TCONS_00056278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056278
Unique NameTCONS_00056278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056278 ID=TCONS_00056278|Name=TCONS_00056278|organism=Clytia hemisphaerica|type=transcript|length=666bp
GAGGATCAGCAGGTTGTGTTTGTTTCTTTAGTTTCGCCGTTTTGATTTTA
ATCTCATTCAAAGGTGCCATAGGAATTGAACTTTTGGTGCTTCTTCTGTG
CCACCTTTGCAGTTGTTGTGTACAAGTTAATTCAATAATCTTTTCACCTG
TCTcgttaaaatgctttaaaaacaacaacaggGACAACACGTGACAGCAA
AGTCCACACGAGCCAACAGGACAATTACAATGCGCTTTAGACGGTGCATT
ATTCTTCAAATATAAAACTGCTGGCCAGGTTTCATATACATAGGATTTCT
TGATCATGGCTTTTACAAACAAATCACCTTCTTCAAGTCCTTGGATTGTC
CTTACTGAAACTATCTTCCTACTTTGAAACATTCTAACTGCCTTCATCTG
CTGCCCTTGACTTCCTTCTGATTTTTGCGAAGCATAAGATTTGAATTGTT
CACTGGTGATGTTTGGGTATGAATCATGATTACTGGACCACTTTGCAGTA
GAAGGAGGAATTTCCAAAGGATTCAAACTGGACGAAAACTTGTAATGTCT
CTTAGCTTTATTCTTCagcttttttacaagttttgggtAGCGAATAAAAC
GTTTGATTCGATTGATCAGCTCATCTTTGGAGCCTGTTGAAGAAAGACCA
ATGTCTTTTAACCACT
Run BLAST on NCBI

protein sequence of TCONS_00056278-protein

>TCONS_00056278-protein ID=TCONS_00056278-protein|Name=TCONS_00056278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
WLKDIGLSSTGSKDELINRIKRFIRYPKLVKKLKNKAKRHYKFSSSLNPL
EIPPSTAKWSSNHDSYPNITSEQFKSYASQKSEGSQGQQMKAVRMFQSRK
IVSVRTIQGLEEGDLFVKAMIKKSYVYETWPAVLYLKNNAPSKAHCNCPV
GSCGLCCHVLSLLLFLKHFNETGEKIIELTCTQQLQRWHRRSTKSSIPMA
PLNEIKIKTAKLKKQTQPADP
Run BLAST on NCBI

transcript from alignment at scaffold_27:107665..108330

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056278 ID=TCONS_00056278|Name=TCONS_00056278|organism=Clytia hemisphaerica|type=transcript|length=666bp|location=Sequence derived from alignment at scaffold_27:107665..108330 (Clytia hemisphaerica)
AGTGGTTAAAAGACATTGGTCTTTCTTCAACAGGCTCCAAAGATGAGCTG
ATCAATCGAATCAAACGTTTTATTCGCTacccaaaacttgtaaaaaagct
GAAGAATAAAGCTAAGAGACATTACAAGTTTTCGTCCAGTTTGAATCCTT
TGGAAATTCCTCCTTCTACTGCAAAGTGGTCCAGTAATCATGATTCATAC
CCAAACATCACCAGTGAACAATTCAAATCTTATGCTTCGCAAAAATCAGA
AGGAAGTCAAGGGCAGCAGATGAAGGCAGTTAGAATGTTTCAAAGTAGGA
AGATAGTTTCAGTAAGGACAATCCAAGGACTTGAAGAAGGTGATTTGTTT
GTAAAAGCCATGATCAAGAAATCCTATGTATATGAAACCTGGCCAGCAGT
TTTATATTTGAAGAATAATGCACCGTCTAAAGCGCATTGTAATTGTCCTG
TTGGCTCGTGTGGACTTTGCTGTCACGTGTTGTCcctgttgttgttttta
aagcattttaacgAGACAGGTGAAAAGATTATTGAATTAACTTGTACACA
ACAACTGCAAAGGTGGCACAGAAGAAGCACCAAAAGTTCAATTCCTATGG
CACCTTTGAATGAGATTAAAATCAAAACGGCGAAACTAAAGAAACAAACA
CAACCTGCTGATCCTC

Coding sequence (CDS) from alignment at scaffold_27:107665..108330

>TCONS_00056278 ID=TCONS_00056278|Name=TCONS_00056278|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_27:107665..108330 (Clytia hemisphaerica)
TGGTTAAAAGACATTGGTCTTTCTTCAACAGGCTCCAAAGATGAGCTGAT
CAATCGAATCAAACGTTTTATTCGCTacccaaaacttgtaaaaaagctGA
AGAATAAAGCTAAGAGACATTACAAGTTTTCGTCCAGTTTGAATCCTTTG
GAAATTCCTCCTTCTACTGCAAAGTGGTCCAGTAATCATGATTCATACCC
AAACATCACCAGTGAACAATTCAAATCTTATGCTTCGCAAAAATCAGAAG
GAAGTCAAGGGCAGCAGATGAAGGCAGTTAGAATGTTTCAAAGTAGGAAG
ATAGTTTCAGTAAGGACAATCCAAGGACTTGAAGAAGGTGATTTGTTTGT
AAAAGCCATGATCAAGAAATCCTATGTATATGAAACCTGGCCAGCAGTTT
TATATTTGAAGAATAATGCACCGTCTAAAGCGCATTGTAATTGTCCTGTT
GGCTCGTGTGGACTTTGCTGTCACGTGTTGTCcctgttgttgtttttaaa
gcattttaacgAGACAGGTGAAAAGATTATTGAATTAACTTGTACACAAC
AACTGCAAAGGTGGCACAGAAGAAGCACCAAAAGTTCAATTCCTATGGCA
CCTTTGAATGAGATTAAAATCAAAACGGCGAAACTAAAGAAACAAACACA
ACCTGCTGATCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035452XLOC_035452Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056278-proteinTCONS_00056278-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056278-exon-scaffold_27-1491911889:107665..108330TCONS_00056278-exon-scaffold_27-1491911889:107665..108330Clytia hemisphaericaexon
TCONS_00056278-exon-scaffold_27-1510915933:107665..108330TCONS_00056278-exon-scaffold_27-1510915933:107665..108330Clytia hemisphaericaexon
TCONS_00056278-exon-scaffold_27-1575043694:107665..108330TCONS_00056278-exon-scaffold_27-1575043694:107665..108330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:107665..108330 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.790962	0.716363	0.674611	0.697377	0.999048	0.690503	1.59514	0.886077	1.15815	0.499285	1.72105	0.570655	1.19019	1.83239	0.904833	0.954958	0.83141	0.612039	0.318638	1.31072	0	0.72118	0.460432	1.00161	1.51171	3.3744	0.706839	0.198945	0.586438	0.64031
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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