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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056295 ID=TCONS_00056295|Name=TCONS_00056295|organism=Clytia hemisphaerica|type=transcript|length=2280bpRun BLAST on NCBI protein sequence of TCONS_00056295-protein >TCONS_00056295-protein ID=TCONS_00056295-protein|Name=TCONS_00056295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp MVTVASTTPHVEVTAVKGDFYAKYEPGDILGDGISSVVRKCRNKENGEEFRun BLAST on NCBI transcript from alignment at scaffold_271:77892..82897- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056295 ID=TCONS_00056295|Name=TCONS_00056295|organism=Clytia hemisphaerica|type=transcript|length=5006bp|location=Sequence derived from alignment at scaffold_271:77892..82897- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_271:77892..82897- >TCONS_00056295 ID=TCONS_00056295|Name=TCONS_00056295|organism=Clytia hemisphaerica|type=CDS|length=16128bp|location=Sequence derived from alignment at scaffold_271:77892..82897- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056295 vs. Swiss-Prot (Human)
Match: PHKG2 (Phosphorylase b kinase gamma catalytic chain, liver/testis isoform OS=Homo sapiens GN=PHKG2 PE=1 SV=1) HSP 1 Score: 344.739 bits (883), Expect = 3.524e-110 Identity = 170/373 (45.58%), Postives = 242/373 (64.88%), Query Frame = 1
Query: 82 AVKGDFYAKYEPGDILGDGISSVVRKCRNKENGEEFAVKIIDKFSKKGQVVKGIDIVTQIHNEVEVLSKLQGYPGIIKLVDFYDSSAFMFLVFELAKGGELFDLLTQEVTIHERTARRIMWQLFHALYHMHENSYVHRDLKPENVLLDSENNVLLSDFGFAHKIRKDEQLFDVLGTPAYFAPETLKCVVYDNATGYGKPVDLWACGVILYTLLVGQGPFWHRKDTIMYRKIMEGKYSLAGAEWEGIGECPQDLISQLLVVDPSKRINAMDALCHPWFKGLSVCHKCEKLQQ-ALPKRQRIKFKVLVCTIMTMKKLYYTFHERFIPQTYSSVLKEPYNFKDVRKIVDSCSFNLYGHWVKKTTDNNQSRTALFEN 1197
A +FY KY+P D++G G+SSVVR+C ++ G EFAVKI++ +++ + ++ E +L ++ G+P II L+D Y+SS+FMFLVF+L + GELFD LT++V + E+ R IM L A+ +H N+ VHRDLKPEN+LLD + LSDFGF+ + E+L ++ GTP Y APE LKC + + GYGK VDLWACGVIL+TLL G PFWHR+ +M R IMEG+Y + EW+ +DLIS+LL VDP R+ A AL HP+F+ +CE Q L RQR F+V V T++ ++ + H R P T +++L++PY + VR ++D+C+F LYGHWVKK Q+R ALF++
Sbjct: 15 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFE------RCEGSQPWNLTPRQR--FRVAVWTVLAAGRVALSTH-RVRPLTKNALLRDPYALRSVRHLIDNCAFRLYGHWVKK--GEQQNRAALFQH 376 The following BLAST results are available for this feature:
BLAST of TCONS_00056295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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