TCONS_00056310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056310
Unique NameTCONS_00056310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056310 ID=TCONS_00056310|Name=TCONS_00056310|organism=Clytia hemisphaerica|type=transcript|length=1390bp
TCAGGAGAGAAGAGCAAAACACAGAGGAGACGCTTGCTAAAAGTCCCTCC
TTCTCCATGACGAAAAGTTTGAACGACTCCAAACTCTTAGATGCAACTGC
CAGCATCAAGAAAATGGCTCTCGTTGATACTTCTAGTTTGGATGACGATG
GCACGGGGAGTATTGCAGCCTCTGTGCGTATTGAAAAAGCTTTATCAGAA
GCGCCTAGTGGAACTCTAACCACCACGCATCAAGTTGGCATGACACGCAC
AATCGCTATGTTATCCAAATTGTGGCTTATCACTGcgGAATGTTTCATCA
ATCTGGAGGATGCGACGCAAGCCGGTGGATGTATCTTGGAAGCGTCTTCA
ATTTTCCCTCTCTCTCCTGATGTTCTCTATATGAGAGGCCGTTTAAATGA
ACTCCAAGAGAACACTTTGGAAGCCATCGCTTGTTATGAAAGCGCGTTAT
CCATACATCCACATCACAAAGCTGCTCGCCAAAGAGTGGGTTTGTTATAC
CACGAGAGAGGAGACTGTGCACTAGCTGAAAAGATTCTCAGAGCATGTAT
TCTGTATGATACAAGCAATCATACTGCTTGGAACGATCTGGGTATTGTAT
TGGAGTCAACTGGTCGGTTTGATGAGTCAGCAGATTGTTTCCTTACTGCT
CTTAGACTGGAAGGTTCGGCTCCAATATCCAGTTTTACATCAATACCGCG
CGCTTTTAGAGCATTTGACACATCGTAAGGGATGGAAAATAGGAATATAG
TTTGAAATGTCTTCACATggtgctttttattagtttacAAACATTTCCCA
GTTTGTCCGAGAAAAAACGAAGCTTtaacccgcaaaatcgagggcGGTAA
TGCTGATTTATCGTCGTCCTCAGCCGGCCAGTCGGTCGATCAGGGTCTAG
ACAAATCGAAGAATGACACAGTTTCTGCCATAGGAAAAAAAGCATACATA
CAGCTCACTATTGTTTGACATAGCAACTTATTGTTGGAactgaaattttt
aatttaattgtATTTTTTAAGTGGTAGTAGTACTTTCGGGCCAATTGGAC
GTTATTTCTCATTTGTGAATCTTGCCCAAAGAATGATGCGATGGGAGCTT
tgtgctcatcctctagcgaaaagagtttctcataggaagtatatctatag
aggtctgcgattcagacaaGGAACTTTGTTAACTAGACTTACCAGTGCTC
TAGActcatttgtttaaaaaattgacaaagttGTCATAGTTACCTTGCTG
ATCTTGGGTTCTCGGGCATGACGGTaaaggtttttctttttgttcagtGT
ACGgttttttatgatttattttttaaatgaattggATTTGTATAAATTTA
TTGATTTGTAAAGATATTTaatttataaaacaaatttaac
Run BLAST on NCBI

protein sequence of TCONS_00056310-protein

>TCONS_00056310-protein ID=TCONS_00056310-protein|Name=TCONS_00056310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
RREEQNTEETLAKSPSFSMTKSLNDSKLLDATASIKKMALVDTSSLDDDG
TGSIAASVRIEKALSEAPSGTLTTTHQVGMTRTIAMLSKLWLITAECFIN
LEDATQAGGCILEASSIFPLSPDVLYMRGRLNELQENTLEAIACYESALS
IHPHHKAARQRVGLLYHERGDCALAEKILRACILYDTSNHTAWNDLGIVL
ESTGRFDESADCFLTALRLEGSAPISSFTSIPRAFRAFDTS
Run BLAST on NCBI

transcript from alignment at scaffold_272:119020..124670+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056310 ID=TCONS_00056310|Name=TCONS_00056310|organism=Clytia hemisphaerica|type=transcript|length=5651bp|location=Sequence derived from alignment at scaffold_272:119020..124670+ (Clytia hemisphaerica)
TCAGGAGAGAAGAGCAAAACACAGAGGAGACGCTTGCTAAAAGTCCCTCC
TTCTCCATGACGAAAAGTTTGAACGACTCCAAACTCTTAGATGCAACTGC
CAGCATCAAGAAAATGGCTCTCGTTGATACTTCTAGTTTGGATGGTAAAT
ATTGTTCCGATTTTATTTTTAACACTGAATGGGTTTTTGTTTGTGCTGGA
CCCATTTTGATAAATGCTTTTTTTTACATTCTATGCGATAGAAtatcata
tttccatatttccaTAGCACTTTTAAGTTTGACCACAGTCGAGGGCGATC
TAGAGGCTTCCGTTTTGTTAGGGGGTAACTCCTCTCCCTGGATTTCTTGA
TTCTTTCTTTCATTGCTGTATCAagcagagtgacatcaatgaccACTTTG
TAAGTCTCTGTCATTTCCCGGAAGTGATGATTGTATGATTGTATGATTGT
AATTTCGTTGTCATAAAAAAGTGTGATtattatgttttctttttcttttt
ctcccaAAGACGATGGCACGGGGAGTATTGCAGCCTCTGTGCGTATTGAA
AAAGCTTTATCAGAAGCGCCTAGTGGAACTCTAACCACCACGCATCAAGT
TGGCATGACACGCACAATCGCTATGTTATCCAAATTGTGGCTTATCACTG
GTAAGCCAACGTTTGATTCGTATCACAACCATATTTTTTTACTATcttat
tttaatttcaaacagTCCCGGACTACGCACGTTTTTATGAGAATGTAAtc
tattcatgatgaaatttgcCAAAGAATTTAGAATATACTAAGAATGTCAC
CATCCTGAAATTTACTGATACTGAGAATggcatttttagagcattttacc
tGTGAGggaatatacacgttttttttaagaaactagttttaccaagcagc
ctcaatgtttcttaagaaatcggccttttgagccttaaatgtttctttca
tgtttctaaactttttgacataatcagcctatttttcattcaaagaaaat
aaatatttgttttgattggaaggttcttaaaaaaaatgaattaaaaaatg
ttattttctcattctcagcctcagcatgttttttagatgtttcttagttt
ttaggcattctgagcatCATGTTTcataaaagtgtgtttcttaaaaaaga
aaaaacgtgtttgCGCGTTTTTTACTTCTGACAAAATGATAAGCTGACAA
ACATTACATTGTACGAAAATTCTGCTTGCCTTATTTTAAACGATATTTCA
AGTATGAAAAATATGTAGTCTGATAGGAGTCAGTATGATGGTGACGTAAT
AGGCTAAATTTGTAAAAAGTTGGAAAGGGGGGCTCAAAActgtgaaaaat
ctttttgatgtctttttttttcttagcgGAATGTTTCATCAATCTGGAGG
ATGCGACGCAAGCCGGTGGATGTATCTTGGAAGCGTCTTCAATTTTCCCT
CTCTCTCCTGATGTTCTCTATATGGTATGCTCCTCCAAAACATTCTTCTT
TCTTACAGGGTGTCCATAAAAAAGACAATAAATGTAATTCACACATTTTA
ACGATGgaacattccattttatatccatacacgGGAATTGACATTCCCAg
ggaataaaaaatattttaaggggGTTTTCATTCGTCCATCGTCACTTTAA
ggtataaaaataaattaagagttttttcgcaaattttgcaGGGGGTATCC
GCACATTtccatgaaatatttttttgacttgaaattatgGAATTGGAATG
GCCCAATTTAGTTTATATAACAATGAATTATTAAATTATATACCATCACT
TTCACACAGTCAACTTTTAGAATGACATCCGTCTATCTGACGGCCTTATG
TATGTTCAAAATGCTGGTCCGATTGACTGAAATGTGACAGGCTTGTTCCT
tgggaatacacgtttttttttttattagaacacctaaaatttggctgagc
ctggatgtgcttatttttttagcaattttcagcctaaaatgttcttaaat
gtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNaaactgaggctgggcatgttcttaagatgttcttaatttttc
gacgaatttcagcctatatgttcttataaactaggttctaataaaaaaaa
aacgtgtacccggGGTactttttgaaaacgaggctagCACTTTTGGTTAG
CCTGGAcacttaaaaaaatgaaaaaaatattcgacCATTTAAGTCTTGTT
ACCTATGTTTGCTTTCCTTGTAGAGAGGCCGTTTAAATGAACTCCAAGAG
AACACTTTGGAAGCCATCGCTTGTTATGAAAGCGCGTTATCCATACATCC
ACATCACAAAGCTGCTCGCCAAAGAGTGGTGAGTATATTAACTTATAATA
AGCCTTCGCTTCTTCATTATGCAAACTGATGAGTGAGATAGTGTttcatt
aaagttttttttgaaaaaaaattgcctaATCGGTTATCAGCTTGATTTTT
CCCAACTCTTTTCATTCATAGGAGGTCTCAAAAATTGTTTATCCGTATTC
TGTGAAATTTCtgtatttttaatcaaacttattCTTCTTTCAGGGTTTGT
TATACCACGAGAGAGGAGACTGTGCACTAGCTGAAAAGATTCTCAGAGCA
TGTATTCTGTATGATACAAGCAATCATACTGCTTGGTAAGAAGAAAATTC
ACTCTCCGACTGCTAatgagcttttccagaaaaatttgaatatgggggat
ttaggatataacattttttggaaatttaccgcCCGGACATAGTGGccttt
gaccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNcccccccccccccggacagcaggtctaaccccctgGGCAa
gcaaacaaaggaaaattacCGCCAAACCTGCGCTTAcggccaaatatttt
aggtttttagttttaaattttcagtttgatcGACAATTTGGTTCGGAAAA
TTTCCGAAGGAATCGAAAGATTTCTAAAAAGGACTTTGACCGCTAATAAC
ATGTTTGTTCGAAAAACAATGGCCAAGTTCCGGTCTTTAGCCGGTAAATC
GtaaaataatgtttaaaaaaattcgaaCTATCGTATACAGGATGTCCGGC
GGCAAATATTGAGACAAAGTTCTTTTCAGTCTTTCAATCATTCATTATCC
ATTACAAGTTCTATAATACCCCTTAAAGtataaacaaactttttatagaa
tttaTTATAAGATTCATTGGAGATATACATTTTTCTTTTAGGAACGATCT
GGGTATTGTATTGGAGTCAACTGGTCGGTTTGATGAGTCAGCAGATTGTT
TCCTTACTGCTCTTAGACTGGAAGGTTCGGCTCCAATATCCAGTTTTACA
TCAATACCGCGCGCTTTTAGAGCATTTGACACATCGTAAGGGATGGAAAA
TAGGAATATAGTTTGAAATGTCTTCACATggtgctttttattagtttacA
AACATTTCCCAGTTTGTCCGAGAAAAAACGAAGCTTtaacccgcaaaatc
gagggcGGTAATGCTGATTTATCGTCGTCCTCAGCCGGCCAGTCGGTCGA
TCAGGGTCTAGACAAATCGAAGAATGACACAGTTTCTGCCATAGGAAAAA
AAGCATACATACAGCTCACTATTGTTTGACATAGCAACTTATTGTTGGAa
ctgaaatttttaatttaattgtATTTTTTAAGTGGTAGTAGTACTTTCGG
GCCAATTGGACGTTATTTCTCATTTGTGAATCTTGCCCAAAGAATGATGC
GATGGGAGCTTtgtgctcatcctctagcgaaaagagtttctcataggaag
tatatctatagaggtctgcgattcagacaaGGAACTTTGTTAACTAGACT
TACCAGTGCTCTAGActcatttgtttaaaaaattgacaaagttGTCATAG
TTACCTTGCTGATCTTGGGTTCTCGGGCATGACGGTaaaggtttttcttt
ttgttcagtGTACGgttttttatgatttattttttaaatgaattggATTT
GTATAAATTTATTGATTTGTAAAGATATTTaatttataaaacaaatttaa
c

Coding sequence (CDS) from alignment at scaffold_272:119020..124670+

>TCONS_00056310 ID=TCONS_00056310|Name=TCONS_00056310|organism=Clytia hemisphaerica|type=CDS|length=4356bp|location=Sequence derived from alignment at scaffold_272:119020..124670+ (Clytia hemisphaerica)
AGGAGAGAAGAGCAAAACACAGAGGAGACGCTTGCTAAAAGTCCCTCCTT
CTCCATGACGAAAAGTTTGAACGACTCCAAACTCTTAGATGCAACTGCCA
GCATCAAGAAAATGGCTCTCGTTGATACTTCTAGTTTGGATGACGATGGC
ACGGGGAGTATTGCAGCCTCTGTGCGTATTGAAAAAGCTTTATCAGAAGC
GCCTAGTGGAACTCTAACCACCACGCATCAAGTTGGCATGACACGCACAA
TCGCTATGTTATCCAAATTGTGGCTTATCACTGcgGAATGTTTCATCAAT
CTGGAGGATGCGACGCAAGCCGGTGGATGTATCTTGGAAGCGTCTTCAAT
TTTCCCTCTCTCTCCTGATGTTCTCTATATGAGAGGCCGTTTAAATGAAC
TCCAAGAGAACACTTTGGAAGCCATCGCTTGTTATGAAAGCGCGTTATCC
ATACATCCACATCACAAAGCTGCTCGCCAAAGAGTGGGTTTGTTATACCA
CGAGAGAGGAGACTGTGCACTAGCTGAAAAGATTCTCAGAGCATGTATTC
TGTATGATACAAGCAATCATACTGCTTGGAACGATCTGGGTATTGTATTG
GAGTCAACTGGTCGGTTTGATGAGTCAGCAGATTGTTTCCTTACTGCTCT
TAGACTGGAAGGTTCGGCTCCAATATCCAGTTTTACATCAATACCGCGCG
CTTTTAGAGCATTTGACACATCGTAAAGGAGAGAAGAGCAAAACACAGAG
GAGACGCTTGCTAAAAGTCCCTCCTTCTCCATGACGAAAAGTTTGAACGA
CTCCAAACTCTTAGATGCAACTGCCAGCATCAAGAAAATGGCTCTCGTTG
ATACTTCTAGTTTGGATGACGATGGCACGGGGAGTATTGCAGCCTCTGTG
CGTATTGAAAAAGCTTTATCAGAAGCGCCTAGTGGAACTCTAACCACCAC
GCATCAAGTTGGCATGACACGCACAATCGCTATGTTATCCAAATTGTGGC
TTATCACTGcgGAATGTTTCATCAATCTGGAGGATGCGACGCAAGCCGGT
GGATGTATCTTGGAAGCGTCTTCAATTTTCCCTCTCTCTCCTGATGTTCT
CTATATGAGAGGCCGTTTAAATGAACTCCAAGAGAACACTTTGGAAGCCA
TCGCTTGTTATGAAAGCGCGTTATCCATACATCCACATCACAAAGCTGCT
CGCCAAAGAGTGGGTTTGTTATACCACGAGAGAGGAGACTGTGCACTAGC
TGAAAAGATTCTCAGAGCATGTATTCTGTATGATACAAGCAATCATACTG
CTTGGAACGATCTGGGTATTGTATTGGAGTCAACTGGTCGGTTTGATGAG
TCAGCAGATTGTTTCCTTACTGCTCTTAGACTGGAAGGTTCGGCTCCAAT
ATCCAGTTTTACATCAATACCGCGCGCTTTTAGAGCATTTGACACATCGT
AAAGGAGAGAAGAGCAAAACACAGAGGAGACGCTTGCTAAAAGTCCCTCC
TTCTCCATGACGAAAAGTTTGAACGACTCCAAACTCTTAGATGCAACTGC
CAGCATCAAGAAAATGGCTCTCGTTGATACTTCTAGTTTGGATGACGATG
GCACGGGGAGTATTGCAGCCTCTGTGCGTATTGAAAAAGCTTTATCAGAA
GCGCCTAGTGGAACTCTAACCACCACGCATCAAGTTGGCATGACACGCAC
AATCGCTATGTTATCCAAATTGTGGCTTATCACTGcgGAATGTTTCATCA
ATCTGGAGGATGCGACGCAAGCCGGTGGATGTATCTTGGAAGCGTCTTCA
ATTTTCCCTCTCTCTCCTGATGTTCTCTATATGAGAGGCCGTTTAAATGA
ACTCCAAGAGAACACTTTGGAAGCCATCGCTTGTTATGAAAGCGCGTTAT
CCATACATCCACATCACAAAGCTGCTCGCCAAAGAGTGGGTTTGTTATAC
CACGAGAGAGGAGACTGTGCACTAGCTGAAAAGATTCTCAGAGCATGTAT
TCTGTATGATACAAGCAATCATACTGCTTGGAACGATCTGGGTATTGTAT
TGGAGTCAACTGGTCGGTTTGATGAGTCAGCAGATTGTTTCCTTACTGCT
CTTAGACTGGAAGGTTCGGCTCCAATATCCAGTTTTACATCAATACCGCG
CGCTTTTAGAGCATTTGACACATCGTAAAGGAGAGAAGAGCAAAACACAG
AGGAGACGCTTGCTAAAAGTCCCTCCTTCTCCATGACGAAAAGTTTGAAC
GACTCCAAACTCTTAGATGCAACTGCCAGCATCAAGAAAATGGCTCTCGT
TGATACTTCTAGTTTGGATGACGATGGCACGGGGAGTATTGCAGCCTCTG
TGCGTATTGAAAAAGCTTTATCAGAAGCGCCTAGTGGAACTCTAACCACC
ACGCATCAAGTTGGCATGACACGCACAATCGCTATGTTATCCAAATTGTG
GCTTATCACTGcgGAATGTTTCATCAATCTGGAGGATGCGACGCAAGCCG
GTGGATGTATCTTGGAAGCGTCTTCAATTTTCCCTCTCTCTCCTGATGTT
CTCTATATGAGAGGCCGTTTAAATGAACTCCAAGAGAACACTTTGGAAGC
CATCGCTTGTTATGAAAGCGCGTTATCCATACATCCACATCACAAAGCTG
CTCGCCAAAGAGTGGGTTTGTTATACCACGAGAGAGGAGACTGTGCACTA
GCTGAAAAGATTCTCAGAGCATGTATTCTGTATGATACAAGCAATCATAC
TGCTTGGAACGATCTGGGTATTGTATTGGAGTCAACTGGTCGGTTTGATG
AGTCAGCAGATTGTTTCCTTACTGCTCTTAGACTGGAAGGTTCGGCTCCA
ATATCCAGTTTTACATCAATACCGCGCGCTTTTAGAGCATTTGACACATC
GTAAAGGAGAGAAGAGCAAAACACAGAGGAGACGCTTGCTAAAAGTCCCT
CCTTCTCCATGACGAAAAGTTTGAACGACTCCAAACTCTTAGATGCAACT
GCCAGCATCAAGAAAATGGCTCTCGTTGATACTTCTAGTTTGGATGACGA
TGGCACGGGGAGTATTGCAGCCTCTGTGCGTATTGAAAAAGCTTTATCAG
AAGCGCCTAGTGGAACTCTAACCACCACGCATCAAGTTGGCATGACACGC
ACAATCGCTATGTTATCCAAATTGTGGCTTATCACTGcgGAATGTTTCAT
CAATCTGGAGGATGCGACGCAAGCCGGTGGATGTATCTTGGAAGCGTCTT
CAATTTTCCCTCTCTCTCCTGATGTTCTCTATATGAGAGGCCGTTTAAAT
GAACTCCAAGAGAACACTTTGGAAGCCATCGCTTGTTATGAAAGCGCGTT
ATCCATACATCCACATCACAAAGCTGCTCGCCAAAGAGTGGGTTTGTTAT
ACCACGAGAGAGGAGACTGTGCACTAGCTGAAAAGATTCTCAGAGCATGT
ATTCTGTATGATACAAGCAATCATACTGCTTGGAACGATCTGGGTATTGT
ATTGGAGTCAACTGGTCGGTTTGATGAGTCAGCAGATTGTTTCCTTACTG
CTCTTAGACTGGAAGGTTCGGCTCCAATATCCAGTTTTACATCAATACCG
CGCGCTTTTAGAGCATTTGACACATCGTAAAGGAGAGAAGAGCAAAACAC
AGAGGAGACGCTTGCTAAAAGTCCCTCCTTCTCCATGACGAAAAGTTTGA
ACGACTCCAAACTCTTAGATGCAACTGCCAGCATCAAGAAAATGGCTCTC
GTTGATACTTCTAGTTTGGATGACGATGGCACGGGGAGTATTGCAGCCTC
TGTGCGTATTGAAAAAGCTTTATCAGAAGCGCCTAGTGGAACTCTAACCA
CCACGCATCAAGTTGGCATGACACGCACAATCGCTATGTTATCCAAATTG
TGGCTTATCACTGcgGAATGTTTCATCAATCTGGAGGATGCGACGCAAGC
CGGTGGATGTATCTTGGAAGCGTCTTCAATTTTCCCTCTCTCTCCTGATG
TTCTCTATATGAGAGGCCGTTTAAATGAACTCCAAGAGAACACTTTGGAA
GCCATCGCTTGTTATGAAAGCGCGTTATCCATACATCCACATCACAAAGC
TGCTCGCCAAAGAGTGGGTTTGTTATACCACGAGAGAGGAGACTGTGCAC
TAGCTGAAAAGATTCTCAGAGCATGTATTCTGTATGATACAAGCAATCAT
ACTGCTTGGAACGATCTGGGTATTGTATTGGAGTCAACTGGTCGGTTTGA
TGAGTCAGCAGATTGTTTCCTTACTGCTCTTAGACTGGAAGGTTCGGCTC
CAATATCCAGTTTTACATCAATACCGCGCGCTTTTAGAGCATTTGACACA
TCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035474XLOC_035474Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056310-proteinTCONS_00056310-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056310-exon-scaffold_272-1491911889:119020..119163TCONS_00056310-exon-scaffold_272-1491911889:119020..119163Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1510915933:119020..119163TCONS_00056310-exon-scaffold_272-1510915933:119020..119163Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1575043694:119020..119163TCONS_00056310-exon-scaffold_272-1575043694:119020..119163Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1491911889:119529..119669TCONS_00056310-exon-scaffold_272-1491911889:119529..119669Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1510915933:119529..119669TCONS_00056310-exon-scaffold_272-1510915933:119529..119669Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1575043694:119529..119669TCONS_00056310-exon-scaffold_272-1575043694:119529..119669Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1491911889:120396..120493TCONS_00056310-exon-scaffold_272-1491911889:120396..120493Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1510915933:120396..120493TCONS_00056310-exon-scaffold_272-1510915933:120396..120493Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1575043694:120396..120493TCONS_00056310-exon-scaffold_272-1575043694:120396..120493Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1491911889:121843..121947TCONS_00056310-exon-scaffold_272-1491911889:121843..121947Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1510915933:121843..121947TCONS_00056310-exon-scaffold_272-1510915933:121843..121947Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1575043694:121843..121947TCONS_00056310-exon-scaffold_272-1575043694:121843..121947Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1491911889:122163..122254TCONS_00056310-exon-scaffold_272-1491911889:122163..122254Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1510915933:122163..122254TCONS_00056310-exon-scaffold_272-1510915933:122163..122254Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1575043694:122163..122254TCONS_00056310-exon-scaffold_272-1575043694:122163..122254Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1491911889:123861..124670TCONS_00056310-exon-scaffold_272-1491911889:123861..124670Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1510915933:123861..124670TCONS_00056310-exon-scaffold_272-1510915933:123861..124670Clytia hemisphaericaexon
TCONS_00056310-exon-scaffold_272-1575043694:123861..124670TCONS_00056310-exon-scaffold_272-1575043694:123861..124670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:119020..124670 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2099	9.87213	4.83624	3.58958	14.473	10.6361	15.1783	16.1623	17.5176	19.5662	15.4418	14.1048	12.4432	12.2208	12.9811	11.9537	16.733	14.4464	12.7551	17.0765	12.1291	10.9466	11.0564	10.6062	10.2242	13.126	12.6046	10.1988	9.63599	7.26121
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00056310 vs. Swiss-Prot (Human)
Match: TTC7B (Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.377e-36
Identity = 74/180 (41.11%), Postives = 110/180 (61.11%), Query Frame = 3 
Query:  168 ASVRIEKALSEAPSGTLTTTHQVGMTRTIAMLSKLWLITAECFINLEDATQAGGCILEASSIFPLSPDVLYMRGRLNELQENTLEAIACYESALSIHPHHKAARQRVGLLYHERGDCALAEKILRACILYDTSNHTAWNDLGIVLESTGRFDESADCFLTALRLEGSAPISSFTSIPRAF 707
            A+ R+E+ALSE  S   ++  + G       L+++WL  AE +I +    +A  C  EA+++FP+S +VLYMRG++ EL+ +  EA   YE AL+I P H  + QR+ L+ H+ G  +LAEKILR  +  +++ H  WN LG VL++ G    + +CFLTAL LE S+P   FT IPR  
Sbjct:  664 AASRVEQALSEVASSLQSSAPKQGPLHPWMTLAQIWLHAAEVYIGIGKPAEATACTQEAANLFPMSHNVLYMRGQIAELRGSMDEARRWYEEALAISPTHVKSMQRLALILHQLGRYSLAEKILRDAVQVNSTAHEVWNGLGEVLQAQGNDAAATECFLTALELEASSPAVPFTIIPRVL 843
The following BLAST results are available for this feature:
BLAST of TCONS_00056310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC7B1.377e-3641.11Tetratricopeptide repeat protein 7B OS=Homo sapien... [more]
back to top