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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056300 ID=TCONS_00056300|Name=TCONS_00056300|organism=Clytia hemisphaerica|type=transcript|length=2572bpRun BLAST on NCBI protein sequence of TCONS_00056300-protein >TCONS_00056300-protein ID=TCONS_00056300-protein|Name=TCONS_00056300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp MAIITEEITETQLIHGNGTALPEKRNGYHKIANGRNGFNNNREQKPAQRDRun BLAST on NCBI transcript from alignment at scaffold_272:6945..20212+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056300 ID=TCONS_00056300|Name=TCONS_00056300|organism=Clytia hemisphaerica|type=transcript|length=13268bp|location=Sequence derived from alignment at scaffold_272:6945..20212+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_272:6945..20212+ >TCONS_00056300 ID=TCONS_00056300|Name=TCONS_00056300|organism=Clytia hemisphaerica|type=CDS|length=19872bp|location=Sequence derived from alignment at scaffold_272:6945..20212+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056300 vs. Swiss-Prot (Human)
Match: SPTC2 (Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1) HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0 Identity = 311/482 (64.52%), Postives = 387/482 (80.29%), Query Frame = 3
Query: 462 QQLFEETPLIVAVITYIGYGVLVVFGYFRDFLRLYKFEKTKAAKEKG-RMGFVPLYADFESFYTRNLYTRIRDCWNRPICSVAGAEVTLLDRDSEDYNWNFSITGKTTR-VINMGSYNYLGFGECTGPCTDAAEDTITGCGVGSASTRSETGMHEKQEELENIVARFVRKEAAVCFGMGFATNSTXXXXXXXXXXXXXXDELNHASLVLGTRLSGAKVYVFKHNDMEDLERILRTCIVQGQPRTHRPWKRMIIVVEGIYSMEGSIVKLPEIIEXXXXXXXXXXXDEAHSIGALGPNGRGVVDYFGLDTTDIDIMMGTFTKSFGASGGYIAAEKHLVDHIRXXXXXXXXXXTMAPTVMQQVISSMKIIMGEDGTNEGARRLKQLKDNIIMFRQKLEDKGFIIYGHEASPVIPLLLYMPAKIAAFSREMLKRGVGVVVVGFPATPIIESRSRFCLSAAHTPEMLNEVLDALDDVGNILQLKYSR 1901
+ FEETP++VAV+TY+GYGVL +FGY RDFLR ++ EK A E+ + FV LY DFE+FYTRNLY RIRD WNRPICSV GA V +++R S DYNW+F TG + VINMGSYNYLGF TG C +AA + G G STR E G +K EELE +VARF+ EAA+ +GMGFATNS IP+++G GC I+SDELNHASLVLG RLSGA + +FKHN+M+ LE++L+ IV GQPRT RPWK+++I+VEGIYSMEGSIV+LPE+I LKKKYKAYLYLDEAHSIGALGP GRGVV+YFGLD D+D+MMGTFTKSFGASGGYI +K L+D++R S+S+ YA +++P V++Q+I+SMK IMG+DGT+ G ++QL +N FR++L++ GFIIYG+E SPV+PL+LYMPAKI AF REMLKR +GVVVVGFPATPIIESR+RFCLSAAHT E+L+ L +D+VG++LQLKYSR
Sbjct: 60 NEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRYWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIKGVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFLGVEAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLSPPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSR 541 The following BLAST results are available for this feature:
BLAST of TCONS_00056300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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