Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056262 ID=TCONS_00056262|Name=TCONS_00056262|organism=Clytia hemisphaerica|type=transcript|length=4700bp gtttgaacCTTATATGGAGAAACCATTGtaattaaaatttcgaaaattcc taTAAAAACCGacgattttttctaaaaaatcaagTATCTAAACAAATCAA GACTCGGATTCAACACAAAAACGCTGTCTAAACGATCGCGAACCACGGCT CACGTGCATCATAGAATTCATCAAtttaaagaagaagaagaaaataaagg aaCCATTGAAAATTCCCATTCTGAAATGGACGAACAAGAATTGGACCAAA TTGAAGAAGAGGAATTAATTCCAGTTTCTAAACCATAACCTAANCCATTG AAAATTCCCATTCTGAAATGGACGAACAAGAATTGGACCAAATTGAAGAA GAGGAATTAATTCCAGTTTCTAAACCATAACCTAAGAAAAAGAAGATCGA AAAGCTACGTGTTCCCAGCCTTCGAGCATCTCTACAGTAAAGCAACAAAT CCAATTGGAAGAGGATAATGGATACGCGCAAAGAAATATGTTGAATGCCA GAGCAAGTAAGGGTAGTAAAAGTTTAGTTGTGTCAAGAGAAACTTCTGCT TTTGATGTCGACGCAATCAGTCCTATTGACTTTCGTGACGCCCCTGGACA agttattttgaagaaaaacgcTTTCCAACTCAAGCTTAAGGCCGTTTGTG TGGGTGCAAATCGGGTTAACTTCTCAAAAGATAAGGACCCCAAATGTCAG GAGGAGATTGTCTTGGATATAAAGATGATCTCGTCCGCAGGTCTAACGAT GAAAATGGTGTGCCTGATGaaattgatttcaaagataTAGAATTCAGAAT TTATTTACCAAAAAGATTTCAAGACCAATTTGATCTCTCATTTCTCATTG GAGCTCTGGTTCTTGTACCTGTTCAATGAATTGAAATGgataaatgaaaa taacaaaGACAAGTCCAGTATTTCTTTAATGCTTTTTCTTAACAATCGAC CGTGTTGTGAAAAAATTGGTATGTCAAAGGAGGACTACACCCTTCAATTG AAGAATTTGAAGCTGAGGCTGAGAAAAATAGTTTAAACGATTATGTTCCA ACTGGGGTTTTTTTGCCAGCTGTCTTTCTTACATGGAAGACTTTGCAAAA AAGTTTTACAAACGTGAAACACATATAACCGATAGAATTCACGgacaaaa atataataaatcATTTTAACATTATTGCATAGCATCGTGTTGTTTTTGTA TGCAATTAAAACATTACTTATTTTATGGTTTTACAGATTTTGTTTATTAA TGGATGTAATttaatgtttgttttttgtttttttattctcttttaattga ttttttcagAGCAAAGAGTCGATTCGCTTGCCAAGGCCTTCAATCTTGCA AAGAATTCGATCAAACTCAATCAACAATGTGCCTCGATGCTATGAATATC GTTGAAAAGATTAAACTCGATAGAGAAATTCTAGAACAgttgattttttc gaatttttttatcttcgataaTAGTGTTTATGATGACAACGCAAATATGC TCATACCGCTCAGTTCGTAATTGTCTTATACACGAAATgatatttttaca ttttggGAAAGCCGAAGAAACTATCATAATCTAAGATTAGACAAGGCAGA AAACGAATGCAATTTTTATTTGATACTTTTGGTGGAAGATTATCATTGGA AAAATGACTATTCTATAATTCCTTTGGATGAGCAGTTCGAAATGATTTTG GATAGTTTGCGATACCGTTCAGATCTTTATTATAACTACACTGGTTTCTC AAATGATCGTTATTTTGAATGCGAGCCCTCAATATTTAATACTTTGTTTT ATTCGAGTTTGGTTCCAGTTCATGATAATCATTGTTTGGTTGTTAcagat aattttttattgagtgTTATGAATGAAAGGAATTTGGGGGGGGGGATATA ATAGAGCCAATCGAATTTTAAAATATATGTATGGTATTGATAATTGCTAC AATGTAATCTCAAAATCTCAAATTTATGATTTTGTTTCTTTAACAAACAC TAAGGAAACTCTTATAGGTTTACAATTAAACCAGAAATATCTTTGTATTT TGCAGATTAATAATAAGCATTTTCAACTATTATATTCATTTGATTTTATA AATAATAGAAGACATTGCTTCACTCTTCAAGTGAGCAAATCTTTGTATAT AGAAGATTATTTGAATTTATTTCAGAATGACGTGGGCAATGATGAGAAAT TGTTATGTGAAAGTGGCTTAGAAATTTTATGTATTGATAAATATTCTTCG GCTAACAAAGGGCGTAGAGTTTTGTCGTTACTTTCAAGTTGTTATTTACG ATTATTGAACTTGATAGCTTTTCTAATTACTTTTTTTGTGGCGAAAGTTT AGTTTCAGAAATTTTTGAGGAGTTGAGTGTTTATGTTTATACGCGGTTTT TTATGTAGCCAGTAAAGTTGGAAATGATTTTGATGCAGCGTACACTATTT TGTTTACCTGCATCGTGCTTTCAGATAAGGGTTTTTGTTTTAAAAAAGTG TCTTGAATGTGGTGCAGAGTTTTCTTGGCATTTTTTCTCACTAAGAGCGG CAAGTCTTATGTGAAACAAGTTACACAATGTAGAGCGAAATTACATGTAA ATAAATACATACCTGACTACGATGGAGAGGAATTAATGTTTGGTAAGTAT ATAGATAATTTTAATGTTGTAATACTAATTTTTTTATTTTTAAGACGTGT ATCACCACCATGCATTCACCACTTCAACGATTATGAAAGTAATATTTGCA AACCTTTATTTAACGTTGGTATTTTTGTTGTAGGTAAATTTACATTAATC TAGGTTTAGTTTTTTTATATGTTTGTAAATTGTAAAACAATTTGTTTGGA GAAAAAGAAAATATTACATTTGCGTCTGGCTTTGTGTATATAAAAAAACC CTTCTCACGTTTTAGTACTTTGATCATTTTTTTTTATTAATCATGCATGT TTATTTATATTTTTCAGATATCAAAAGAAAAAAAGACATTAGAAATAGAA AATAAAAAAAAGGGAAAAAAGGTGAAGAGATACAACAACGATCGATTGTT TTGGTTTGATTGTTTCTGATTTTTCTTTTTAAGAAATGGCAAAAGAAGTA AAGTGTGTACTTCAGCGAGACTTTCAAAAGTCGAGAAACATTAAAAAAGT ATTTCATTGAGGAACACCGTATTCCAAGAAACAACCAGTCACTTGCAGCG AGACATTCAAAAAGTATTTCATTGAGGAACATCGTATTCCAAGAAACAAC TAGTCACTTGGCTGGTATGTCAAGTTATAGTGGAAGAGAGGTTGATGCTA AAAGTTTTGAGACCATGTTGAGGCTTTTGAAGGTCTTAAAACAAAAAGCA ACTAAATACACTTTACAAAGAGAAAAGGTGAAACTTGACTCGAACAAAAT ACGACACATGTTTGAAGCTTACGAGAATTTCGATGCGGCTGACAGTGTAG ATTCTGAAACTACTATTGAGAGTGAAAGAATCAACAGATCCTCTGCTGTG GCTTGGATTCTTTACTACTTTAATGCGTTTATAAATAACGATGTAAAAAC TTTGAGTGAAAAAGAGACCAATAACATTGTCACATTCTATTCTCAAGAGG AACGACATTATGCAAAATGCACTCGAGTCAAAATTGAACAGGAAGATAAT AAAGAACTTGATTTTAACggtaaaatgaaaatctatgTTGGCATCGCTTC ACCCTTGGAAGTCTTTATGAACTTGTCAAAAGTTTTATTTAAGacgtttt tttctggaatttcaAAATCCCAAAACAGTTTTCCAATATTCTTTGAAATA AATAACTGCAGAATTTTCTAAAAGCGAAGACACAATGGACAACTTTGCTT ATGGAGACGGTTATAGTACTAACTACGAATGAATATTTTGAAGATTGTGC GCAACGTAAAACTACCAGATAATATTCTGTACTTGTTTCTGGTCCTGTGG CTAATATTAAACGTCTCTTTAGTGACGGCCTATTACGATATACGATATTA ATTCGTTTGGATCTATTTCCAGACATTTCAAGGGAAGAATCGACTCAAGC GAAAACAAAACAGAATACATAACAGAACATGAATTTAAgatagacaaaaa aaaattcaaaatcctaTTCAAGTTGTGCTATGAACAAATTCAAATAAATC ACGAAAACAAGTCCAAGACTCGACAACGTATTCAAAAGATGTTGAAAGGA CATATTGCGTCAAActccaaaaaaatcaatttagaatCTTATCCAAATTT GAACAACGACGATTTAATTACCATAAGAACATTTTCCAAACAAGTAATCA CCATAATGAATTCAATGACAAAACAGAtcaaagaacatcaaaaatcatAC AACCGAAAGccttcaaaaaaaagaaatactaACTTTATCTTCTGAAGAAG ACGAAACTGATTTTGATTGTAACGAAGTGTCATCTTCAACACATCCAGCA CCATCAGTTACAGCAGCTAGAAAGTCACTTTtaacaaattccaaaaatgt tGGACCAGTGAAAAGAAAATGTGGGATAAAGAATAGAATGAAAATAATGC TACATCaacaaagaaagcaaaaaaagtcGTCAAAGAGCCAGCTTAAACAC CAATCAAATTTTCTGGAgaataaattcaaaaagttatttttaagaaacat aACTTAAAGAAAGCATCCAAAGCAGAAACCAAATAAAAGAGAGTGAAGAG Run BLAST on NCBI protein sequence of TCONS_00056262-protein >TCONS_00056262-protein ID=TCONS_00056262-protein|Name=TCONS_00056262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MSSYSGREVDAKSFETMLRLLKVLKQKATKYTLQREKVKLDSNKIRHMFE AYENFDAADSVDSETTIESERINRSSAVAWILYYFNAFINNDVKTLSEKE TNNIVTFYSQEERHYAKCTRVKIEQEDNKELDFNGKMKIYVGIASPLEVF MNLSKVLFKTFFSGISKSQNSFPIFFEINNCRIF Run BLAST on NCBI transcript from alignment at scaffold_27:13673..18372 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056262 ID=TCONS_00056262|Name=TCONS_00056262|organism=Clytia hemisphaerica|type=transcript|length=4700bp|location=Sequence derived from alignment at scaffold_27:13673..18372 (Clytia hemisphaerica) CTCTTCACTCTCTTTTATTTGGTTTCTGCTTTGGATGCTTTCTTTAAGTt
atgtttcttaaaaataactttttgaatttattcTCCAGAAAATTTGATTG
GTGTTTAAGCTGGCTCTTTGACgactttttttgctttctttgttGATGTA
GCATTATTTTCATTCTATTCTTTATCCCACATTTTCTTTTCACTGGTCCa
acatttttggaatttgttaAAAGTGACTTTCTAGCTGCTGTAACTGATGG
TGCTGGATGTGTTGAAGATGACACTTCGTTACAATCAAAATCAGTTTCGT
CTTCTTCAGAAGATAAAGTtagtatttcttttttttgaaggCTTTCGGTT
GTatgatttttgatgttctttgaTCTGTTTTGTCATTGAATTCATTATGG
TGATTACTTGTTTGGAAAATGTTCTTATGGTAATTAAATCGTCGTTGTTC
AAATTTGGATAAGattctaaattgatttttttggagTTTGACGCAATATG
TCCTTTCAACATCTTTTGAATACGTTGTCGAGTCTTGGACTTGTTTTCGT
GATTTATTTGAATTTGTTCATAGCACAACTTGAAtaggattttgaatttt
tttttgtctatcTTAAATTCATGTTCTGTTATGTATTCTGTTTTGTTTTC
GCTTGAGTCGATTCTTCCCTTGAAATGTCTGGAAATAGATCCAAACGAAT
TAATATCGTATATCGTAATAGGCCGTCACTAAAGAGACGTTTAATATTAG
CCACAGGACCAGAAACAAGTACAGAATATTATCTGGTAGTTTTACGTTGC
GCACAATCTTCAAAATATTCATTCGTAGTTAGTACTATAACCGTCTCCAT
AAGCAAAGTTGTCCATTGTGTCTTCGCTTTTAGAAAATTCTGCAGTTATT
TATTTCAAAGAATATTGGAAAACTGTTTTGGGATTTtgaaattccagaaa
aaaacgtCTTAAATAAAACTTTTGACAAGTTCATAAAGACTTCCAAGGGT
GAAGCGATGCCAAcatagattttcattttaccGTTAAAATCAAGTTCTTT
ATTATCTTCCTGTTCAATTTTGACTCGAGTGCATTTTGCATAATGTCGTT
CCTCTTGAGAATAGAATGTGACAATGTTATTGGTCTCTTTTTCACTCAAA
GTTTTTACATCGTTATTTATAAACGCATTAAAGTAGTAAAGAATCCAAGC
CACAGCAGAGGATCTGTTGATTCTTTCACTCTCAATAGTAGTTTCAGAAT
CTACACTGTCAGCCGCATCGAAATTCTCGTAAGCTTCAAACATGTGTCGT
ATTTTGTTCGAGTCAAGTTTCACCTTTTCTCTTTGTAAAGTGTATTTAGT
TGCTTTTTGTTTTAAGACCTTCAAAAGCCTCAACATGGTCTCAAAACTTT
TAGCATCAACCTCTCTTCCACTATAACTTGACATACCAGCCAAGTGACTA
GTTGTTTCTTGGAATACGATGTTCCTCAATGAAATACTTTTTGAATGTCT
CGCTGCAAGTGACTGGTTGTTTCTTGGAATACGGTGTTCCTCAATGAAAT
ACTTTTTTAATGTTTCTCGACTTTTGAAAGTCTCGCTGAAGTACACACTT
TACTTCTTTTGCCATTTCTTAAAAAGAAAAATCAGAAACAATCAAACCAA
AACAATCGATCGTTGTTGTATCTCTTCACCTTTTTTCCCTTTTTTTTATT
TTCTATTTCTAATGTCTTTTTTTCTTTTGATATCTGAAAAATATAAATAA
ACATGCATGATTAATAAAAAAAAATGATCAAAGTACTAAAACGTGAGAAG
GGTTTTTTTATATACACAAAGCCAGACGCAAATGTAATATTTTCTTTTTC
TCCAAACAAATTGTTTTACAATTTACAAACATATAAAAAAACTAAACCTA
GATTAATGTAAATTTACCTACAACAAAAATACCAACGTTAAATAAAGGTT
TGCAAATATTACTTTCATAATCGTTGAAGTGGTGAATGCATGGTGGTGAT
ACACGTCTTAAAAATAAAAAAATTAGTATTACAACATTAAAATTATCTAT
ATACTTACCAAACATTAATTCCTCTCCATCGTAGTCAGGTATGTATTTAT
TTACATGTAATTTCGCTCTACATTGTGTAACTTGTTTCACATAAGACTTG
CCGCTCTTAGTGAGAAAAAATGCCAAGAAAACTCTGCACCACATTCAAGA
CACTTTTTTAAAACAAAAACCCTTATCTGAAAGCACGATGCAGGTAAACA
AAATAGTGTACGCTGCATCAAAATCATTTCCAACTTTACTGGCTACATAA
AAAACCGCGTATAAACATAAACACTCAACTCCTCAAAAATTTCTGAAACT
AAACTTTCGCCACAAAAAAAGTAATTAGAAAAGCTATCAAGTTCAATAAT
CGTAAATAACAACTTGAAAGTAACGACAAAACTCTACGCCCTTTGTTAGC
CGAAGAATATTTATCAATACATAAAATTTCTAAGCCACTTTCACATAACA
ATTTCTCATCATTGCCCACGTCATTCTGAAATAAATTCAAATAATCTTCT
ATATACAAAGATTTGCTCACTTGAAGAGTGAAGCAATGTCTTCTATTATT
TATAAAATCAAATGAATATAATAGTTGAAAATGCTTATTATTAATCTGCA
AAATACAAAGATATTTCTGGTTTAATTGTAAACCTATAAGAGTTTCCTTA
GTGTTTGTTAAAGAAACAAAATCATAAATTTGAGATTTTGAGATTACATT
GTAGCAATTATCAATACCATACATATATTTTAAAATTCGATTGGCTCTAT
TATATCCCCCCCCCCAAATTCCTTTCATTCATAAcactcaataaaaaatt
atctgTAACAACCAAACAATGATTATCATGAACTGGAACCAAACTCGAAT
AAAACAAAGTATTAAATATTGAGGGCTCGCATTCAAAATAACGATCATTT
GAGAAACCAGTGTAGTTATAATAAAGATCTGAACGGTATCGCAAACTATC
CAAAATCATTTCGAACTGCTCATCCAAAGGAATTATAGAATAGTCATTTT
TCCAATGATAATCTTCCACCAAAAGTATCAAATAAAAATTGCATTCGTTT
TCTGCCTTGTCTAATCTTAGATTATGATAGTTTCTTCGGCTTTCccaaaa
tgtaaaaatatcATTTCGTGTATAAGACAATTACGAACTGAGCGGTATGA
GCATATTTGCGTTGTCATCATAAACACTAttatcgaagataaaaaaattc
gaaaaaatcaacTGTTCTAGAATTTCTCTATCGAGTTTAATCTTTTCAAC
GATATTCATAGCATCGAGGCACATTGTTGATTGAGTTTGATCGAATTCTT
TGCAAGATTGAAGGCCTTGGCAAGCGAATCGACTCTTTGCTctgaaaaaa
tcaattaaaagagaataaaaaaacaaaaaacaaacattaaATTACATCCA
TTAATAAACAAAATCTGTAAAACCATAAAATAAGTAATGTTTTAATTGCA
TACAAAAACAACACGATGCTATGCAATAATGTTAAAATgatttattatat
ttttgtcCGTGAATTCTATCGGTTATATGTGTTTCACGTTTGTAAAACTT
TTTTGCAAAGTCTTCCATGTAAGAAAGACAGCTGGCAAAAAAACCCCAGT
TGGAACATAATCGTTTAAACTATTTTTCTCAGCCTCAGCTTCAAATTCTT
CAATTGAAGGGTGTAGTCCTCCTTTGACATACCAATTTTTTCACAACACG
GTCGATTGTTAAGAAAAAGCATTAAAGAAATACTGGACTTGTCtttgtta
ttttcatttatcCATTTCAATTCATTGAACAGGTACAAGAACCAGAGCTC
CAATGAGAAATGAGAGATCAAATTGGTCTTGAAATCTTTTTGGTAAATAA
ATTCTGAATTCTAtatctttgaaatcaatttCATCAGGCACACCATTTTC
ATCGTTAGACCTGCGGACGAGATCATCTTTATATCCAAGACAATCTCCTC
CTGACATTTGGGGTCCTTATCTTTTGAGAAGTTAACCCGATTTGCACCCA
CACAAACGGCCTTAAGCTTGAGTTGGAAAgcgtttttcttcaaaataact
TGTCCAGGGGCGTCACGAAAGTCAATAGGACTGATTGCGTCGACATCAAA
AGCAGAAGTTTCTCTTGACACAACTAAACTTTTACTACCCTTACTTGCTC
TGGCATTCAACATATTTCTTTGCGCGTATCCATTATCCTCTTCCAATTGG
ATTTGTTGCTTTACTGTAGAGATGCTCGAAGGCTGGGAACACGTAGCTTT
TCGATCTTCTTTTTCTTAGGTTATGGTTTAGAAACTGGAATTAATTCCTC
TTCTTCAATTTGGTCCAATTCTTGTTCGTCCATTTCAGAATGGGAATTTT
CAATGGNTTAGGTTATGGTTTAGAAACTGGAATTAATTCCTCTTCTTCAA
TTTGGTCCAATTCTTGTTCGTCCATTTCAGAATGGGAATTTTCAATGGtt
cctttattttcttcttcttctttaaaTTGATGAATTCTATGATGCACGTG
AGCCGTGGTTCGCGATCGTTTAGACAGCGTTTTTGTGTTGAATCCGAGTC
TTGATTTGTTTAGATActtgattttttagaaaaaatcgtCGGTTTTTAta
ggaattttcgaaattttaattaCAATGGTTTCTCCATATAAGgttcaaac
Coding sequence (CDS) from alignment at scaffold_27:13673..18372 >TCONS_00056262 ID=TCONS_00056262|Name=TCONS_00056262|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_27:13673..18372 (Clytia hemisphaerica) TTAGAAAATTCTGCAGTTATTTATTTCAAAGAATATTGGAAAACTGTTTT GGGATTTtgaaattccagaaaaaaacgtCTTAAATAAAACTTTTGACAAG TTCATAAAGACTTCCAAGGGTGAAGCGATGCCAAcatagattttcatttt accGTTAAAATCAAGTTCTTTATTATCTTCCTGTTCAATTTTGACTCGAG TGCATTTTGCATAATGTCGTTCCTCTTGAGAATAGAATGTGACAATGTTA TTGGTCTCTTTTTCACTCAAAGTTTTTACATCGTTATTTATAAACGCATT AAAGTAGTAAAGAATCCAAGCCACAGCAGAGGATCTGTTGATTCTTTCAC TCTCAATAGTAGTTTCAGAATCTACACTGTCAGCCGCATCGAAATTCTCG TAAGCTTCAAACATGTGTCGTATTTTGTTCGAGTCAAGTTTCACCTTTTC TCTTTGTAAAGTGTATTTAGTTGCTTTTTGTTTTAAGACCTTCAAAAGCC TCAACATGGTCTCAAAACTTTTAGCATCAACCTCTCTTCCACTATAACTT GACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056262-exon-scaffold_27-1491911889:13673..18372 | TCONS_00056262-exon-scaffold_27-1491911889:13673..18372 | Clytia hemisphaerica | exon |
TCONS_00056262-exon-scaffold_27-1510915933:13673..18372 | TCONS_00056262-exon-scaffold_27-1510915933:13673..18372 | Clytia hemisphaerica | exon |
TCONS_00056262-exon-scaffold_27-1575043694:13673..18372 | TCONS_00056262-exon-scaffold_27-1575043694:13673..18372 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_27 | supercontig | scaffold_27:13673..18372 . |
Blast
The following BLAST results are available for this feature:
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