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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056301 ID=TCONS_00056301|Name=TCONS_00056301|organism=Clytia hemisphaerica|type=transcript|length=617bp
CACAACAACCAGGTTTTCGGTTCGGACCTTCTTCCTCGCTTGGTCAACAC
AGTGTCTATgataatttataaattttggAGATTTTGGAGATGAATGTGTT
ATGATAAAATAGATTTGAACAAACAATGGCAATAATAACAGAAGAAATAA
CAGAGACACAACTAATACATGGTAATGGCACTGCTTTGCCTGAGAAAAGG
AATGGTTATCATAAAATAGCAAATGGAAGAAATGGCTTCAATAATAATAG
AGAACAGAAACCAGCACAAAGAGACAAACCTAAAAAACAACAATTATTTG
AAGAGACTCCACTTATTGTTGCTGTTATAACTTATATTGGATATGGTGTT
TTGGTTGTATTCGGTTATTTTAGAGATTTTCTTAGGTTGTACAAATTTGA
GAAAACCAAAGCTGCAAAAGAAAAGGGTAGAATGGGGTTTGTTCCATTAT
ATGCAGACTTTGAATCATTTTATACGCGTAACCTTTATACAAGAATCAGA
GACTGCTGGAACCGTCCAATATGCAGTGTAGCGGGTGCAGAAGTAACACT
TCTTGACAGAGACAGTGAAGACTATAATTGGAACTTCAGcATCACTGGTA
AAACCACTCGTGTCATA Run BLAST on NCBI transcript from alignment at scaffold_272:7119..14543+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056301 ID=TCONS_00056301|Name=TCONS_00056301|organism=Clytia hemisphaerica|type=transcript|length=7425bp|location=Sequence derived from alignment at scaffold_272:7119..14543+ (Clytia hemisphaerica)
CACAACAACCAGGTTTTCGGTTCGGACCTTCTTCCTCGCTTGGTCAACAC
AGTGTCTATgataatttataaattttggAGATTTTGGAGATGAATGTGTA
AGTATAAACTTGATATTCACTTTGTTTTGAATGAAATGTGAGTTCTATAA
AGCGTATGAATTGAAAGTGAGCACCACAAATTTTAGAGCAAGGTTGTCAG
GGTGATAGCTACTACATGTAGGCAAACAAAATATCATCCTCCAGGATGCA
AGACCAAGTTCAATTTGTCAATCTGCAGACCTAGACTTAGTTATAGTTTG
GTTACCATATAGCTAACTTCATTCAAATATAAGCGACCCTTTAgtggggg
gggtttcagggggtacccgattccgcaataccgccaattttttctccaat
ttccgtcaaaccgtcttaaattgaaccaaaattccgtcaccgaaaattcc
tttgaaattcaatatttttgtcgaaaattccgcaaattttaagaatatct
tttaccaattccgaaattccgcaaatttttttgctaaattccgtttttcc
gcactaaaattatCTAATTTttcgtctccgtcagagaacccaatttccgt
aattccgtctaaattttcgccaaattccgccactccgtccgaaaaaaggg
ccgattccgctccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctttcgctacaccg
gacgtaataagtccggtgtcagtccggtgttgcatacagggaattttgga
cgccggacatttatgaaacaaaaaattacgaaaaaccggacgcaccggac
ttgtCATGtgcggtgttttgattgtccggtggaaaaaaatatccttctcc
gacaccggacatccgacttttgtaaaaaaaattctcattttacaccggac
tttcgcgtgtccggtgttcgttaagtccggtgcgtcggcagggtccttcg
GTCGGTCGGTGGTAAAGATtttcgggtttccatttttccatccatttttg
gagtacattcttggaggaaactgccagccagcctgCAGCCAAAACAACTg
cgtgtaatgggtggtttaaaattatgacctttgaacactgtgaaagggtc
acgtgcgtttgcgtagggtaaaatggagaaatgcgaaaatcaactttggc
aaaaaatttttgaaaaatgaccctacaagttttgactatatctttttatt
ccatgaagagattactttcaaataaaaaatgtactaACAATGAATgtgta
agctttctagaaatccaaacataaattgcatagcttttaccaaaaaatag
tgCTATTTTTACTtccactttaggatcagaaacagtcaaaaaccagcttt
ttccaattttcttcgagttacaggaattaattccttgtttgttttgatct
gaaattttcagtaggggtggccaacatggttcctttgctcatatcagggg
ggcccgagacgggggtaagagaattaaagtttttaagtaaaatcttaata
atagattgtcccagccttatccctctttcaaTAAAGCTTCCTATagcttt
tgtccttcagaaaaaccaaaaatattggccttaattgcttgctttcagtt
cctgtagccagtagtgtgaccccctgtatttctattttgtgaCCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagagaaa
gcgaaagtgaaatcgcgcgatctgattggatgaaaaaagaccgcgggagc
tggaaacaaatggaattctctagaattctcattcgaAAAACAAGATGGgg
gcgagaaaagcacgtcttttgctttggacgaaaggttgtaaattctggtc
gattttaaggttttatcttatctcatctcatttactgtaattagtagagg
cttcttcaatgtttggggatggtaagtctgtaaaagttatttgtttttct
gtggaagaaagtgtttaaaaaagcattttttgtgctcaaggtttattttt
cttcgcaaatttttgtcttcaatcttaaatagacgaacgagtatttgact
gatagTTATggttttttcacagaacatagtaaaactattcaggaacttag
acctttttacagaatttcaaaaaatctgttagttctggagatatattgaa
aagtttggGCATGAGTAGttcgcgttcgtgtttcgcgttcccaaaccaaa
cgcatgTGGGGTGGACatgccaaaattttcccctcaatttttagaaacca
aactaatcttatttgaaagtccttacctttgtgagaagaatgaggggtca
tttattagaaatggttaagtattcccaaagttattccattttcaaaacac
aaaaaaatcaccttttcaaagaattgcCTCCTTAcgtacaccacgccagc
aagaaataattttcggaagcaccaaaatccgcgccaaaaatggcagatga
aatctagtcttccgtgtagcggggtgtggggagttttgccggtgcggtct
gaaaatcggcccgatgactgttaaacttaagcttatcgctaatgagctgg
aaatgatagctaaaaacaactttcaccactagaaagatgaaatcctcagc
tttcagatggtgtatggtgcttaaaagaaaaaatctgcaatcttgtgaaa
aaacctcaatttcttcttatttttcgaaattccagacggcctgtagattt
tcaaataaagcactttgtgatagattgtagccttaTCCTAcactgggttt
actaaaaaaaattacgattgcaaagatgaaccagctcaacaGTGACAGCC
ATTTGTTCAATGTGtgtcgagaattttccggtgccgtggtcagcgctaaa
tcgtgttttcaccttgacgtcgaaaaacatgaatatcttttgaaagaaaa
tagatacctagATTCCATttgttttacttgtttccctgataattcctgat
tgatttaaaaaaaagaatgaacagatttggatgatttaaaggtaagtact
aatgcattgaagttcatttttgtaaattcttcctcgttccgcgcaaaaaa
tcccgacgagtgcgcaccctaactgtgacctccgaccccgaaatggcgca
tgtaatgataaacaaagtcaaaatgctgcgaatgtgaaatcgctcgcaaa
aaatcagcaataataaaatttttgaacgaaggaaaggtcattgacagaaa
aagtccgacaaatttaccgactcaccgactcaattctactcaattttcga
gagtcggtcgggcgacgcgaaacaaagatatttgtgattacCGCCTTAAG
GGACACTTGTATTGTAACCAGAcccaatcaatcgaacttgtcgaatcaat
cgaacaatCGAGCTAATATCATCAAACTCCATCGAAcaattaaagttcga
ttaaagaatttaatcaACTCATAGGGTCCCCCTTTACTAACAGTTTTTTC
AAGgtcagaaaatcaaatatctgatgaCCAACAGATTCAATGtgaaaagt
aaataaagaaaatgggtttatttgttaagtttcaaTTATCGGGTGttgag
aaatggcattttttaaAAGCTGAAACCAACATTTTGGGTGTTTTGCAATG
ATGTCAACATTTTCctaggagcattttcagaaagaaTCATTCTCAGGGCT
AGATAGCCCTGAGTTTGtcgtatccaaaaatggtatggtttgtaaTGTTT
TAATGTCTAGATCTggagataattcatttttaaggtgggtaaatatgctg
aaTTAAACTGCTggctcagcaaaaaatatcaataattttcaatatttaaa
tcaaaatatctcgagatctagacattgaaatttgacaaacaataccattt
ttggatatcatattattaggagcataatatgaaaaatttgccctgatcta
aggggtgcccaacaaaaacctgttttaaggtcTTATCTGAGTCTGGTCTA
GGGAGAGGCAAAGAGCACGGTGGATGCGGTTAATGAGATCCGGTATTAGA
ATGGTGGTGCTTCTCTTGTTTTGAAAAGCTATGACTTACACtaatatttt
actttatatCCGTTCCTTACTCCAATACACCAAAAGTAATTACTGCCTCA
CTCCGAATATATTGCACCATTTATAAACTGATCATGACATCATTTTATTT
AGTTATTTTATTTCTAAATATATTGTTTCTTGTAGGTTATGATAAAATAG
ATTTGAACAAACAATGGCAATAATAACAGAAGAAATAACAGAGACACAAC
TAATACATGGTAATGGCACTGCTTTGCCTGAGAAAAGGAATGGTTATCAT
AAAATAGCAAATGGAAGAAATGGCTTCAATAATAATAGAGAACAGAAACC
AGCACAAAGAGACAAACCTAAAAAACAACAATTATTTGAAGAGACTCCAC
TTATTGTTGCTGTTATAACTTATATTGGATATGGTGTTTTGGTTGTATTC
GGTTATTTTAGAGATTTTCTTAGGTTGTACAAATTTGAGAAAACCAAAGC
TGCAAAAGAAAAGGGTAGAATGGTAAGGCATTGTATTTCACTTTTAAATA
AGATAACATTATACAGATTAAAAATATGTACCTGAGGAATGTACTTGGAG
ATTACAATACTGGAAACATACAGCTTTAGATATAGGCAGATATAGGCTGT
ATTTTCATTCCAGAAAAAGTTTCAGTTTAGTATCATCCAAAGATTGTTGT
TGATTTATGTTATTATTACATAATCAGACAGAATCATGTGTCGAAAATTC
AATCAACTCGAAATGTTCTTATTATCAATATATGACTGACTTTTTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
GGATATGGTGTTTTGGTTGTATTCGGTTATTTTAGAGATTTTCTTAGGTT
GTACAAATTTGAGAAAACCAAAGCTGCAAAAGAAAAGGGTAGAATGGTAA
GGCATTGTATTTCACTTTTAAATAAGATAACATATACAgattaaaaatat
gtactttgaGATTGCAATACTGGAAACATACAGCTTTAGATATAGGCAGA
TATAGGCTGTATTTTCATTCCAGAAAAAGTTTCAGTTTAGTATCATCCAA
AGATTGTTGTTGATTTATGTTATTATTACATAATCAGACAGAATCATGTG
TCGAAAATTCAATCAACTCGAAATGTTCTTATTATCAATATATGActgac
tttttttaattcttagGGGTTTGTTCCATTATATGCAGACTTTGAATCAT
TTTATACGCGTAACCTTTATACAAGAATCAGAGACTGCTGGAACCGTCCA
ATATGCAGTGTAGCGGGTGCAGAAGTAACACTTCTTGACAGAGACAGTGA
AGACTATAATTGGAACTTCAGgtgtgttttttattttataaatcaCTGAT
TAAAAAGGTAAACTTTCAAAGGTGGTTCCTGTCAGCATATTGTACATCTG
CAACTTGGTTTCATCCCAAAAACAAAGTCAGAAATAAGATGAggcgagat
tcattgtttctgacattgttgtaaacttggcaatccttcatcaaatgaca
agatttttcgatcagtGCTTTCTTCAAAGTGAACTCTATTTCTTGATACT
TTTCTCTAAAATTCTCCAGCAACGTTTAGTCAACGAATTGAGtttgaaat
tgtgtgtgcttataaagaacctttcattttctggcttaaGATCAGAGAGC
ATTCCTAATTAAAGTATTACAAAGTGAATTCGTACTCAAAACTTTTCTCC
TTCAGGCATCAGGGAGATGCAAGCAATAGCTTGACTGCTGGTATCATGTA
CCAAAATTGatagtttttaggatttctGGCAGACTTGATGAATTAAcaac
aagaagcccagagggcatgaaggcccagcgaataaaaatAAGAACTGAAC
AAGACTTAAGTAGTAGAGGGTATTTGAACCTGGAGTTGCTAATACAAGCC
AtagacgccttagaccactcggctaTCTCTTATTGGCAACAAAgagaaat
aattcaaaatatttaatcttattccctaacacgtgaacaactgaactgtt
cacatgatagagaaatgtaaaaacaacttttttaaaagaacatcttccta
aaaagaaaaaggtttgttACGGTTATTTCTGTGTAAAtcacattgttttt
cttaaaacgtaCTACATCTGCAGACATCTGTTATATTCTTATAGTTATAA
TAGTTAAAATAGTTAAtcgtattttctccttttatgtttttaaccaataa
agacgattgcaattgttttttattctgtcaatcatgttctaacagccaat
caaatcttTCACAATATGGACTAGTAAGATGGgttacacacacacacact
aACAGACACGGGCACagtgctaatgaaaggcccgtACGCtaagcgctggg
ccaaaaacaAAGTTTCAAGTTAAGTCCTGACTGCATCTTTTGGAGAGGTT
CATACCATGTGATACCTTGTCTTATTTTGCAAAACTTGTCAAGGACCTTG
TAGGAAGCGTCAGAAGCGTAGGAAGAGTCCACCAAAAGTTCTTTGATTTA
AAGAAAAGCTGAATTTGATTCAACTAGCgactttattctttttttagcAT
CACTGGTAAAACCACTCGTGTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056301-exon-scaffold_272-1491911889:7119..7215 | TCONS_00056301-exon-scaffold_272-1491911889:7119..7215 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1510915933:7119..7215 | TCONS_00056301-exon-scaffold_272-1510915933:7119..7215 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1575043694:7119..7215 | TCONS_00056301-exon-scaffold_272-1575043694:7119..7215 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1491911889:12004..12340 | TCONS_00056301-exon-scaffold_272-1491911889:12004..12340 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1510915933:12004..12340 | TCONS_00056301-exon-scaffold_272-1510915933:12004..12340 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1575043694:12004..12340 | TCONS_00056301-exon-scaffold_272-1575043694:12004..12340 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1491911889:13135..13289 | TCONS_00056301-exon-scaffold_272-1491911889:13135..13289 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1510915933:13135..13289 | TCONS_00056301-exon-scaffold_272-1510915933:13135..13289 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1575043694:13135..13289 | TCONS_00056301-exon-scaffold_272-1575043694:13135..13289 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1491911889:14516..14543 | TCONS_00056301-exon-scaffold_272-1491911889:14516..14543 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1510915933:14516..14543 | TCONS_00056301-exon-scaffold_272-1510915933:14516..14543 | Clytia hemisphaerica | exon |
| TCONS_00056301-exon-scaffold_272-1575043694:14516..14543 | TCONS_00056301-exon-scaffold_272-1575043694:14516..14543 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:7119..14543 + |
Blast
BLAST of TCONS_00056301 vs. Swiss-Prot (Human)
Match: SPTC2 (Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.544e-39 Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 3
Query: 291 QLFEETPLIVAVITYIGYGVLVVFGYFRDFLRLYKFEKTKAAKEKGRM-GFVPLYADFESFYTRNLYTRIRDCWNRPICSVAGAEVTLLDRDSEDYNWNFSITGKTTR 611
+ FEETP++VAV+TY+GYGVL +FGY RDFLR ++ EK A E+ FV LY DFE+FYTRNLY RIRD WNRPICSV GA V +++R S DYNW+F TG +
Sbjct: 61 EAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRYWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIK 168
The following BLAST results are available for this feature:
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