TCONS_00056221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056221
Unique NameTCONS_00056221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056221 ID=TCONS_00056221|Name=TCONS_00056221|organism=Clytia hemisphaerica|type=transcript|length=612bp
GCGACCCTGACTTTGACGTGACGATGGGTAGTTTCGATAACGCGGAGATA
TGCGAACTTGttggtttatttattttgaacaCCCTTGGTGACAAATACGG
TCGTTCGAAATCTGGTTTATACTGTGATGATGGTCTCAGTTGTTTTCTAC
GTTCGTTGGGTCTACCACCAGATAAAATCAGAAAGGACTTCATTGAACTC
TTCAAACGTGAATTCGATTTAAAAATCACGATAGAATCGAACCTTCAAGT
TGTGCATTTCCTCGATATTACCTTTAACCTAAAAAATGGAACTTATAAAC
CATATTCCAAACCGAACAACGATATAATGTATATTAACACAAACTCTAAT
CACCCACCAAATGTAATAAAATACATACCGTCTATGATCTCGGatcgaat
ttcaaaaatttcatccagtgaaaaaatcttcaaaaaagcagCACCACAAT
ATAACAATGCACTTACATCAAGCGGTTACAAAGAATCAATCACCTAcaaa
aaacgaacaaataaTCGCCCAAgatcaagaaaacgaaaaattATATGGTT
TAATCCACCATTCAGTTTGAATGTCAAAACTAACGTTGCAAAAAGATTTC
TTGCGATCGTCG
Run BLAST on NCBI

protein sequence of TCONS_00056221-protein

>TCONS_00056221-protein ID=TCONS_00056221-protein|Name=TCONS_00056221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
DPDFDVTMGSFDNAEICELVGLFILNTLGDKYGRSKSGLYCDDGLSCFLR
SLGLPPDKIRKDFIELFKREFDLKITIESNLQVVHFLDITFNLKNGTYKP
YSKPNNDIMYINTNSNHPPNVIKYIPSMISDRISKISSSEKIFKKAAPQY
NNALTSSGYKESITYKKRTNNRPRSRKRKIIWFNPPFSLNVKTNVAKRFL
AIV
Run BLAST on NCBI

transcript from alignment at scaffold_269:12522..13133

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056221 ID=TCONS_00056221|Name=TCONS_00056221|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at scaffold_269:12522..13133 (Clytia hemisphaerica)
CGACGATCGCAAGAAATCTTTTTGCAACGTTAGTTTTGACATTCAAACTG
AATGGTGGATTAAACCATATaatttttcgttttcttgatcTTGGGCGAtt
atttgttcgttttttgTAGGTGATTGATTCTTTGTAACCGCTTGATGTAA
GTGCATTGTTATATTGTGGTGctgcttttttgaagattttttcactggat
gaaatttttgaaattcgatCCGAGATCATAGACGGTATGTATTTTATTAC
ATTTGGTGGGTGATTAGAGTTTGTGTTAATATACATTATATCGTTGTTCG
GTTTGGAATATGGTTTATAAGTTCCATTTTTTAGGTTAAAGGTAATATCG
AGGAAATGCACAACTTGAAGGTTCGATTCTATCGTGATTTTTAAATCGAA
TTCACGTTTGAAGAGTTCAATGAAGTCCTTTCTGATTTTATCTGGTGGTA
GACCCAACGAACGTAGAAAACAACTGAGACCATCATCACAGTATAAACCA
GATTTCGAACGACCGTATTTGTCACCAAGGGtgttcaaaataaataaacc
aaCAAGTTCGCATATCTCCGCGTTATCGAAACTACCCATCGTCACGTCAA
AGTCAGGGTCGC

Coding sequence (CDS) from alignment at scaffold_269:12522..13133

>TCONS_00056221 ID=TCONS_00056221|Name=TCONS_00056221|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_269:12522..13133 (Clytia hemisphaerica)
GACGATCGCAAGAAATCTTTTTGCAACGTTAGTTTTGACATTCAAACTGA
ATGGTGGATTAAACCATATaatttttcgttttcttgatcTTGGGCGAtta
tttgttcgttttttgTAGGTGATTGATTCTTTGTAACCGCTTGATGTAAG
TGCATTGTTATATTGTGGTGctgcttttttgaagattttttcactggatg
aaatttttgaaattcgatCCGAGATCATAGACGGTATGTATTTTATTACA
TTTGGTGGGTGATTAGAGTTTGTGTTAATATACATTATATCGTTGTTCGG
TTTGGAATATGGTTTATAAGTTCCATTTTTTAGGTTAAAGGTAATATCGA
GGAAATGCACAACTTGAAGGTTCGATTCTATCGTGATTTTTAAATCGAAT
TCACGTTTGAAGAGTTCAATGAAGTCCTTTCTGATTTTATCTGGTGGTAG
ACCCAACGAACGTAGAAAACAACTGAGACCATCATCACAGTATAAACCAG
ATTTCGAACGACCGTATTTGTCACCAAGGGtgttcaaaataaataaacca
aCAAGTTCGCATATCTCCGCGTTATCGAAACTACCCATCGTCACGTCAAA
GTCAGGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035402XLOC_035402Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056221-proteinTCONS_00056221-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056221-exon-scaffold_269-1491911889:12522..13133TCONS_00056221-exon-scaffold_269-1491911889:12522..13133Clytia hemisphaericaexon
TCONS_00056221-exon-scaffold_269-1510915933:12522..13133TCONS_00056221-exon-scaffold_269-1510915933:12522..13133Clytia hemisphaericaexon
TCONS_00056221-exon-scaffold_269-1575043694:12522..13133TCONS_00056221-exon-scaffold_269-1575043694:12522..13133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:12522..13133 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.257541	0.498384	0.487591	0.118719	0.0938133	0.226363	0.105959	0.0741846	0.183779	0	0.0586302	0.175646	0.425624	0.249943	0.160937	0.0660869	0.0677369	0.655075	0	0.170233	0.249101	0	0.183535	0.0945183	0.168711	0.120712	0.257655	1.27024	1.49328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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