TCONS_00056311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056311
Unique NameTCONS_00056311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056311 ID=TCONS_00056311|Name=TCONS_00056311|organism=Clytia hemisphaerica|type=transcript|length=1774bp
ttaaaCCGAGAGTTTTATATTGTTATCTACTctctatgtttttcttttat
tgttgttcatagtttttctttctcatgaaatgaatttcgaatgcaattaa
aacgttcgatgcaaaaaaagatgtaagaaaatacattaaaatcaattttg
taaacattgacgcggcattgaagagtgtgattgatctctacaggatgcaa
ttaacgattaattgctctctttgaaggagcgccaaatgagaaaaaatagc
tcatcgtgcgattagctTCATTATACAATGTTTGATAATCACGCCGcatt
caaattattttactCTCCAACGTTGTTCAAATAGGGGATATATCTGTTTT
CCATAGCTAGAACTTGCCCTTGGATTATGGGAGTTGGGTTGAGGATTATC
AGATTTTACAAATAGCAGGAGGTTGGGGTTGATAAGAGATATAAGATGGG
GGTGACCCTATGTAGTTAGTGTTGGCCTTTTTCAGGTGGGACTTGGAGGG
ATGTTTTTTATTATGTTCACATTTCTACTTTTGGGAATCCCGTCAATATT
CTATCTATTTGGAGTGGCTTTGGAAACGATAAACGGTACAACGGACTAGA
CaattttacacattttttatcaCGTATTTCTTTGGTATCAGGGTAACTGG
ACAATATGAagtgtttttgaattttctatCTTGCAAATAATAAAATACCT
CCCCTTAGAATCCGCCCGTCATGTACACAGAAGATTACCAAGTGGCAGCC
GTCAAAAGTTATTTCCCACTTTTCGATGAATACAAGAAAAGCTATTTCGT
TGGTGAAATGATCTGGAATTTCGCTGACTTTGCAACTGCTCAAGGAACTA
CACGAGTAGCGGGCAACAAGAAAGGTCTATTTACACGTAGTCGCCAACCC
AAACGTATTGCATACGTTATCCGTGAACGTTACCGTAAGATGCCGTCATT
GAATCTTGTTCACACCACGGATGAGGAAAAGAAGCGTACCACGGCTAATA
CGAAGTCGCTGGAGGAGTACGATGATTTGACGGATTATAACGGCGAGACG
TACTACGACCAAGATTTTACGAACGGAGGTGTGTCGGACGATGGAGTTGA
TATTATTCCTGCTCTCTGAATGTTGTGTTGTGGATCAAGTGTCACTCTTC
CTGAAACTCTTCAACCGGTCTAGAATCACTTTGAATCTAGTAGAAGTTCG
TAATTATTTGCACTATAAGTGATAATCTTCCCCGGCAAACAAAAACTTAT
ATTCTTAAACATGGCAAGaggaaatttattgaaaattcatcAATTTTCGT
GATGAAGGTGCCTAAATTAGGCCAAATTTTATTCGGATCTTCAATCTTTG
ATCCGCCTCAGAGGTTAAGCCTATTTTGCTTATTGAGCTATATTTTAATG
TAGCTTTTAGTAGCAGCTATTCTTATTTATATTTAATTTGTTTTACAAAT
TGTAAATTGCAGGTAGATGGTTTAAGATTtgtaattaaaattttcaataa
aatataaagtacaaGCAGCTCCTTTTAAAGTAAGCTTTGCTAAacgatga
aataaaaatatattaggACTTATTagattggattttatctttgtACATAG
AATTAGAATTAAAAATCATTTAtggagattttttaaaagaaaaattgaaa
ttttattagCAATTAAAGATttatatgaaaattttagcaatatggaaatt
ttttaaatatagaaaacttgaaattttagtAGCAATTAATCTATTTATCT
ACAATAAAagatataaaattttaa
Run BLAST on NCBI

protein sequence of TCONS_00056311-protein

>TCONS_00056311-protein ID=TCONS_00056311-protein|Name=TCONS_00056311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MYTEDYQVAAVKSYFPLFDEYKKSYFVGEMIWNFADFATAQGTTRVAGNK
KGLFTRSRQPKRIAYVIRERYRKMPSLNLVHTTDEEKKRTTANTKSLEEY
DDLTDYNGETYYDQDFTNGGVSDDGVDIIPAL
Run BLAST on NCBI

transcript from alignment at scaffold_272:164595..166701+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056311 ID=TCONS_00056311|Name=TCONS_00056311|organism=Clytia hemisphaerica|type=transcript|length=2107bp|location=Sequence derived from alignment at scaffold_272:164595..166701+ (Clytia hemisphaerica)
ttaaaCCGAGAGTTTTATATTGTTATCTACTctctatgtttttcttttat
tgttgttcatagtttttctttctcatgaaatgaatttcgaatgcaattaa
aacgttcgatgcaaaaaaagatgtaagaaaatacattaaaatcaattttg
taaacattgacgcggcattgaagagtgtgattgatctctacaggatgcaa
ttaacgattaattgctctctttgaaggagcgccaaatgagaaaaaatagc
tcatcgtgcgattagctTCATTATACAATGTTTGATAATCACGCCGcatt
caaattattttactCTCCAACGTTGTTCAAATAGGGGATATATCTGTTTT
CCATAGCTAGAACTTGCCCTTGGATTATGGGAGTTGGGTTGAGGATTATC
AGATTTTACAAATAGCAGGAGGTTGGGGTTGATAAGAGATATAAGATGGG
GGTGACCCTATGTAGTTAGTGTTGGCCTTTTTCAGGTGGGACTTGGAGGG
ATGTTTTTTATTATGTTCACATTTCTACTTTTGGGAATCCCGTCAATATT
CTATCTATTTGGAGTGGCTTTGGAAACGATAAACGGTACAACGGACTAGA
CaattttacacattttttatcaCGTATTTCTTTGGTATCAGGGTAACTGG
ACAATATGAagtgtttttgaattttctatCTTGCAAATAATAAAATACCT
CCCCTTAGAATCCGCCCGTCATGTACACAGAAGATTACCAAGTGGCAGCC
GTCAAAAGTTATTTCCCACTTTTCGATGAATACAAGAAAAGCTATTTCGT
TGGTGAAATGATCTGGAATTTCGCTGACTTTGCAACTGCTCAAGGTTTGT
ATGTTTGTAGTATGATGAAGACAAAGGAAACAATTGAAATATTCACCCAA
TCTTTTTCATTAAATGCATTGTAAAAGCCTAGCTTTTCAGAGTACTTGAT
AAGCTTgactgttttaattttttttctcttgggTATTTTTTAATTCTGTT
TGACAATTTTTCAAACCTTCCCTTTTTACATGGACTTGTCAAGCCCAAGC
AAAGCTAAAGGAAATATTACAAAGCGATCAAATGGTCGCATAACGAGATC
ACATTGAATTTTTGTGTGGTAATTTACCATCAAGCGGAACTACTTTCATC
ATAACTCTACAATATATTGTTTTGCAGGAACTACACGAGTAGCGGGCAAC
AAGAAAGGTCTATTTACACGTAGTCGCCAACCCAAACGTATTGCATACGT
TATCCGTGAACGTTACCGTAAGATGCCGTCATTGAATCTTGTTCACACCA
CGGATGAGGAAAAGAAGCGTACCACGGCTAATACGAAGTCGCTGGAGGAG
TACGATGATTTGACGGATTATAACGGCGAGACGTACTACGACCAAGATTT
TACGAACGGAGGTGTGTCGGACGATGGAGTTGATATTATTCCTGCTCTCT
GAATGTTGTGTTGTGGATCAAGTGTCACTCTTCCTGAAACTCTTCAACCG
GTCTAGAATCACTTTGAATCTAGTAGAAGTTCGTAATTATTTGCACTATA
AGTGATAATCTTCCCCGGCAAACAAAAACTTATATTCTTAAACATGGCAA
GaggaaatttattgaaaattcatcAATTTTCGTGATGAAGGTGCCTAAAT
TAGGCCAAATTTTATTCGGATCTTCAATCTTTGATCCGCCTCAGAGGTTA
AGCCTATTTTGCTTATTGAGCTATATTTTAATGTAGCTTTTAGTAGCAGC
TATTCTTATTTATATTTAATTTGTTTTACAAATTGTAAATTGCAGGTAGA
TGGTTTAAGATTtgtaattaaaattttcaataaaatataaagtacaaGCA
GCTCCTTTTAAAGTAAGCTTTGCTAAacgatgaaataaaaatatattagg
ACTTATTagattggattttatctttgtACATAGAATTAGAATTAAAAATC
ATTTAtggagattttttaaaagaaaaattgaaattttattagCAATTAAA
GATttatatgaaaattttagcaatatggaaattttttaaatatagaaaac
ttgaaattttagtAGCAATTAATCTATTTATCTACAATAAAagatataaa
attttaa

Coding sequence (CDS) from alignment at scaffold_272:164595..166701+

>TCONS_00056311 ID=TCONS_00056311|Name=TCONS_00056311|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_272:164595..166701+ (Clytia hemisphaerica)
ATGTACACAGAAGATTACCAAGTGGCAGCCGTCAAAAGTTATTTCCCACT
TTTCGATGAATACAAGAAAAGCTATTTCGTTGGTGAAATGATCTGGAATT
TCGCTGACTTTGCAACTGCTCAAGGAACTACACGAGTAGCGGGCAACAAG
AAAGGTCTATTTACACGTAGTCGCCAACCCAAACGTATTGCATACGTTAT
CCGTGAACGTTACCGTAAGATGCCGTCATTGAATCTTGTTCACACCACGG
ATGAGGAAAAGAAGCGTACCACGGCTAATACGAAGTCGCTGGAGGAGTAC
GATGATTTGACGGATTATAACGGCGAGACGTACTACGACCAAGATTTTAC
GAACGGAGGTGTGTCGGACGATGGAGTTGATATTATTCCTGCTCTCTGAA
TGTACACAGAAGATTACCAAGTGGCAGCCGTCAAAAGTTATTTCCCACTT
TTCGATGAATACAAGAAAAGCTATTTCGTTGGTGAAATGATCTGGAATTT
CGCTGACTTTGCAACTGCTCAAGGAACTACACGAGTAGCGGGCAACAAGA
AAGGTCTATTTACACGTAGTCGCCAACCCAAACGTATTGCATACGTTATC
CGTGAACGTTACCGTAAGATGCCGTCATTGAATCTTGTTCACACCACGGA
TGAGGAAAAGAAGCGTACCACGGCTAATACGAAGTCGCTGGAGGAGTACG
ATGATTTGACGGATTATAACGGCGAGACGTACTACGACCAAGATTTTACG
AACGGAGGTGTGTCGGACGATGGAGTTGATATTATTCCTGCTCTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035475XLOC_035475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056311-proteinTCONS_00056311-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056311-exon-scaffold_272-1491911889:164595..165438TCONS_00056311-exon-scaffold_272-1491911889:164595..165438Clytia hemisphaericaexon
TCONS_00056311-exon-scaffold_272-1510915933:164595..165438TCONS_00056311-exon-scaffold_272-1510915933:164595..165438Clytia hemisphaericaexon
TCONS_00056311-exon-scaffold_272-1575043694:164595..165438TCONS_00056311-exon-scaffold_272-1575043694:164595..165438Clytia hemisphaericaexon
TCONS_00056311-exon-scaffold_272-1491911889:165772..166701TCONS_00056311-exon-scaffold_272-1491911889:165772..166701Clytia hemisphaericaexon
TCONS_00056311-exon-scaffold_272-1510915933:165772..166701TCONS_00056311-exon-scaffold_272-1510915933:165772..166701Clytia hemisphaericaexon
TCONS_00056311-exon-scaffold_272-1575043694:165772..166701TCONS_00056311-exon-scaffold_272-1575043694:165772..166701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:164595..166701 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40478	1.56769	1.20571	1.03394	15.0902	11.5597	15.9229	15.8612	8.44929	9.78971	10.1708	6.25001	10.374	8.41288	9.64529	13.6612	14.1377	14.0555	7.44748	6.76223	10.8503	11.1642	12.9234	13.0318	12.0966	13.1397	47.8562	28.8777	14.3103	11.5032
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006103Glyco_hydro_2_cat
IPR017853Glycoside_hydrolase_SF
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Blast
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BLAST of TCONS_00056311 vs. Swiss-Prot (Human)
Match: BGLR (Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 6.408e-22
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:  709 NPPVMYTEDYQVAAVKSYFPLFDEYKKSYFVGEMIWNFADFATAQGTTRVAGNKKGLFTRSRQPKRIAYVIRERYRKM 942
            +PP+M+TE+YQ + ++ Y    D+ ++ Y VGE+IWNFADF T Q  TRV GNKKG+FTR RQPK  A+++RERY K+
Sbjct:  552 DPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKI 629
The following BLAST results are available for this feature:
BLAST of TCONS_00056311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BGLR6.408e-2255.13Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV... [more]
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