TCONS_00056226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056226
Unique NameTCONS_00056226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056226 ID=TCONS_00056226|Name=TCONS_00056226|organism=Clytia hemisphaerica|type=transcript|length=498bp
agaaaaaaggaaaatacaccgggaagtttttgaaccacaatcgatttgta
agtgctctaaagtaggttggaagggtagagttttaactccgagttttaac
atgagacttaggaccttagaatctgaggatcGAAAGGCGANAAATTTTTG
ACCTACTTGGCAAAATTCCTAAATACGCCACTGCGAATCAATTATAAAAT
CAATTAATACCTTTAGTAATCAAAGTTTTCTTTATGATATGGTCAACGAG
TTCATATTTCCCCATCATCTGGAGCTCCCTCTTTAGATCGAGCCATGAGA
TATCTTCCAAACTTTCTGAGAATCTTCTTTGTGAATCGTCATCGGTAATA
CGAAGTTGTTTGAGAAGTTTTTTGGATTCTTTTTCCGTCAGTTCTTGAGA
AATGTATTCGNtagcccaaaatcgactttctcgccggaactttaaatctt
gaaaaacgttaaaataaccaaaattatcaaaatattatgacctttatt
Run BLAST on NCBI

transcript from alignment at scaffold_269:104053..104550

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056226 ID=TCONS_00056226|Name=TCONS_00056226|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_269:104053..104550 (Clytia hemisphaerica)
aataaaggtcataatattttgataattttggttattttaacgtttttcaa
gatttaaagttccggcgagaaagtcgattttgggctaNCGAATACATTTC
TCAAGAACTGACGGAAAAAGAATCCAAAAAACTTCTCAAACAACTTCGTA
TTACCGATGACGATTCACAAAGAAGATTCTCAGAAAGTTTGGAAGATATC
TCATGGCTCGATCTAAAGAGGGAGCTCCAGATGATGGGGAAATATGAACT
CGTTGACCATATCATAAAGAAAACTTTGATTACTAAAGGTATTAATTGAT
TTTATAATTGATTCGCAGTGGCGTATTTAGGAATTTTGCCAAGTAGGTCA
AAAATTTNTCGCCTTTCgatcctcagattctaaggtcctaagtctcatgt
taaaactcggagttaaaactctacccttccaacctactttagagcactta
caaatcgattgtggttcaaaaacttcccggtgtattttccttttttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035407XLOC_035407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056226-exon-scaffold_269-1491911889:104053..104550TCONS_00056226-exon-scaffold_269-1491911889:104053..104550Clytia hemisphaericaexon
TCONS_00056226-exon-scaffold_269-1510915933:104053..104550TCONS_00056226-exon-scaffold_269-1510915933:104053..104550Clytia hemisphaericaexon
TCONS_00056226-exon-scaffold_269-1575043694:104053..104550TCONS_00056226-exon-scaffold_269-1575043694:104053..104550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:104053..104550 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.881644	0.716955	0.627273	1.67422	3.00268	3.99477	10.9399	10.2645	12.9913	16.438	15.1676	11.9463	22.7355	17.9896	26.4606	28.701	16.5073	25.329	29.0037	32.7197	15.04	17.436	10.1641	13.0218	19.0139	13.4614	20.6919	16.3445	18.042	17.6612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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