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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056247 ID=TCONS_00056247|Name=TCONS_00056247|organism=Clytia hemisphaerica|type=transcript|length=1587bp
GAAAAATGTCATTATTTTTGGAACcaataaatcttaaaaaaaaagacgaa
aaaaagataaaacataaaaatcttTTCTGCGTAAAAACAAAGATATGATA
CAATTAAGAAGCTTGGCATTTTTCAGTATAAAGACCACTATAATGTCATA
TGTTCAGAGCCAAGTCAACCATAGATGGCGTGCGAAACGTAatgttattg
tttcaaacttaaACGTAGATCCTTGTGCTTTATGCCAGTGAATTAATATC
AAAAGAGAAATGAGAATCAATGCTTCTAGAACAATGGATAGCGAAACAAT
GCAATTCCCACGTTAGGTCCATACATCTCCCACAGGTGTTCAAACCGTCA
TCAGACAAACTCCAGTTAAGGCTGGTCATCGTGTTATGTTTAATACCGAA
GGATGGCTAAATTTTCCCGGGGAAACTttaacagtagcgtagacaggggc
AGCAGATGTTTGTGatactgtaattatctattcatactatgaaaaatata
attagtgtgtcataaaaatctgagTCTCCTACACAAGTTTTGCGCCCacc
ttgtctacgctactgtttagccaccgtagtacagtggtagagcatccggc
tacggtttgcaaggttgtgggttcaacccccagccgggtcataccaaaga
ttcccaaaatggtacttgatgcctctctgcttgatgctcagcaactaaga
gaaggatcaagggtaagtggagaaggatcaagggtaagtggagaaatcca
gggagaaagagtggcgccctcccctaccttcgggtagatagctatcgaaa
gaggagccttcgggtcgcctccgactgcggtcacaGACATACTTACTTTA
CTGTTTAATTTGCCACTTTACAATGGAAAAAGACCGACACACTGGGTAGG
TTCAAAATTAGTATCAACTTGTAAGACGAtcaatttcaaggccgttgtgT
GTTGTTTACGCATCTGTACGCAGCATTTTTGCCGGGATGCCCGGAAAACC
AGCGGAAAGATTCCGAAAATGCGTAAAGAACGGTTCCCCGGGAACAAGAA
AGCTTAGCCATCCTACGGTGCACGAGATGATCTGTTTTAGACTACGTTCA
GACGCTACGGTTCCGTTCCACTCCGAAGCGAAATGaaaccattctattgg
ttaaattcaagttttatgtcacttctaaccaatagaatggcttcatttcg
tttcagagcgaaacggaaccgttacgtgcgaacatggtcttagatGCTCC
AGATTCCGTCCGTAAAAAATACCCTCATCCGGACAATTTCTTAATATTCT
CCATGACATCTGTAAAGGCATGAGATTCGATCAATTTCCTGAAACCATCA
TTAATCTTCGGAGCTTCAGTCAAGAGAAACCAACGACATTCAATATTGAC
GTAATCAAGTTTGTCATCGATGTCTACCCCGTCATCATCTTGATCGTTTG
TGATTGGTTTATTTTGAGCAGCATCTTCACCTGATTGGCTAGTTTTTCGA
TCACCCTCTTGTTCTGGAAGGTTGTTCTCATCCTGTTTTGATTCTATTAG
AAATAAtcataaaatttaataaaatctttgaatCTGT Run BLAST on NCBI transcript from alignment at scaffold_27:151460..153118+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056247 ID=TCONS_00056247|Name=TCONS_00056247|organism=Clytia hemisphaerica|type=transcript|length=1659bp|location=Sequence derived from alignment at scaffold_27:151460..153118+ (Clytia hemisphaerica)
GAAAAATGTCATTATTTTTGGAACcaataaatcttaaaaaaaaagacgaa
aaaaagataaaacataaaaatcttTTCTGCGTAAAAACAAAGATATGATA
CAATTAAGAAGCTTGGCATTTTTCAGTATAAAGACCACTATAATGTCATA
TGTTCAGAGCCAAGTCAACCATAGATGGCGTGCGAAACGTAatgttattg
tttcaaacttaaACGTAGATCCTTGTGCTTTATGCCAGTGAATTAATATC
AAAAGAGAAATGAGAATCAATGCTTCTAGAACAATGGATAGCGAAACAAT
GCAATTCCCACGTTAGGTCCATACATCTCCCACAGGTGTTCAAACCGTCA
TCAGACAAACTCCAGTTAAGGCTGGTCATCGTGTTATGTTTAATACCGAA
GGATGGCTAAATTTTCCCGGGGAAACTttaacagtagcgtagacaggggc
AGCAGATGTTTGTGatactgtaattatctattcatactatgaaaaatata
attagtgtgtcataaaaatctgagTCTCCTACACAAGTTTTGCGCCCacc
ttgtctacgctactgtttagccaccgtagtacagtggtagagcatccggc
tacggtttgcaaggttgtgggttcaacccccagccgggtcataccaaaga
ttcccaaaatggtacttgatgcctctctgcttgatgctcagcaactaaga
gaaggatcaagggtaagtggagaaggatcaagggtaagtggagaaatcca
gggagaaagagtggcgccctcccctaccttcgggtagatagctatcgaaa
gaggagccttcgggtcgcctccgactgcggtcacaGACATACTTACTTTA
CTGTTTAATTTGCCACTTTACAATGGAAAAAGACCGACACACTGGGTAGG
TTCAAAATTAGTATCAACTTGTAAGACGAtcaatttcaaggccgttgtgT
GTTGTTTACGCATCTGTACGCAGCATTTTTGCCGGGATGCCCGGAAAACC
AGCGGAAAGATTCCGAAAATGCGTAAAGAACGGTTCCCCGGGAACAAGAA
AGCTTAGCCATCCTACGGTGCACGAGATGATCTGTTTTAGACTACGTTCA
GACGCTACGGTTCCGTTCCACTCCGAAGCGAAATGaaaccattctattgg
ttaaattcaagttttatgtcacttctaaccaatagaatggcttcatttcg
tttcagagcgaaacggaaccgttacgtgcgaacatggtcgtAGATGCTCC
GGATTCCGTCCGTAAAAAATACCCTCATCCGGACAATTTCTTAANtcgtg
cgaacatggtcttagatGCTCCAGATTCCGTCCGTAAAAAATACCCTCAT
CCGGACAATTTCTTAATATTCTCCATGACATCTGTAAAGGCATGAGATTC
GATCAATTTCCTGAAACCATCATTAATCTTCGGAGCTTCAGTCAAGAGAA
ACCAACGACATTCAATATTGACGTAATCAAGTTTGTCATCGATGTCTACC
CCGTCATCATCTTGATCGTTTGTGATTGGTTTATTTTGAGCAGCATCTTC
ACCTGATTGGCTAGTTTTTCGATCACCCTCTTGTTCTGGAAGGTTGTTCT
CATCCTGTTTTGATTCTATTAGAAATAAtcataaaatttaataaaatctt
tgaatCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056247-exon-scaffold_27-1491911889:151460..152692 | TCONS_00056247-exon-scaffold_27-1491911889:151460..152692 | Clytia hemisphaerica | exon |
| TCONS_00056247-exon-scaffold_27-1510915933:151460..152692 | TCONS_00056247-exon-scaffold_27-1510915933:151460..152692 | Clytia hemisphaerica | exon |
| TCONS_00056247-exon-scaffold_27-1575043694:151460..152692 | TCONS_00056247-exon-scaffold_27-1575043694:151460..152692 | Clytia hemisphaerica | exon |
| TCONS_00056247-exon-scaffold_27-1491911889:152765..153118 | TCONS_00056247-exon-scaffold_27-1491911889:152765..153118 | Clytia hemisphaerica | exon |
| TCONS_00056247-exon-scaffold_27-1510915933:152765..153118 | TCONS_00056247-exon-scaffold_27-1510915933:152765..153118 | Clytia hemisphaerica | exon |
| TCONS_00056247-exon-scaffold_27-1575043694:152765..153118 | TCONS_00056247-exon-scaffold_27-1575043694:152765..153118 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:151460..153118 + |
Blast
The following BLAST results are available for this feature:
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