|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056239 ID=TCONS_00056239|Name=TCONS_00056239|organism=Clytia hemisphaerica|type=transcript|length=1057bp
CCAAAACTTGAAATAAcctgaaatgtaaaaatttctgattttttagaTTA
CAAATACAATATACCTTAAACTTCAGTAACTGTATCGGTACTTTGCGCCT
TACTTTGGCTTCAAATGTTATTTCGACCAAAACGAGAAAATTGGTCAAAG
ATACGGATGTACGATTGCAATGATTGATGGTGATGATGATGTTCTCGTTT
TATAACAGGCTACGCTCAGTACGCTTCAATGCCGTTAAAAAACCCAATAC
TAATTTACGAACTTATTTTTCGACCAGCTATGTTAACTTATGGTGTATGG
GAACAAATGCGTATGGACCATGGTCAAAAATTCTGTCTTGTCAGTTTCGT
TCAAACTATTATGTCACACCATAGGCTTGTTAGTACTTCTGAACCTTTTC
GCATTACAACTTCGACGAAAAACAACGTTATTGAACGCTTTTGGCCCGAG
ATGAATACGCGCGTGAACTACCCTCTTAAACGTGCATTGAACACTATCAT
AGCTAATGACATCACGGACACTCTTGATGAACGTGACCCCGTATTCAAGT
TTTGTTTATCCTGGCTTACGTTGTATATTTCAAAAGACGCAGTGGAACAT
TTGCTCAATTCATGGAACCATCATCGAGTACCAGGTTTTAATGGTTGCAT
ACCCGCAGAGAACATGCAGCAATCTATGCACATGGCACAAGTTGAAGAAT
TTTTGGTTCCCTCGACCCCTGAGCTTGTTCGAAATTACGAAGAAAGGGGA
GGTCAGCTTACTCGTGATCCACAGTTTGGCATCAACCCGTTTTGTGATAC
AGCAGACCTTTATCAGTCTCGTCATAGGGTTTTTGTGGCAAATACTCCTG
cccctgaaataattttttcacaTCTTGGCCATGGTGATTATGATAGCTTG
GAACACGCTTTGCGATTATTCCACTACTTAGTAACAGTGTTTTTAAAAAC
GATATTTTTGAGTGTTTGTATACGTCAGTCTAGTCGGCTTCCGAAAATGG
AAGTTTTTTTGCAtccaaaaatttaagtttttttttgttttgacatcAAA
ATTGTCG Run BLAST on NCBI transcript from alignment at scaffold_269:247795..248851 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056239 ID=TCONS_00056239|Name=TCONS_00056239|organism=Clytia hemisphaerica|type=transcript|length=1057bp|location=Sequence derived from alignment at scaffold_269:247795..248851 (Clytia hemisphaerica)
CGACAATTTTgatgtcaaaacaaaaaaaaacttaaatttttggaTGCAAA
AAAACTTCCATTTTCGGAAGCCGACTAGACTGACGTATACAAACACTCAA
AAATATCGTTTTTAAAAACACTGTTACTAAGTAGTGGAATAATCGCAAAG
CGTGTTCCAAGCTATCATAATCACCATGGCCAAGAtgtgaaaaaattatt
tcaggggCAGGAGTATTTGCCACAAAAACCCTATGACGAGACTGATAAAG
GTCTGCTGTATCACAAAACGGGTTGATGCCAAACTGTGGATCACGAGTAA
GCTGACCTCCCCTTTCTTCGTAATTTCGAACAAGCTCAGGGGTCGAGGGA
ACCAAAAATTCTTCAACTTGTGCCATGTGCATAGATTGCTGCATGTTCTC
TGCGGGTATGCAACCATTAAAACCTGGTACTCGATGATGGTTCCATGAAT
TGAGCAAATGTTCCACTGCGTCTTTTGAAATATACAACGTAAGCCAGGAT
AAACAAAACTTGAATACGGGGTCACGTTCATCAAGAGTGTCCGTGATGTC
ATTAGCTATGATAGTGTTCAATGCACGTTTAAGAGGGTAGTTCACGCGCG
TATTCATCTCGGGCCAAAAGCGTTCAATAACGTTGTTTTTCGTCGAAGTT
GTAATGCGAAAAGGTTCAGAAGTACTAACAAGCCTATGGTGTGACATAAT
AGTTTGAACGAAACTGACAAGACAGAATTTTTGACCATGGTCCATACGCA
TTTGTTCCCATACACCATAAGTTAACATAGCTGGTCGAAAAATAAGTTCG
TAAATTAGTATTGGGTTTTTTAACGGCATTGAAGCGTACTGAGCGTAGCC
TGTTATAAAACGAGAACATCATCATCACCATCAATCATTGCAATCGTACA
TCCGTATCTTTGACCAATTTTCTCGTTTTGGTCGAAATAACATTTGAAGC
CAAAGTAAGGCGCAAAGTACCGATACAGTTACTGAAGTTTAAGGTATATT
GTATTTGTAAtctaaaaaatcagaaatttttacatttcaggTTATTTCAA
GTTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056239-exon-scaffold_269-1491911889:247795..248851 | TCONS_00056239-exon-scaffold_269-1491911889:247795..248851 | Clytia hemisphaerica | exon |
| TCONS_00056239-exon-scaffold_269-1510915933:247795..248851 | TCONS_00056239-exon-scaffold_269-1510915933:247795..248851 | Clytia hemisphaerica | exon |
| TCONS_00056239-exon-scaffold_269-1575043694:247795..248851 | TCONS_00056239-exon-scaffold_269-1575043694:247795..248851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:247795..248851 . |
Blast
The following BLAST results are available for this feature:
|
