TCONS_00056228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056228
Unique NameTCONS_00056228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056228 ID=TCONS_00056228|Name=TCONS_00056228|organism=Clytia hemisphaerica|type=transcript|length=497bp
ACTAAATCGATGCTCTTTGCCACATCTCAAATGGCAAGGAGGCAtaattt
tgaattcgaaatcAAGTCAAATAACGAAAATGTGATTGAGCGTGTTCCCC
TATATTCAAGCTGTTAGGAATCATCTTCACCGAAAACCTAACATGGAATG
AACATGTCAAAAAAATCGTCATTAAAGCATATGGCACGCTGAAGAGTCTA
TCCCTCATCAAACGATATTTACCATACCGTGTACGACGCCAATTGGCAGA
ATCTCTTGTATTGAGTAAAATAGAATATGGTAATACCGTAATTCACAACG
CACCACAATATCTATTCAATCAATTACAACGAGTCCAAAATGCCACAGCT
AGCTTCGTCCGGAAGAGCTACTCTCGCAAGTCTGACGTAATAGATATATG
AAATGGCTACCTGTCAAAGAACGGACCGAATACAGTTTGGCTAAACTTGC
GTGGAAATCAGTGAATATGAATGACTGGCCCAAATTCCTCCCTATGG
Run BLAST on NCBI

transcript from alignment at scaffold_269:132873..133369

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056228 ID=TCONS_00056228|Name=TCONS_00056228|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at scaffold_269:132873..133369 (Clytia hemisphaerica)
CCATAGGGAGGAATTTGGGCCAGTCATTCATATTCACTGATTTCCACGCA
AGTTTAGCCAAACTGTATTCGGTCCGTTCTTTGACAGGTAGCCATTTCAT
ATATCTATTACGTCAGACTTGCGAGAGTAGCTCTTCCGGACGAAGCTAGC
TGTGGCATTTTGGACTCGTTGTAATTGATTGAATAGATATTGTGGTGCGT
TGTGAATTACGGTATTACCATATTCTATTTTACTCAATACAAGAGATTCT
GCCAATTGGCGTCGTACACGGTATGGTAAATATCGTTTGATGAGGGATAG
ACTCTTCAGCGTGCCATATGCTTTAATGACGATTTTTTTGACATGTTCAT
TCCATGTTAGGTTTTCGGTGAAGATGATTCCTAACAGCTTGAATATAGGG
GAACACGCTCAATCACATTTTCGTTATTTGACTTgatttcgaattcaaaa
ttaTGCCTCCTTGCCATTTGAGATGTGGCAAAGAGCATCGATTTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035409XLOC_035409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056228-exon-scaffold_269-1491911889:132873..133369TCONS_00056228-exon-scaffold_269-1491911889:132873..133369Clytia hemisphaericaexon
TCONS_00056228-exon-scaffold_269-1510915933:132873..133369TCONS_00056228-exon-scaffold_269-1510915933:132873..133369Clytia hemisphaericaexon
TCONS_00056228-exon-scaffold_269-1575043694:132873..133369TCONS_00056228-exon-scaffold_269-1575043694:132873..133369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:132873..133369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.159	0.675741	1.73327	1.07167	1.27619	0.584504	0.465487	0.676248	1.50753	0	1.3224	1.52197	1.15625	1.24846	0.403019	0	1.90701	1.29563	4.10679	2.51626	4.09977	5.10188	1.83825	2.30088	0.960114	0.162555	2.93327	2.70227	2.6654	2.5768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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