TCONS_00056220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056220
Unique NameTCONS_00056220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056220 ID=TCONS_00056220|Name=TCONS_00056220|organism=Clytia hemisphaerica|type=transcript|length=436bp
NNTCACCCTCATCCTGGAGGAAATCAAAGACTTCATCATTGAATCTGCTA
TTGACGGTTTAACACCACCAGAGGAGATCGATGACAACATTTCAAAAATT
GGATAAATGAGATCAACTCTACGTCACCTCTTCATCAAAGTGCCGAATGA
CTCCATCGACAAAACGCTTTTCGAGTCCTACGACACAGCAATCTCTAGCA
TCCAAATGTACATCACTGATGCAAAGAAAACCAAACGTGATCAACGAGAA
TTCGTCGAGAATTCATCTAAAGAGGCAAAATCGAAATCAATCGAGTTTTC
CATTAAAAATGTTGACCACTCCCTAAAATTAATCGAATCCCAACTCTCCA
TCGATTTCAATGAAGTAACAGACACTGTCGTCCAATCTGCAAGCAAAGAT
ATTCCTGATATCACGAAGTCAATGGAGAAGATAGCA
Run BLAST on NCBI

protein sequence of TCONS_00056220-protein

>TCONS_00056220-protein ID=TCONS_00056220-protein|Name=TCONS_00056220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MRSTLRHLFIKVPNDSIDKTLFESYDTAISSIQMYITDAKKTKRDQREFV
ENSSKEAKSKSIEFSIKNVDHSLKLIESQLSIDFNEVTDTVVQSASKDIP
DITKSMEKIA
Run BLAST on NCBI

transcript from alignment at scaffold_269:10705..11140

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056220 ID=TCONS_00056220|Name=TCONS_00056220|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_269:10705..11140 (Clytia hemisphaerica)
TGCTATCTTCTCCATTGACTTCGTGATATCAGGAATATCTTTGCTTGCAG
ATTGGACGACAGTGTCTGTTACTTCATTGAAATCGATGGAGAGTTGGGAT
TCGATTAATTTTAGGGAGTGGTCAACATTTTTAATGGAAAACTCGATTGA
TTTCGATTTTGCCTCTTTAGATGAATTCTCGACGAATTCTCGTTGATCAC
GTTTGGTTTTCTTTGCATCAGTGATGTACATTTGGATGCTAGAGATTGCT
GTGTCGTAGGACTCGAAAAGCGTTTTGTCGATGGAGTCATTCGGCACTTT
GATGAAGAGGTGACGTAGAGTTGATCTCATTTATCCAATTTTTGAAATGT
TGTCATCGATCTCCTCTGGTGGTGTTAAACCGTCAATAGCAGATTCAATG
ATGAAGTCTTTGATTTCCTCCAGGATGAGGGTGANN

Coding sequence (CDS) from alignment at scaffold_269:10705..11140

>TCONS_00056220 ID=TCONS_00056220|Name=TCONS_00056220|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_269:10705..11140 (Clytia hemisphaerica)
TGCTATCTTCTCCATTGACTTCGTGATATCAGGAATATCTTTGCTTGCAG
ATTGGACGACAGTGTCTGTTACTTCATTGAAATCGATGGAGAGTTGGGAT
TCGATTAATTTTAGGGAGTGGTCAACATTTTTAATGGAAAACTCGATTGA
TTTCGATTTTGCCTCTTTAGATGAATTCTCGACGAATTCTCGTTGATCAC
GTTTGGTTTTCTTTGCATCAGTGATGTACATTTGGATGCTAGAGATTGCT
GTGTCGTAGGACTCGAAAAGCGTTTTGTCGATGGAGTCATTCGGCACTTT
GATGAAGAGGTGACGTAGAGTTGATCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035401XLOC_035401Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056220-exon-scaffold_269-1491911889:10705..11140TCONS_00056220-exon-scaffold_269-1491911889:10705..11140Clytia hemisphaericaexon
TCONS_00056220-exon-scaffold_269-1510915933:10705..11140TCONS_00056220-exon-scaffold_269-1510915933:10705..11140Clytia hemisphaericaexon
TCONS_00056220-exon-scaffold_269-1575043694:10705..11140TCONS_00056220-exon-scaffold_269-1575043694:10705..11140Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056220-proteinTCONS_00056220-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:10705..11140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.537929	0.762035	0.884796	0.346254	1.61502	0.355626	0.216566	0.200457	0.864782	1.21853	1.84517	0.785596	1.09337	1.72714	0	0	0	0	0.996836	2.13271	0.15111	0	0	0	0.839006	0.61326	0.428608	0	0.346939	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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