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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056251 ID=TCONS_00056251|Name=TCONS_00056251|organism=Clytia hemisphaerica|type=transcript|length=3711bp
CGAGCTACGGGATCTATCAGACATGTGGAGGAACTTCCCGCGAGTTGACG
GTGATCAAATTATTCGGGAATTCACTCTGAGGTCAGAGTTGAGATCGGTC
AAAGCAGTCGCAATCAATTTGTTGAAGCGGGTCCACAGTGTGAGCGATTA
ACCTTGAAGGTCAAGAAATATCACATAGTTGTCCATTTTATTTTGGTCCG
ATTGACAATCTTACTTCCGTTTGTGTAGATTGCCATTTGGATGTCGAACG
GTGATGATGCAATGTACTTGTAAGGTAATTTTATGTAATATTTGGTCATT
GATGTAAAAAACCTGAGAAATTTTGTAGTAATCATTGTTGCAAGTCTTTC
TTTAGCTTCTTTATatttatatacatttttttataattgtaatcagtcat
ataattaaAAGGAGTAATATGAAGGAGTAAGAAAAACCCAAAGGGCTCAA
ACATAACACTTACATTTGAGAAACAGAAAGGGGGAAATGGTCAATCAGAA
TGTAATTTTCGAAGCAGAATTCGATTGATTTGCTCAAAGATCCATGATGA
aatatttctatttattttttgtccCGTATGTTACgaacttgtaaaatatt
ttacGCAATAATTCATTCCAATATATCATAATTACCACAACTGAAGAAGT
TTAGCTGTTGAAACTgcaatctttttgaaaatgtcgtCTCACGCAAGCAA
CTACCGATATGCTGTCGAGCTAGGGACCTATCAGACATGTGGAGGAACTT
CCTGCGAGTTGGTGGTGATCAAATTGTTCGGAAATTCACTCTGAGGTCAG
AGTTGAGGTGAGTAACTTACTTCAATTTaataatctttttaaattttatc
caGTATTTCTACCTACGTTTTACAACAACAATCACTCGTAATATAAAATA
CTGTATAAACTCAACAGGTAATGGCttaaattttctattgtttaccGTCT
AGATCGGTCAAAGCCGTCGCAATCAATTTGTTGAAGCGGGTCCACAGTGT
GAGCGATTAACCTTGAAGGTCAAGAAATATCACATAGTTGTCCATTTTAT
TTTGGTCCGATTGACAATCTTACTTCCGTTTGTGTAGATTGCCATTTGGA
TGTCGAACGATGATGATGCAATGTACTTGTAAGGTAATTTTATGTAATAT
TTGGTCATTAGtgtaaaaaacctaaaaaaatttGTAGTAATCATTGTTGC
AAGTCTTTCTTTAGCTTCTTTATatttatatacatttttttataattgta
atcagtcatataattaaAAGGAGTAATATGAAGGAGTAAGAAAAACCCAA
AGGGCTCAAACATAACACTTACATTTGAGAAACAGAAAGGGGGAAATGGT
CAATCAGAATGTAATTTTCGAAGCAGAATTCGATGGATTTGCTCAAAGat
ccatgatgaaatttttctatttattttttgtccCATATGTTACGAACTTG
TTAAAATATTTTACGCAATAATTCATTCCAATATATCATAATTACCACAA
CTGAAGAAGTTTAGCTGTTGAAACTgcaatctttttgaaaatgacgTCTC
ACGCAAGCAACTACCGATATGCTGTCGAGCTAGGGACCTATCAGACATGT
GGAGGAACTTCCCGCGAGTTGGCGGTGATCAAATTGTTCGGAAATTCACT
CTGAGGTCAGAGTTGAGGTGAGTAACTTACTtcaattttgaatgaatttg
ctgttattgataatctttttaaagtttattcAGTATTTCTACCTACGTTT
TACAACAACAATCATTAATAATATAAAATACTGTATAAAATCACCAGGTA
ATGGCttaaattttctattgtttaccGTCTAGATTGGTCAAAGCCGTTGC
AATCAATCTATTGAACCCGTCCACGATATGAGTGATGAGGCTGCTCGTAC
AGCGATGGGGACAGCCCATCTTGGGGTTTATGAATTTACATCAGCAACCC
TGGACCGTGAGCACCTGGAGATCTCATGGTAGATGGAGGGGAACCTCTTC
AATGTAGCTGCAGGTGCTGGAGGCTTCGATCCGCCTCCCTGGAACAGGTG
GTTTGTGGATGCGATCCAAAACATCCACGAGGTAGTGGATGATACAGTAA
GAGATTATAGGTTATCGGTTATACAGTATGGTTACAGTACgttaaataca
atttttttaattacttACAGGAAGAGGCTTTCCATAGCAGAAGCGGTCAA
TGAGAAATGTACGGACAAAGGCCAATATCTGTTACCAGAATTAGAACTAA
CGACATTCCGTTCACAGCTATAAAAGCTGCGGAATTAGACAACGAAGACG
GAGTTCGAAAGAGACATTATGGGAGTATGACCTAATTTCACTTAGATATT
TCATAGAACTAAATGCTTTGGAAATATTATTATGAGTTGAATTAAGAATA
TAAATTGATCGATGGTACGATACCATAAACAATTTAGATTACTGATCTCT
CCGCTGACCATTCTCCCCTCTTTTAGCCCAGTCATTTTGTTATAATTGta
atcagtcatataattaaAAGGAGTAATATGAAGGAGTAAGAAAAACCCAA
AGGGCTCAAACATAACACTTACGTTTGAGAAACAGAAAGGGGGAAATGGT
CAATCAGAATGTAATTTTCGAAGCTGAATTCGATGGATTTGCTCAAAGAT
CCATGAtgaattttttctatttattttttttttcccgTATGTTAAAAACT
TGTTAAACTATTTTACGCAATAATTCATTCCAATATATCATAATTACCAC
AACTGAAGAAGTTTAGCTGTTGAAActgcaattttttttaaaaatgtcgg
CTCACGCAAGTAATTACCGTTATGCTATCAAGCTACGGGACCTATCAGAC
ATGTGGAGGAACTTCCTGCAAGGAAGTGTTGAGGTGAGTAACTTACTtca
attttgaatgaatttgctgttattaataatctttttaaagtttatcCAGT
ATTTCTGAGCATTCTCCCCTTTTTTAGCCCAGTCTTCAGAACTAAGAAGA
ATAAAGCACTCCAATCCaaacaaaatgagaaaaaggTGATAATCAATGGA
AGAAGGAAATGTTTCGATTTGATGAGTGCCGAAACGTTTATGCGGAACAT
TGGACAACTTCAGAAGCTCTACTTCAGACATCGCAAAGCACCACCCATGT
GGACAGGTGGCTGTGAGGAAAGATATGTCACTAAAACACTTGGGGGCATG
TGTTGAGGGCAACAATCTTTCTTGCCCCCGTGATATCAAATCACGATTAA
AACCAAAAACCCTTCCCTTCGGTTATAGAATCTTAACCCTTCTTAATTTT
GTGAAATCTTGACCCCTTAATaaagttataaaattttaatgacttGAATA
TGTGAACCATGCAACAACAGGAAACTTATACCGCGTATACAGAGTTTCAT
TAGCTCGCACCGTATGCCTGAACCTAAAAGTGAAAatctttatatttctt
ttgttatacttttttttatatttcatttttgtaGGAGTAGAGACCTAGTa
tataaaaatgtcaaatttgttCTTTATAGGTAGGCAAGTGAAGTTATTTC
AGTCTTCGTCAAATATTCTGACAATATAGgtgtaaatttttcttttatga
tTCTATTATAATCAGAGCTAACGAACCGAGTGAtgacaagaaaataaaaa
ctattaaaaatatacgattttcaacactaaagtgattaacatcgtagATG
AAACCtaattg Run BLAST on NCBI transcript from alignment at scaffold_27:5502..10259- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056251 ID=TCONS_00056251|Name=TCONS_00056251|organism=Clytia hemisphaerica|type=transcript|length=4758bp|location=Sequence derived from alignment at scaffold_27:5502..10259- (Clytia hemisphaerica)
CGAGCTACGGGATCTATCAGACATGTGGAGGAACTTCCCGCGAGTTGACG
GTGATCAAATTATTCGGGAATTCACTCTGAGGTCAGAGTTGAGGTGAGTA
ACTTACTTCTATTTTGAATGAATTTGCTGTTATTAATAATCTTTTTAAAG
TTTATCCAGTATTTCTACCTACGTTTTACAACAACAATCACTCATAATGT
AAAATACTGTATAAACTCACCAGGTAATGGCTTAAATTTTCTATTGTTTA
CCGTCTAGATCGGTCAAAGCCGTCGCAATCAATTTGTTGAAGCGGGTCCA
CAGTGTGAGCGATTAACGTTGAAGGTCAAGAAATATCGCATAGTTGTCCA
TTTGATTTTGGTCCGAGTGACAATCTTACTTCCGTTTGTGTAGATTGTCA
TTTGGATGTCGAACGATGATGATGCAATGTACTTGTAAGTTAATTTTATT
TAATATTTAGTCATTAATGTAAAAAACCTGAGATACTTTGTAGTAATCAT
TATTGCAAGTCATTTTTTAGCTTCTTTATATCTATATACATTTTTTATAA
TTGTAATCAGTCATATAAATAAAAGGAGTAATATGAAGGAGTAAGAAAAA
CCCAAAGGGCTCAAACATAACACTTACATTTGAGAAACAGAAAGGGGGAA
ATGGTCAATCAGAATGTAATTTTCGAAGCTGAATTCGATGGATTCGCTCA
AAGATCCATGATGAAAATTTTCTATTTATTTTTTTCTCCCGTATGTTACA
AACTTGTTAAAATATTTTACACAATAATTCATTCCAATATATCATAATTA
CCACAACTAAAGAAGTTTAGCTGTTGAAACTGCATTCTTTTTTAAAGATG
TCGGCTCACGCAAGCAATTACCGTTGTGCTGTCGAGCTACGGGATCTATC
AGACATGTGGAGGAACTTCCCGCGAGTTGACGGTGATCAAATTATTCGGG
AATTCACTCTGGGGTCAGAGTTGAGGTGAGTAGCTTACTTCTATTTTGAA
TGAATTTGCTGTTATTAATAATCTTTTTAAAGCTTATCCAGTATTTCTAC
CTACGTTTTACAACAACAATCACTCGTAATGTAAAATACTGTATAAACTC
ACCAGGAAATGGCTTAAATTTTCTATTGTTTACCGTCTAGATCGGTCAAA
GCAGTCGCAATCAATTTGTTGAAGCGGGTCCACAGTGTGAGCGATTAACC
TTGAAGGTCAAGAAATATCACATAGTTGTCCATTTTATTTTGGTCCGATT
GACAATCTTACTTCCGTTTGTGTAGATTGCCATTTGGATGTCGAACGGTG
ATGATGCAATGTACTTGTAAGGTAATTTTATGTAATATTTGGTCATTGAT
GTAAAAAACCTGAGAAATTTTGTAGTAATCATTGTTGCAAGTCTTTCTTT
AGCTTCTTTATATTTATATACATTTTTTTATAATTGTAATCAGTCATATA
ATTAAAAGGAGTAATATGAAGGAGTAAGAAAAACCCAAAGGGCTCAAACA
TAACACTTACATTTGAGAAACAGAAAGGGGGAAATGGTCAATCAGAATGT
AATTTTCGAAGCAGAATTCGATTGATTTGCTCAAAGATCCATGATGAAAT
ATTTCTATTTATTTTTTGTCCCGTATGTTACGAACTTGTAAAATATTTTA
CGCAATAATTCATTCCAATATATCATAATTACCACAACTGAAGAAGTTTA
GCTGTTGAAACTGCAATCTTTTTGAAAATGTCGTCTCACGCAAGCAACTA
CCGATATGCTGTCGAGCTAGGGACCTATCAGACATGTGGAGGAACTTCCT
GCGAGTTGGTGGTGATCAAATTGTTCGGAAATTCACTCTGAGGTCAGAGT
TGAGGTGAGTAACTTACTTCAATTTAATAATCTTTTTAAATTTTATCCAG
TATTTCTACCTACGTTTTACAACAACAATCACTCGTAATATAAAATACTG
TATAAACTCAACAGGTAATGGCTTAAATTTTCTATTGTTTACCGTCTAGA
TCGGTCAAAGCCGTCGCAATCAATTTGTTGAAGCGGGTCCACAGTGTGAG
CGATTAACCTTGAAGGTCAAGAAATATCACATAGTTGTCCATTTTATTTT
GGTCCGATTGACAATCTTACTTCCGTTTGTGTAGATTGCCATTTGGATGT
CGAACGATGATGATGCAATGTACTTGTAAGGTAATTTTATGTAATATTTG
GTCATTAGTGTAAAAAACCTAAAAAAATTTGTAGTAATCATTGTTGCAAG
TCTTTCTTTAGCTTCTTTATATTTATATACATTTTTTTATAATTGTAATC
AGTCATATAATTAAAAGGAGTAATATGAAGGAGTAAGAAAAACCCAAAGG
GCTCAAACATAACACTTACATTTGAGAAACAGAAAGGGGGAAATGGTCAA
TCAGAATGTAATTTTCGAAGCAGAATTCGATGGATTTGCTCAAAGATCCA
TGATGAAATTTTTCTATTTATTTTTTGTCCCATATGTTACGAACTTGTTA
AAATATTTTACGCAATAATTCATTCCAATATATCATAATTACCACAACTG
AAGAAGTTTAGCTGTTGAAACTGCAATCTTTTTGAAAATGACGTCTCACG
CAAGCAACTACCGATATGCTGTCGAGCTAGGGACCTATCAGACATGTGGA
GGAACTTCCCGCGAGTTGGCGGTGATCAAATTGTTCGGAAATTCACTCTG
AGGTCAGAGTTGAGGTGAGTAACTTACTTCAATTTTGAATGAATTTGCTG
TTATTGATAATCTTTTTAAAGTTTATTCAGTATTTCTACCTACGTTTTAC
AACAACAATCATTAATAATATAAAATACTGTATAAAATCACCAGGTAATG
GCTTAAATTTTCTATTGTTTACCGTCTAGATTGGTCAAAGCCGTTGCAAT
CAATCTATTGAACCCGTCCACGATATGAGTGATGAGGCTGCTCGTACAGC
GATGGGGACAGCCCATCTTGGGGTTTATGAATTTACATCAGCAACCCTGG
ACCGTGAGCACCTGGAGATCTCATGGTAGATGGAGGGGAACCTCTTCAAT
GTAGCTGCAGGTGCTGGAGGCTTCGATCCGCCTCCCTGGAACAGGTGGTT
TGTGGATGCGATCCAAAACATCCACGAGGTAGTGGATGATACAGTAAGAG
ATTATAGGTTATCGGTTATACAGTATGGTTACAGTACGTTAAATACAATT
TTTTTAATTACTTACAGGAAGAGGCTTTCCATAGCAGAAGCGGTCAATGA
GAAATGTACGGACAAAGGCCAATATCTGTTACCAGAATTAGAACTAACGA
CATTCCGTTCACAGCTATAAAAGCTGCGGAATTAGACAACGAAGACGGAG
TTCGAAAGAGACATTATGGGAGTATGACCTAATTTCACTTAGATATTTCA
TAGAACTAAATGCTTTGGAAATATTATTATGAGTTGAATTAAGAATATAA
ATTGATCGATGGTACGATACCATAAACAATTTAGATTACTGATCTCTCCG
CTGACCATTCTCCCCTCTTTTAGCCCAGTCATTTTGTTATAATTGTAATC
AGTCATATAATTAAAAGGAGTAATATGAAGGAGTAAGAAAAACCCAAAGG
GCTCAAACATAACACTTACGTTTGAGAAACAGAAAGGGGGAAATGGTCAA
TCAGAATGTAATTTTCGAAGCTGAATTCGATGGATTTGCTCAAAGATCCA
TGATGAATTTTTTCTATTTATTTTTTTTTTCCCGTATGTTAAAAACTTGT
TAAACTATTTTACGCAATAATTCATTCCAATATATCATAATTACCACAAC
TGAAGAAGTTTAGCTGTTGAAACTGCAATTTTTTTTAAAAATGTCGGCTC
ACGCAAGTAATTACCGTTATGCTATCAAGCTACGGGACCTATCAGACATG
TGGAGGAACTTCCTGCAAGGAAGTGTTGAGGTGAGTAACTTACTTCAATT
TTGAATGAATTTGCTGTTATTAATAATCTTTTTAAAGTTTATCCAGTATT
TCTGAGCATTCTCCCCTTTTTTAGCCCAGTCTTCAGAACTAAGAAGAATA
AAGCACTCCAATCCAAACAAAATGAGAAAAAGGTGATAATCAATGGAAGA
AGGAAATGTTTCGATTTGATGAGTGCCGAAACGTTTATGCGGAACATTGG
ACAACTTCAGAAGCTCTACTTCAGACATCGCAAAGCACCACCCATGTGGA
CAGGTGGCTGTGAGGAAAGATATGTCACTAAAACACTTGGGGGCATGTGT
TGAGGGCAACAATCTTTCTTGCCCCCGTGATATCAAATCACGATTAAAAC
CAAAAACCCTTCCCTTCGGTTATAGAATCTTAACCCTTCTTAATTTTGTG
AAATCTTGACCCCTTAATAAAGTTATAAAATTTTAATGACTTGAATATGT
GAACCATGCAACAACAGGAAACTTATACCGCGTATACAGAGTTTCATTAG
CTCGCACCGTATGCCTGAACCTAAAAGTGAAAATCTTTATATTTCTTTTG
TTATACTTTTTTTTATATTTCATTTTTGTAGGAGTAGAGACCTAGTATAT
AAAAATGTCAAATTTGTTCTTTATAGGTAGGCAAGTGAAGTTATTTCAGT
CTTCGTCAAATATTCTGACAATATAGGTGTAAATTTTTCTTTTATGATTC
TATTATAATCAGAGCTAACGAACCGAGTGATGACAAGAAAATAAAAACTA
TTAAAAATATACGATTTTCAACACTAAAGTGATTAACATCGTAGATGAAA
CCTAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056251-exon-scaffold_27-1575043694:10167..10259 | TCONS_00056251-exon-scaffold_27-1575043694:10167..10259 | Clytia hemisphaerica | exon |
| TCONS_00056251-exon-scaffold_27-1575043694:5502..9119 | TCONS_00056251-exon-scaffold_27-1575043694:5502..9119 | Clytia hemisphaerica | exon |
| TCONS_00056251-exon-scaffold_27-1510915933:10167..10259 | TCONS_00056251-exon-scaffold_27-1510915933:10167..10259 | Clytia hemisphaerica | exon |
| TCONS_00056251-exon-scaffold_27-1510915933:5502..9119 | TCONS_00056251-exon-scaffold_27-1510915933:5502..9119 | Clytia hemisphaerica | exon |
| TCONS_00056251-exon-scaffold_27-1491911889:10167..10259 | TCONS_00056251-exon-scaffold_27-1491911889:10167..10259 | Clytia hemisphaerica | exon |
| TCONS_00056251-exon-scaffold_27-1491911889:5502..9119 | TCONS_00056251-exon-scaffold_27-1491911889:5502..9119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:5502..10259 - |
Blast
The following BLAST results are available for this feature:
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