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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056267 ID=TCONS_00056267|Name=TCONS_00056267|organism=Clytia hemisphaerica|type=transcript|length=3021bp
GCTCGTTAACAGATACGTCATTGAGAAAACTACTTCTGGTGGAGAAAACT
AATTTACTTATAATTGATTGAAacgaaacaaaattttttaaatagaaaCT
AATTAACCGCCAAGATTCAAGCGAATAACAGCCTTAAGTGCAGTTGTAGG
ACCGCTACGCGCAACTGTCCGGCCCCTGGGCGCTGTCTTGTTCATTCATT
TGAGACCcaggaaaattttaataaagtCGCCAAAACTAGACATTCATCTT
CCGTACTAATGTCGTTGGAGGAAGAGCCTGCATCCGACGAGATGCTTCGT
CGAATCACGATGCAGCTGGTAGACAATAGTTCTCGCCAAGACAGGGCCTT
ACAAGATTTGATGAAAACTATTGCGGGTGTCGTATTAGGTTAGGTTTTGA
CCTCATCAacaatatttttagcttttccTCCTCCACAACAGGAAATTAAA
TTCACTTTGACGAGATTCTACGCGATTTCCAAATTTTCCTAGACTCGAAG
TCAATATCAAGTATTTTTATGTAGATAGCATCAAAATCTCTCTTCTAATT
GACATGAAGTTTTGATTaacgaaatttcgaaaaattttctaatttgctaa
ctaattaattttgaaataactGATGACGAAGGCAGGATATATGTGAGAGA
TATAATCCTAACTAATTAACCTTGAAATAACCAGTGACGTAGATAGAACG
TATATGTGAGAGATATCTTCTGAGAGATACTACTATAATTATCGTACGAT
CGATTGCTCAAGCACTGAGGGGAGTCCTTGAGTAATTTAAAAGAATTGTa
atgaaatttataaatattgGATACCTAGGGACGGGTCTACCCCTAGAACC
CCAGGGAGGAGTGATGCCCCTGGAAGCCCTTTCACCCCTCACTTAAAGGA
AAGGATGGTCCCATTACGGCCCAGAACTCACATTCTGAGGTTAGGATGGA
AGCCCTCGACGGTTGGAGTTGTGGTCCTCCATACCTTGTTAAAAATATAG
GTACCCAATGTGTCTTTAGCATAGAGGATGTATTTTGAGGAAAGACATGC
AGACAATAAAAGAGAAACGCTATAGCAGATAAATTAAAcggttttattta
ttttagattcaCGGATATCACACACTAATGTCAAGTTACGAAGAACTGGA
AGTGGCTCAAAGGAATGCGTTGAGCGCAATCCAGACACACTTAGGACAAG
GATTGGATCCATTAACCGAAGAATATCGTGGAATAAATAACCGACCACAC
TTAAAAGAAGAATCCAATCCCAAGAACGCAGAACACTCTGCTATCATAAA
ACTAGTACAAACTCTAGAAGTGGATATAGAAACATTGTCCATTGAGAAGA
GACAGTACGTCAATACCCTGAAAGACGTTAACGAACAGCTTGAACAATAC
GTCAGGCGTGGTAGGGATACACAAGAAGAGACAGACGAAATCCCTACGCT
CCAAGCAATAGAGTCCCTTAAAAGAAGGGGAATTGAACAAGGTAAAGCAA
TATCTGAGGAGTCCAAAAGAATATATATTGGGCTAAAAGAAGTAGAAGAG
GAGCTCTCGTCAGGAGACTACTTACATTCCATAGAGTTGAGAggagaaat
tgaaaaacttcTAGAAACTCTCCAGAAATCTGAATGCATCCTTGGCCAGT
TTGTATATAAGATTTCTAAAACCCGAGACAACCTCGAAGAAAGGATCTTA
TTAGAATCCTCAGACCCAGTCACACACATGGGAGgactgtttttttctaa
aacgcCTCTTCCAGTTGATTGTTCTACCCCACTATTCCGTAGAACACGGT
TAGAATCAAAAGGGAAAGAAGATCAAAAAGCCCAAGTTGAGGAACCGAAG
AGAATGGATTCAGTCCTAGATTCGGTTTCTGTTGCTGCCTTGTTGGCAAA
CAAGGTAGACATCTCATCACTCCCCAAATTTGGAGAGAATCCGAGTGATG
ATGTAGTCGAATTCATTACCAAACTTGATATATCGTTGTCATTTTATCAA
TTAGACGACAAACAAAAAGCAAGGGTCGTTCCTTTACTTCTAATGAAAAG
GGCGTACACCTTTTATTTTACTCTACCGTCCATAGTGAAGGACAATTACA
AAGAGCTAACAAAATCCCTTCGTAAAGAGTTTGATGCTCCTGAACTGAAG
TACAGGAAAAGACAGGAACTCCACGGGATCAAACAAAACGGGGATACCAT
AACGAGGTACCTGGAGAGAGTAGAGAGGCTCTCACAAAATTTACAGGTCG
CCGACCAAACGAAACTGGATATAATGATTGCAGGTTTGGACATCCCATAT
AGGAACTATATCCAAATGAAACAGCCAAGAACATACAGTGATGCCACACA
CGCATTACTATTAAAAGAGTCAGTTAATCCACCAATAGACGATACAGCCA
CGATGAACAGCATCCTCGCAGCAGTGGAAGCCATGAGGCCTAGTGCAAAC
AATAGGAACAGTGAAAGACCACCGATGGTATGTTACTATTGCAACCGACG
AGGAAATATGATGAGAGAATGTCAATTGAGGAAGAGGGACCAAAGCAGAA
ACAATAGGCCTCCAACGAAAGGCCCAAGTCAAGAAAAGTGTACACAGTGC
TATCGCTGGGGACACATTGCTAAAGAGTGTAGAAATCGAAAAAAGGTAGT
GGATTAGGCCACGCCCAGATGAGTGAGGAAGAGACCATTTTTCTAAAAGT
CGACAAAGTTTCTTGCAATGAAAAATCACGGAAACTACGGTCAGTCTTCT
GGGTAACGCTATATCAGAAACCAATACAAACTCTGGTAGACACTGGTGCA
ACAGTCACAGCGATTTtggctggaacactagaacaaaTCAGTAGAAACAC
CAGACGTCCCGCCTACCCGTGTTGAAGTAGCTAATGGTTATATGGAAGAG
GCAATAGAGGTCTTGAACCTTCCCATTACTATTGGTGGCTCAACATTCTT
TCATCCGACACACGTATTCGAGAATCTTCCATTTCCACTCTTATTGGGTG
ATGACCTCCTCGAGGTTAAAG Run BLAST on NCBI protein sequence of TCONS_00056267-protein >TCONS_00056267-protein ID=TCONS_00056267-protein|Name=TCONS_00056267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MSSYEELEVAQRNALSAIQTHLGQGLDPLTEEYRGINNRPHLKEESNPKN
AEHSAIIKLVQTLEVDIETLSIEKRQYVNTLKDVNEQLEQYVRRGRDTQE
ETDEIPTLQAIESLKRRGIEQGKAISEESKRIYIGLKEVEEELSSGDYLH
SIELRGEIEKLLETLQKSECILGQFVYKISKTRDNLEERILLESSDPVTH
MGGLFFSKTPLPVDCSTPLFRRTRLESKGKEDQKAQVEEPKRMDSVLDSV
SVAALLANKVDISSLPKFGENPSDDVVEFITKLDISLSFYQLDDKQKARV
VPLLLMKRAYTFYFTLPSIVKDNYKELTKSLRKEFDAPELKYRKRQELHG
IKQNGDTITRYLERVERLSQNLQVADQTKLDIMIAGLDIPYRNYIQMKQP
RTYSDATHALLLKESVNPPIDDTATMNSILAAVEAMRPSANNRNSERPPM
VCYYCNRRGNMMRECQLRKRDQSRNNRPPTKGPSQEKCTQCYRWGHIAKE
CRNRKKVVD Run BLAST on NCBI transcript from alignment at scaffold_27:41369..44389 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056267 ID=TCONS_00056267|Name=TCONS_00056267|organism=Clytia hemisphaerica|type=transcript|length=3021bp|location=Sequence derived from alignment at scaffold_27:41369..44389 (Clytia hemisphaerica)
CTTTAACCTCGAGGAGGTCATCACCCAATAAGAGTGGAAATGGAAGATTC
TCGAATACGTGTGTCGGATGAAAGAATGTTGAGCCACCAATAGTAATGGG
AAGGTTCAAGACCTCTATTGCCTCTTCCATATAACCATTAGCTACTTCAA
CACGGGTAGGCGGGACGTCTGGTGTTTCTACTGAtttgttctagtgttcc
agccaAAATCGCTGTGACTGTTGCACCAGTGTCTACCAGAGTTTGTATTG
GTTTCTGATATAGCGTTACCCAGAAGACTGACCGTAGTTTCCGTGATTTT
TCATTGCAAGAAACTTTGTCGACTTTTAGAAAAATGGTCTCTTCCTCACT
CATCTGGGCGTGGCCTAATCCACTACCTTTTTTCGATTTCTACACTCTTT
AGCAATGTGTCCCCAGCGATAGCACTGTGTACACTTTTCTTGACTTGGGC
CTTTCGTTGGAGGCCTATTGTTTCTGCTTTGGTCCCTCTTCCTCAATTGA
CATTCTCTCATCATATTTCCTCGTCGGTTGCAATAGTAACATACCATCGG
TGGTCTTTCACTGTTCCTATTGTTTGCACTAGGCCTCATGGCTTCCACTG
CTGCGAGGATGCTGTTCATCGTGGCTGTATCGTCTATTGGTGGATTAACT
GACTCTTTTAATAGTAATGCGTGTGTGGCATCACTGTATGTTCTTGGCTG
TTTCATTTGGATATAGTTCCTATATGGGATGTCCAAACCTGCAATCATTA
TATCCAGTTTCGTTTGGTCGGCGACCTGTAAATTTTGTGAGAGCCTCTCT
ACTCTCTCCAGGTACCTCGTTATGGTATCCCCGTTTTGTTTGATCCCGTG
GAGTTCCTGTCTTTTCCTGTACTTCAGTTCAGGAGCATCAAACTCTTTAC
GAAGGGATTTTGTTAGCTCTTTGTAATTGTCCTTCACTATGGACGGTAGA
GTAAAATAAAAGGTGTACGCCCTTTTCATTAGAAGTAAAGGAACGACCCT
TGCTTTTTGTTTGTCGTCTAATTGATAAAATGACAACGATATATCAAGTT
TGGTAATGAATTCGACTACATCATCACTCGGATTCTCTCCAAATTTGGGG
AGTGATGAGATGTCTACCTTGTTTGCCAACAAGGCAGCAACAGAAACCGA
ATCTAGGACTGAATCCATTCTCTTCGGTTCCTCAACTTGGGCTTTTTGAT
CTTCTTTCCCTTTTGATTCTAACCGTGTTCTACGGAATAGTGGGGTAGAA
CAATCAACTGGAAGAGgcgttttagaaaaaaacagtcCTCCCATGTGTGT
GACTGGGTCTGAGGATTCTAATAAGATCCTTTCTTCGAGGTTGTCTCGGG
TTTTAGAAATCTTATATACAAACTGGCCAAGGATGCATTCAGATTTCTGG
AGAGTTTCTAgaagtttttcaatttctccTCTCAACTCTATGGAATGTAA
GTAGTCTCCTGACGAGAGCTCCTCTTCTACTTCTTTTAGCCCAATATATA
TTCTTTTGGACTCCTCAGATATTGCTTTACCTTGTTCAATTCCCCTTCTT
TTAAGGGACTCTATTGCTTGGAGCGTAGGGATTTCGTCTGTCTCTTCTTG
TGTATCCCTACCACGCCTGACGTATTGTTCAAGCTGTTCGTTAACGTCTT
TCAGGGTATTGACGTACTGTCTCTTCTCAATGGACAATGTTTCTATATCC
ACTTCTAGAGTTTGTACTAGTTTTATGATAGCAGAGTGTTCTGCGTTCTT
GGGATTGGATTCTTCTTTTAAGTGTGGTCGGTTATTTATTCCACGATATT
CTTCGGTTAATGGATCCAATCCTTGTCCTAAGTGTGTCTGGATTGCGCTC
AACGCATTCCTTTGAGCCACTTCCAGTTCTTCGTAACTTGACATTAGTGT
GTGATATCCGtgaatctaaaataaataaaaccgTTTAATTTATCTGCTAT
AGCGTTTCTCTTTTATTGTCTGCATGTCTTTCCTCAAAATACATCCTCTA
TGCTAAAGACACATTGGGTACCTATATTTTTAACAAGGTATGGAGGACCA
CAACTCCAACCGTCGAGGGCTTCCATCCTAACCTCAGAATGTGAGTTCTG
GGCCGTAATGGGACCATCCTTTCCTTTAAGTGAGGGGTGAAAGGGCTTCC
AGGGGCATCACTCCTCCCTGGGGTTCTAGGGGTAGACCCGTCCCTAGGTA
TCcaatatttataaatttcattACAATTCTTTTAAATTACTCAAGGACTC
CCCTCAGTGCTTGAGCAATCGATCGTACGATAATTATAGTAGTATCTCTC
AGAAGATATCTCTCACATATACGTTCTATCTACGTCACTGGTTATTTCAA
GGTTAATTAGTTAGGATTATATCTCTCACATATATCCTGCCTTCGTCATC
agttatttcaaaattaattagttagcaaattagaaaatttttcgaaattt
cgttAATCAAAACTTCATGTCAATTAGAAGAGAGATTTTGATGCTATCTA
CATAAAAATACTTGATATTGACTTCGAGTCTAGGAAAATTTGGAAATCGC
GTAGAATCTCGTCAAAGTGAATTTAATTTCCTGTTGTGGAGGAggaaaag
ctaaaaatattgtTGATGAGGTCAAAACCTAACCTAATACGACACCCGCA
ATAGTTTTCATCAAATCTTGTAAGGCCCTGTCTTGGCGAGAACTATTGTC
TACCAGCTGCATCGTGATTCGACGAAGCATCTCGTCGGATGCAGGCTCTT
CCTCCAACGACATTAGTACGGAAGATGAATGTCTAGTTTTGGCGacttta
ttaaaattttcctgGGTCTCAAATGAATGAACAAGACAGCGCCCAGGGGC
CGGACAGTTGCGCGTAGCGGTCCTACAACTGCACTTAAGGCTGTTATTCG
CTTGAATCTTGGCGGTTAATTAGtttctatttaaaaaattttgtttcgtT
TCAATCAATTATAAGTAAATTAGTTTTCTCCACCAGAAGTAGTTTTCTCA
ATGACGTATCTGTTAACGAGC Coding sequence (CDS) from alignment at scaffold_27:41369..44389 >TCONS_00056267 ID=TCONS_00056267|Name=TCONS_00056267|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_27:41369..44389 (Clytia hemisphaerica)
CTAATCCACTACCTTTTTTCGATTTCTACACTCTTTAGCAATGTGTCCCC
AGCGATAGCACTGTGTACACTTTTCTTGACTTGGGCCTTTCGTTGGAGGC
CTATTGTTTCTGCTTTGGTCCCTCTTCCTCAATTGACATTCTCTCATCAT
ATTTCCTCGTCGGTTGCAATAGTAACATACCATCGGTGGTCTTTCACTGT
TCCTATTGTTTGCACTAGGCCTCATGGCTTCCACTGCTGCGAGGATGCTG
TTCATCGTGGCTGTATCGTCTATTGGTGGATTAACTGACTCTTTTAATAG
TAATGCGTGTGTGGCATCACTGTATGTTCTTGGCTGTTTCATTTGGATAT
AGTTCCTATATGGGATGTCCAAACCTGCAATCATTATATCCAGTTTCGTT
TGGTCGGCGACCTGTAAATTTTGTGAGAGCCTCTCTACTCTCTCCAGGTA
CCTCGTTATGGTATCCCCGTTTTGTTTGATCCCGTGGAGTTCCTGTCTTT
TCCTGTACTTCAGTTCAGGAGCATCAAACTCTTTACGAAGGGATTTTGTT
AGCTCTTTGTAATTGTCCTTCACTATGGACGGTAGAGTAAAATAAAAGGT
GTACGCCCTTTTCATTAGAAGTAAAGGAACGACCCTTGCTTTTTGTTTGT
CGTCTAATTGATAAAATGACAACGATATATCAAGTTTGGTAATGAATTCG
ACTACATCATCACTCGGATTCTCTCCAAATTTGGGGAGTGATGAGATGTC
TACCTTGTTTGCCAACAAGGCAGCAACAGAAACCGAATCTAGGACTGAAT
CCATTCTCTTCGGTTCCTCAACTTGGGCTTTTTGATCTTCTTTCCCTTTT
GATTCTAACCGTGTTCTACGGAATAGTGGGGTAGAACAATCAACTGGAAG
AGgcgttttagaaaaaaacagtcCTCCCATGTGTGTGACTGGGTCTGAGG
ATTCTAATAAGATCCTTTCTTCGAGGTTGTCTCGGGTTTTAGAAATCTTA
TATACAAACTGGCCAAGGATGCATTCAGATTTCTGGAGAGTTTCTAgaag
tttttcaatttctccTCTCAACTCTATGGAATGTAAGTAGTCTCCTGACG
AGAGCTCCTCTTCTACTTCTTTTAGCCCAATATATATTCTTTTGGACTCC
TCAGATATTGCTTTACCTTGTTCAATTCCCCTTCTTTTAAGGGACTCTAT
TGCTTGGAGCGTAGGGATTTCGTCTGTCTCTTCTTGTGTATCCCTACCAC
GCCTGACGTATTGTTCAAGCTGTTCGTTAACGTCTTTCAGGGTATTGACG
TACTGTCTCTTCTCAATGGACAATGTTTCTATATCCACTTCTAGAGTTTG
TACTAGTTTTATGATAGCAGAGTGTTCTGCGTTCTTGGGATTGGATTCTT
CTTTTAAGTGTGGTCGGTTATTTATTCCACGATATTCTTCGGTTAATGGA
TCCAATCCTTGTCCTAAGTGTGTCTGGATTGCGCTCAACGCATTCCTTTG
AGCCACTTCCAGTTCTTCGTAACTTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056267-exon-scaffold_27-1491911889:41369..44389 | TCONS_00056267-exon-scaffold_27-1491911889:41369..44389 | Clytia hemisphaerica | exon |
| TCONS_00056267-exon-scaffold_27-1510915933:41369..44389 | TCONS_00056267-exon-scaffold_27-1510915933:41369..44389 | Clytia hemisphaerica | exon |
| TCONS_00056267-exon-scaffold_27-1575043694:41369..44389 | TCONS_00056267-exon-scaffold_27-1575043694:41369..44389 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:41369..44389 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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