCONS_00056215-protein

>TCONS_00056215-protein ID=TCONS_00056215-protein|Name=TCONS_00056215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
RTKASDSTSLTSTQSAPSSTTTDTNVVTATKTVTLPLIKLNNILSTRDIS
LTTTTSLSTTSSTNQTAVMTLPSLINSDNPSATVSSVASTTSSLPTEEET
QAVRNVESLKHPGFNSNSSIWRGSNASTADSDSTSLTSTQSAPSSTTTDT
NVVTATETATSPLVIKSNKAEVSYRIF
Run BLAST on NCBI

transcript from alignment at scaffold_269:314017..315693-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056215 ID=TCONS_00056215|Name=TCONS_00056215|organism=Clytia hemisphaerica|type=transcript|length=1677bp|location=Sequence derived from alignment at scaffold_269:314017..315693- (Clytia hemisphaerica)
AGGACAAAAGCTTCAGATAGCACCTCTCTCACATCAACTCAATCTGCTCC
TTCATCTACCACCACGGACACGAACGTCGTTACCGCAACGAAAACGGTTA
CGTTGCCTTTAATTAAATTAAATAATATTCTATCAACAAGGGACATCTCT
TTAACAACTACGACATCATTATCAACAACTTCGTCAACCAATCAAACCGC
CGTTATGACCTTGCCTTCTTTAATAAATTCAGACAATCCTAGTGCTACGG
TTTCTTCCGTGGCTAGTACGACGTCATCTTTACCGACTGAAGAGGAAACG
CAAGCTGTACGGAACGTGGAGAGTCTCAAGCACCCAGGTATGTTAAACCC
TAATTAACCGGTCTTTCTGAGGTTAATAATCCATTTATAGCCATGCAAAA
ATAAAGTAATAAAAGTAATTAGCAAGTGTATTCTACTGTTCTACATCGTA
AAAATTGACATTTAAATAACAATGTCAATTTTATAACTGGTCACTATAAA
CCATTAACCGTTATTCAAAAAAATATAGAGCATCGCATATAGTAATCATT
CCTTTAGAGGGTTGATATTTAGAAATATTATTGGCGACCTCTTTCGTTTA
TTCCCTTTCCTGTCCACTAGCCATAGTAGGGTGGGCTATATTACCTATTT
AGACCCAGTAATCGGTATCTGTCTTTTGTTTTTGGCTCATGGAATTTGTA
ACGAAAATCAGACTGATGATATTCAGCACATCTTTCAACTAAAACTATCT
TCCTTACGAACAGGCTTCAACTCGAATTCATCCATTTGGCGTGGTAGCAA
TGCTTCAACCGCTGATTCAGATAGCACCTCTCTCACATCAACTCAATCTG
CTCCTTCATCTACCACCACGGACACGAACGTCGTTACCGCAACGGAAACG
GCTACGTCGCCTTTAGTTATAAAATCAAATAAGGCTGAAGTAAGTTATCG
TATTTTCTAATCGACATAGTTTCGTATAGGGTTGGTTCCCCCTAGGAAAT
TTTCCTCCCCCCTTATGAATGACTAAGTATAAAATTTACTGCAAATAATG
ACATGAGATCTCTCAAAAATTCAATAAATTGCACTCTATTTTTCATGCTC
TCTTTCTACAATCCCCCTTAGAAGTATATCTTTGCCCCTTTTCAGAATCT
CCCTCCTGAATTTTTTTTACCTTTCCCACCCCTTTTGGAAAATTATCTGA
AAAAAATAATAATAATGAAAAGGTTTGTGTAAAAACAACAAGCTCACCAG
GGGAGATGGAATTCACCCTGGAGGCTGAATTTACTAACCAGCCCCGGCCC
CTGACCAGGGGCTTAGGGACTGGAAAGCTAAAGATCCTTATCTAGACTAG
ACTATGCAAGTCACGACCCAGGCCCGGCCCCAACAAGCGGCAAAGGGACA
GTGAAGCAACCTGCAAGTCTTCTAACTCTCACACTCACTGATTAAACTAA
AAACTGACTAAAGGATCTTCGGAGCAGTCTTCATTACGTCAGCGTTTGCA
CTGCTCACCCACAAACAACTGACGTGTGGAGGTCACAGGACCACCACAAT
TTTAATATGCGCAATTGCGACTTCAATGTTTGAAACTCAGGAGACAAGTC
TCCTGGAAAGTGGTGAGTTACCCCGCGCTGGACACCAAACCAGGATTTGA
CCTCCGCGGCAATAATAATAATAATAA

Coding sequence (CDS) from alignment at scaffold_269:314017..315693-

>TCONS_00056215 ID=TCONS_00056215|Name=TCONS_00056215|organism=Clytia hemisphaerica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_269:314017..315693- (Clytia hemisphaerica)
GCTTCAACTCGAATTCATCCATTTGGCGTGGTAGCAATGCTTCAACCGCT
GATTCAGATAGCACCTCTCTCACATCAACTCAATCTGCTCCTTCATCTAC
CACCACGGACACGAACGTCGTTACCGCAACGGAAACGGCTACGTCGCCTT
TAGTTATAAAATCAAATAAGGCTGAAGTAAGTTATCGTATTTTCTAAAGG
ACAAAAGCTTCAGATAGCACCTCTCTCACATCAACTCAATCTGCTCCTTC
ATCTACCACCACGGACACGAACGTCGTTACCGCAACGAAAACGGTTACGT
TGCCTTTAATTAAATTAAATAATATTCTATCAACAAGGGACATCTCTTTA
ACAACTACGACATCATTATCAACAACTTCGTCAACCAATCAAACCGCCGT
TATGACCTTGCCTTCTTTAATAAATTCAGACAATCCTAGTGCTACGGTTT
CTTCCGTGGCTAGTACGACGTCATCTTTACCGACTGAAGAGGAAACGCAA
GCTGTACGGAACGTGGAGAGTCTCAAGCACCCAGGCTTCAACTCGAATTC
ATCCATTTGGCGTGGTAGCAATGCTTCAACCGCTGATTCAGATAGCACCT
CTCTCACATCAACTCAATCTGCTCCTTCATCTACCACCACGGACACGAAC
GTCGTTACCGCAACGGAAACGGCTACGTCGCCTTTAGTTATAAAATCAAA
TAAGGCTGAAGTAAGTTATCGTATTTTCTAAAGGACAAAAGCTTCAGATA
GCACCTCTCTCACATCAACTCAATCTGCTCCTTCATCTACCACCACGGAC
ACGAACGTCGTTACCGCAACGAAAACGGTTACGTTGCCTTTAATTAAATT
AAATAATATTCTATCAACAAGGGACATCTCTTTAACAACTACGACATCAT
TATCAACAACTTCGTCAACCAATCAAACCGCCGTTATGACCTTGCCTTCT
TTAATAAATTCAGACAATCCTAGTGCTACGGTTTCTTCCGTGGCTAGTAC
GACGTCATCTTTACCGACTGAAGAGGAAACGCAAGCTGTACGGAACGTGG
AGAGTCTCAAGCACCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035396XLOC_035396Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056215-proteinTCONS_00056215-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056215-exon-scaffold_269-1575043694:315357..315693TCONS_00056215-exon-scaffold_269-1575043694:315357..315693Clytia hemisphaericaexon
TCONS_00056215-exon-scaffold_269-1575043694:314017..314930TCONS_00056215-exon-scaffold_269-1575043694:314017..314930Clytia hemisphaericaexon
TCONS_00056215-exon-scaffold_269-1510915933:315357..315693TCONS_00056215-exon-scaffold_269-1510915933:315357..315693Clytia hemisphaericaexon
TCONS_00056215-exon-scaffold_269-1510915933:314017..314930TCONS_00056215-exon-scaffold_269-1510915933:314017..314930Clytia hemisphaericaexon
TCONS_00056215-exon-scaffold_269-1491911889:315357..315693TCONS_00056215-exon-scaffold_269-1491911889:315357..315693Clytia hemisphaericaexon
TCONS_00056215-exon-scaffold_269-1491911889:314017..314930TCONS_00056215-exon-scaffold_269-1491911889:314017..314930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:314017..315693 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.136191	0.199211	0	0.113147	0.642814	0.326546	0.393964	0.286863	0.20084	0.177694	0.103485	0.249432	0.203797	0.446806	0.290001	0.248973	0.178917	0.130988	0.361935	0.340865	0.131677	0.289024	0	0.21295	0.804222	0.717749	0.0466862	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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