TCONS_00056303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056303
Unique NameTCONS_00056303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2020

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056303 ID=TCONS_00056303|Name=TCONS_00056303|organism=Clytia hemisphaerica|type=transcript|length=2020bp
ATTCCAAAACATAATCAAatactgagcaaatcgatttttatcttttgaag
aagaaaatagcTAACAAAAAGCTATAATAATAGGCTTCTAGACTAGGTTG
TTTTGTACGAACTCTCTTTAACATGGAAGGGAGTTGTTGGATTAATTTTA
TTAAGATTTTCAACAATTTGACTCTCCATATGAACATCTATTTTTCGATA
CTTTTACCCTTACTATATTTCTTTTGAGGTTTTTGCACTTATTTTTCAAG
TCACAGAGCACCAGCACTTAGTAATGTCTaatatttgaagaaatttttcg
aTTTGTTATAGTTTGATTTTTCCATTTGTATAGGCTCGAACATTTCATCC
TCTTTTTAGAAAATGAGATTCAAAGGCATCCCTTTTTAAATATAagttaa
attttatttaaatttgtttaccttttagctaaactagaaaaaaaagaaag
aaaacaaattaaaatagAATGAAACTGAATGAAAACATGTTTTATGGCTT
GAAGTTGACAAAATAATTATGCATCGGGCTGACAAAAAACGGGTAACTTT
CAAACGCCGTGGAGAAACAGTCGGTTCTTTACCAGAAAGTATTATAGATG
ATCAATGGTCAACGCGGTGTACCACATCTGATTGGGACTATTTATTTCCG
AACGGTTCTATCGGCTATAGTTGCAGTTTCTGTCCTACGAATCCAAATAT
ATTTAATGTTTGTTTTGGACAAGCTGGTAATGCTCAGATACACGATGAGG
AGCTTGTTAATCAACCGATTGTGAAAAACATTGGCATTGcttttagtgtt
ttttataagtataGTGGAGAAGATGATGATAATAACGGAGATAACGTTGA
AAGTGGAGAAATTAATGGTGGAGGTAATCCTAATGATAGTGATGATGGAG
ATAATGAATCAGACGGCAGTGATGAATTAATAAATTCGAGCTGGTATTTC
ACATATTCTTCTCTACCACCACctactttttcaaaatgtggGAAATATTT
TACTACAATTCTCAATAATGGATCAAATGGAGTACGTGTCTTAAAGATAT
TGGATGGTGAGAATTTAGAAGATGATAAATTGGTTGATTTGGTAGCTATA
GCGTGTAAAGGTGGCAATGAAATAGTGACAGGACGATGCAAAATGTTTGC
TATCCATGACAATTATGCTGCAACTGTAGTTGATATTGATTCTTCTCATA
ATTATATGATAACTATATGGCGTTTCGGGTACAATTCCAAAAATGAACCA
CACATCAGATTCTATTGGTCCAAAAAGATAAGAGAATTATTTACTCTCGA
TAATAATTATGTTGAATCATTTTTTATTAATCATGAATTTACAGCATCTG
GCAAATATATCACTTTTTTACTGGCAAATGGCTTTTATTTTACTTTGGAT
ATAGAAGCTAAAGATTGCATATACTCTGGACATCTACCAACGATTTTAGA
TAACCCAAACGCCGTCCAGAATATCACGAACATCACTCACTACGTATTTA
CAAACCAAATGCATTTCATTTTTGGATTCCTTAACGAATGTTTATCCATT
AATCCTGCATCAAACAACATTGAATCTTTAATCAAATTACCTAAAGATCA
AATTATTACTCACGTGAGATTCTCCAACACCAAAGAGTTGCTTTCACTAT
GTACAGGCCCTGAAGGGAACGTTTTTATATACACTTTCACAAATAAACAC
CAGTTTGATCAACTTTATAAAATCAATAACTTTGGATCAACGTCAGTTGC
AAGATATTGTGATTTTTCATGGACTTCTGAAGAACTTATAGTATCTTATC
AAAACGGTGACTATAGAGTCTGGCAGTTTCCAAGACGTCtcaaattgaaa
gaaattgcGAGAATTCAAATATTGAAATTGGTTGCAGATTCTGATATTGA
ACAATTGCTATTACCAAAGTCACTAAAAGAGTATTTATTTTTTCGATAGT
CGAAACTTTGTGAAATTTATGTATAACCAATATGGAATAATGAATATACT
ACTAATTCCGACATCTGACA
Run BLAST on NCBI

protein sequence of TCONS_00056303-protein

>TCONS_00056303-protein ID=TCONS_00056303-protein|Name=TCONS_00056303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MHRADKKRVTFKRRGETVGSLPESIIDDQWSTRCTTSDWDYLFPNGSIGY
SCSFCPTNPNIFNVCFGQAGNAQIHDEELVNQPIVKNIGIAFSVFYKYSG
EDDDNNGDNVESGEINGGGNPNDSDDGDNESDGSDELINSSWYFTYSSLP
PPTFSKCGKYFTTILNNGSNGVRVLKILDGENLEDDKLVDLVAIACKGGN
EIVTGRCKMFAIHDNYAATVVDIDSSHNYMITIWRFGYNSKNEPHIRFYW
SKKIRELFTLDNNYVESFFINHEFTASGKYITFLLANGFYFTLDIEAKDC
IYSGHLPTILDNPNAVQNITNITHYVFTNQMHFIFGFLNECLSINPASNN
IESLIKLPKDQIITHVRFSNTKELLSLCTGPEGNVFIYTFTNKHQFDQLY
KINNFGSTSVARYCDFSWTSEELIVSYQNGDYRVWQFPRRLKLKEIARIQ
ILKLVADSDIEQLLLPKSLKEYLFFR
Run BLAST on NCBI

transcript from alignment at scaffold_272:21394..23740+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056303 ID=TCONS_00056303|Name=TCONS_00056303|organism=Clytia hemisphaerica|type=transcript|length=2347bp|location=Sequence derived from alignment at scaffold_272:21394..23740+ (Clytia hemisphaerica)
ATTCCAAAACATAATCAAatactgagcaaatcgatttttatcttttgaag
aagaaaatagcTAACAAAAAGCTATAATAATAGGCTTCTAGACTAGGTTG
TTTTGTACGAACTCTCTTTAACATGGAAGGGAGTTGTTGGATTAATTTTA
TTAAGATTTTCAACAATTTGACTCTCCATATGAACATCTATTTTTCGATA
CTTTTACCCTTACTATATTTCTTTTGAGGTTTTTGCACTTATTTTTCAAG
TCACAGAGCACCAGCACTTAGTAATGTCTaatatttgaagaaatttttcg
aTTTGTTATAGTTTGATTTTTCCATTTGTATAGGCTCGAACATTTCATCC
TCTTTTTAGAAAATGAGATTCAAAGGCATCCCTTTTTAAATATAagttaa
attttatttaaatttgtttaccttttagctaaactagaaaaaaaagaaag
aaaacaaattaaaatagAATGAAACTGAATGAAAACATGTTTTATGGCTT
GAAGTTGACAAAATAATTATGCATCGTAAGTTTAATTATCTAACGTTTTC
TAACTTTggtaatacaaaaaaaatttcctcttGAGAGATTGAAACTTGGT
CTAAATTGACTTAACTTTTGATAGCAAAGTTAAAATTATAAGGGCTTTGA
TTGGCGACGATAAAGAAAATTGATACTTCTTATCTTCATGACTTTTAAAG
CCAGTCAGTGGGGTGAAGTTCGAGCTATATCTTGACGATTGAATAAATAT
TCTTAGACAACTTTTTACATTGTTGATATAAACAGCACAACAAGGATCTT
TCTTAATCATTCATTATCTTCTAATTTCATTTTGTATCTGTTATATTTTT
AGGGGCTGACAAAAAACGGGTAACTTTCAAACGCCGTGGAGAAACAGTCG
GTTCTTTACCAGAAAGTATTATAGATGATCAATGGTCAACGCGGTGTACC
ACATCTGATTGGGACTATTTATTTCCGAACGGTTCTATCGGCTATAGTTG
CAGTTTCTGTCCTACGAATCCAAATATATTTAATGTTTGTTTTGGACAAG
CTGGTAATGCTCAGATACACGATGAGGAGCTTGTTAATCAACCGATTGTG
AAAAACATTGGCATTGcttttagtgttttttataagtataGTGGAGAAGA
TGATGATAATAACGGAGATAACGTTGAAAGTGGAGAAATTAATGGTGGAG
GTAATCCTAATGATAGTGATGATGGAGATAATGAATCAGACGGCAGTGAT
GAATTAATAAATTCGAGCTGGTATTTCACATATTCTTCTCTACCACCACc
tactttttcaaaatgtggGAAATATTTTACTACAATTCTCAATAATGGAT
CAAATGGAGTACGTGTCTTAAAGATATTGGATGGTGAGAATTTAGAAGAT
GATAAATTGGTTGATTTGGTAGCTATAGCGTGTAAAGGTGGCAATGAAAT
AGTGACAGGACGATGCAAAATGTTTGCTATCCATGACAATTATGCTGCAA
CTGTAGTTGATATTGATTCTTCTCATAATTATATGATAACTATATGGCGT
TTCGGGTACAATTCCAAAAATGAACCACACATCAGATTCTATTGGTCCAA
AAAGATAAGAGAATTATTTACTCTCGATAATAATTATGTTGAATCATTTT
TTATTAATCATGAATTTACAGCATCTGGCAAATATATCACTTTTTTACTG
GCAAATGGCTTTTATTTTACTTTGGATATAGAAGCTAAAGATTGCATATA
CTCTGGACATCTACCAACGATTTTAGATAACCCAAACGCCGTCCAGAATA
TCACGAACATCACTCACTACGTATTTACAAACCAAATGCATTTCATTTTT
GGATTCCTTAACGAATGTTTATCCATTAATCCTGCATCAAACAACATTGA
ATCTTTAATCAAATTACCTAAAGATCAAATTATTACTCACGTGAGATTCT
CCAACACCAAAGAGTTGCTTTCACTATGTACAGGCCCTGAAGGGAACGTT
TTTATATACACTTTCACAAATAAACACCAGTTTGATCAACTTTATAAAAT
CAATAACTTTGGATCAACGTCAGTTGCAAGATATTGTGATTTTTCATGGA
CTTCTGAAGAACTTATAGTATCTTATCAAAACGGTGACTATAGAGTCTGG
CAGTTTCCAAGACGTCtcaaattgaaagaaattgcGAGAATTCAAATATT
GAAATTGGTTGCAGATTCTGATATTGAACAATTGCTATTACCAAAGTCAC
TAAAAGAGTATTTATTTTTTCGATAGTCGAAACTTTGTGAAATTTATGTA
TAACCAATATGGAATAATGAATATACTACTAATTCCGACATCTGACA

Coding sequence (CDS) from alignment at scaffold_272:21394..23740+

>TCONS_00056303 ID=TCONS_00056303|Name=TCONS_00056303|organism=Clytia hemisphaerica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_272:21394..23740+ (Clytia hemisphaerica)
ATGCATCGGGCTGACAAAAAACGGGTAACTTTCAAACGCCGTGGAGAAAC
AGTCGGTTCTTTACCAGAAAGTATTATAGATGATCAATGGTCAACGCGGT
GTACCACATCTGATTGGGACTATTTATTTCCGAACGGTTCTATCGGCTAT
AGTTGCAGTTTCTGTCCTACGAATCCAAATATATTTAATGTTTGTTTTGG
ACAAGCTGGTAATGCTCAGATACACGATGAGGAGCTTGTTAATCAACCGA
TTGTGAAAAACATTGGCATTGcttttagtgttttttataagtataGTGGA
GAAGATGATGATAATAACGGAGATAACGTTGAAAGTGGAGAAATTAATGG
TGGAGGTAATCCTAATGATAGTGATGATGGAGATAATGAATCAGACGGCA
GTGATGAATTAATAAATTCGAGCTGGTATTTCACATATTCTTCTCTACCA
CCACctactttttcaaaatgtggGAAATATTTTACTACAATTCTCAATAA
TGGATCAAATGGAGTACGTGTCTTAAAGATATTGGATGGTGAGAATTTAG
AAGATGATAAATTGGTTGATTTGGTAGCTATAGCGTGTAAAGGTGGCAAT
GAAATAGTGACAGGACGATGCAAAATGTTTGCTATCCATGACAATTATGC
TGCAACTGTAGTTGATATTGATTCTTCTCATAATTATATGATAACTATAT
GGCGTTTCGGGTACAATTCCAAAAATGAACCACACATCAGATTCTATTGG
TCCAAAAAGATAAGAGAATTATTTACTCTCGATAATAATTATGTTGAATC
ATTTTTTATTAATCATGAATTTACAGCATCTGGCAAATATATCACTTTTT
TACTGGCAAATGGCTTTTATTTTACTTTGGATATAGAAGCTAAAGATTGC
ATATACTCTGGACATCTACCAACGATTTTAGATAACCCAAACGCCGTCCA
GAATATCACGAACATCACTCACTACGTATTTACAAACCAAATGCATTTCA
TTTTTGGATTCCTTAACGAATGTTTATCCATTAATCCTGCATCAAACAAC
ATTGAATCTTTAATCAAATTACCTAAAGATCAAATTATTACTCACGTGAG
ATTCTCCAACACCAAAGAGTTGCTTTCACTATGTACAGGCCCTGAAGGGA
ACGTTTTTATATACACTTTCACAAATAAACACCAGTTTGATCAACTTTAT
AAAATCAATAACTTTGGATCAACGTCAGTTGCAAGATATTGTGATTTTTC
ATGGACTTCTGAAGAACTTATAGTATCTTATCAAAACGGTGACTATAGAG
TCTGGCAGTTTCCAAGACGTCtcaaattgaaagaaattgcGAGAATTCAA
ATATTGAAATTGGTTGCAGATTCTGATATTGAACAATTGCTATTACCAAA
GTCACTAAAAGAGTATTTATTTTTTCGATAGATGCATCGGGCTGACAAAA
AACGGGTAACTTTCAAACGCCGTGGAGAAACAGTCGGTTCTTTACCAGAA
AGTATTATAGATGATCAATGGTCAACGCGGTGTACCACATCTGATTGGGA
CTATTTATTTCCGAACGGTTCTATCGGCTATAGTTGCAGTTTCTGTCCTA
CGAATCCAAATATATTTAATGTTTGTTTTGGACAAGCTGGTAATGCTCAG
ATACACGATGAGGAGCTTGTTAATCAACCGATTGTGAAAAACATTGGCAT
TGcttttagtgttttttataagtataGTGGAGAAGATGATGATAATAACG
GAGATAACGTTGAAAGTGGAGAAATTAATGGTGGAGGTAATCCTAATGAT
AGTGATGATGGAGATAATGAATCAGACGGCAGTGATGAATTAATAAATTC
GAGCTGGTATTTCACATATTCTTCTCTACCACCACctactttttcaaaat
gtggGAAATATTTTACTACAATTCTCAATAATGGATCAAATGGAGTACGT
GTCTTAAAGATATTGGATGGTGAGAATTTAGAAGATGATAAATTGGTTGA
TTTGGTAGCTATAGCGTGTAAAGGTGGCAATGAAATAGTGACAGGACGAT
GCAAAATGTTTGCTATCCATGACAATTATGCTGCAACTGTAGTTGATATT
GATTCTTCTCATAATTATATGATAACTATATGGCGTTTCGGGTACAATTC
CAAAAATGAACCACACATCAGATTCTATTGGTCCAAAAAGATAAGAGAAT
TATTTACTCTCGATAATAATTATGTTGAATCATTTTTTATTAATCATGAA
TTTACAGCATCTGGCAAATATATCACTTTTTTACTGGCAAATGGCTTTTA
TTTTACTTTGGATATAGAAGCTAAAGATTGCATATACTCTGGACATCTAC
CAACGATTTTAGATAACCCAAACGCCGTCCAGAATATCACGAACATCACT
CACTACGTATTTACAAACCAAATGCATTTCATTTTTGGATTCCTTAACGA
ATGTTTATCCATTAATCCTGCATCAAACAACATTGAATCTTTAATCAAAT
TACCTAAAGATCAAATTATTACTCACGTGAGATTCTCCAACACCAAAGAG
TTGCTTTCACTATGTACAGGCCCTGAAGGGAACGTTTTTATATACACTTT
CACAAATAAACACCAGTTTGATCAACTTTATAAAATCAATAACTTTGGAT
CAACGTCAGTTGCAAGATATTGTGATTTTTCATGGACTTCTGAAGAACTT
ATAGTATCTTATCAAAACGGTGACTATAGAGTCTGGCAGTTTCCAAGACG
TCtcaaattgaaagaaattgcGAGAATTCAAATATTGAAATTGGTTGCAG
ATTCTGATATTGAACAATTGCTATTACCAAAGTCACTAAAAGAGTATTTA
TTTTTTCGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035468XLOC_035468Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056303-proteinTCONS_00056303-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056303-exon-scaffold_272-1491911889:21394..21918TCONS_00056303-exon-scaffold_272-1491911889:21394..21918Clytia hemisphaericaexon
TCONS_00056303-exon-scaffold_272-1510915933:21394..21918TCONS_00056303-exon-scaffold_272-1510915933:21394..21918Clytia hemisphaericaexon
TCONS_00056303-exon-scaffold_272-1575043694:21394..21918TCONS_00056303-exon-scaffold_272-1575043694:21394..21918Clytia hemisphaericaexon
TCONS_00056303-exon-scaffold_272-1491911889:22246..23740TCONS_00056303-exon-scaffold_272-1491911889:22246..23740Clytia hemisphaericaexon
TCONS_00056303-exon-scaffold_272-1510915933:22246..23740TCONS_00056303-exon-scaffold_272-1510915933:22246..23740Clytia hemisphaericaexon
TCONS_00056303-exon-scaffold_272-1575043694:22246..23740TCONS_00056303-exon-scaffold_272-1575043694:22246..23740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:21394..23740 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.54582	3.59145	0.909419	0.629318	2.43049	1.62834	3.60163	3.20675	2.014	2.37198	3.43361	2.25712	2.05855	2.00252	1.50173	1.77871	3.10302	3.55733	1.72845	1.24212	4.01546	4.32371	7.18773	5.59533	4.31178	5.31234	1.66544	1.17538	2.10912	2.68054
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001496SOCS_box
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035556 intracellular signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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