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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056312 ID=TCONS_00056312|Name=TCONS_00056312|organism=Clytia hemisphaerica|type=transcript|length=1103bp
caaaaaaatacaaagaaaaaaataaattaacaaaaaaatacaacGACATG
ACGAAAGAACATCATTAAAATTATTGTGAAAGGAAGATGCTAaatatgac
ttgaaaaatattgaagcgACAGAGGACGGAACACAGCACTGGTTCAAact
tgttttgaaatatttattgttTGCACTCAATGTTGGTCTTGTTAttactg
atgacgtcataatattTGTTGCTTGCCATGGAGAAAGAGATATTTGCGGT
ATCGGACGTATACGAGCATGCAGCTTCCATTGGGAAAGACATCGAACAGA
TAGTCCAAGAATATGGAAAAGAAGCTATCGAAGACATCATGCCGAAGATT
GTATACGTGTTGGAACAATTAGAAACGCTAGCAGAACGTCACCAGGACGA
TCAAGAGAAACTAGCTGGTCTGATGATCGAACGTGAAAAATTCATGATCC
ATGCCAACAGAGATAAAGCTATACAACGGCAGCTTGAAGAGAAACTAGCA
TATATGGAAGGACTCGTCACAAAGGACAAAAAAGATATGGAACAGAAGCT
AAAACGGCTAGAACACGAAAACGACAGTCTAGTTGAAGAACTTGAAAAAC
ACGGTGACGGAGAATCAATCAAATCATCCAAGGAGAAGAACAAAAGTGGT
ATTAAAACGTATTCTTTTACCTTTTATGGAGTTCTCTCATTCTCCATCTC
ATTGCTTATTTCCATCTCGTTTACTTTCTATAACGGTACGTCGGACCTTA
TATCGAATATTTGGTCTTTGCCATGATAATATAGATTCTGATACTAGAAT
AACGAGAAAAATGACAATAAAATTACATTTAACTAAAACACCGTACAAAG
TACACTGAAATCGACGAATTACGCGTTCAACATAACCTGATTGACCAAAT
TGACTaatgttaatatttttttgtttattatatCATTTgggcaagttcat
ttttatgaaatattattCTCTACGTACATATAATGCAGATACCAAAAACC
TTCTTACACAAGTTATTAGGGCCGACAATGAACCGATGTTTTATATTTTG
CGCAAGGATCAGCATGTAAAAAATGGAAATACTGTACTTCTcctgtatac
acg Run BLAST on NCBI transcript from alignment at scaffold_272:167351..169511+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056312 ID=TCONS_00056312|Name=TCONS_00056312|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at scaffold_272:167351..169511+ (Clytia hemisphaerica)
caaaaaaatacaaagaaaaaaataaattaacaaaaaaatacaacGACATG
ACGAAAGAACATCATTAAAATTATTGTGAAAGGAAGATGCTAaatatgac
ttgaaaaatattgaagcgACAGAGGACGGAACACAGCACTGGTTCAAact
tgttttgaaatatttattgttTGCACTCAATGTTGGTCTTGTTAttactg
atgacgtcataatattTGTTGCTTGCCATGGAGAAAGAGATATTTGCGGT
ATCGGACGTATACGAGCATGCAGCTTCCATTGGGAAAGACATCGAACAGA
TAGTCCAAGAATATGGAAAAGAAGCTATCGAAGGTGTGTATTCCACAAAC
TCGAATCCAGTCCTAACAATTTCtatatatttctattattttggAAGAAT
TTAGTGGCTTATAGGCTACTTGGAATATATTCGATCCTAGCTTGATGGTC
TAATCTTAAAGCTAAAAGTTAAAATTGCACTTAAAAATAAGGTGTGGTTT
TTGAAGTCTTACAGGGAATTCCCTTTGTTTCAAATATTATCACCATCATT
GTAGGTTTCTTTTTAGTCTTCGAGCAGTAACTAAGACACGTTCGATACAT
AAACCATTTAAAATCCTTTCTTAATTTCACAATAATATTGCCAAATAATA
TCATAATAACATAAACATAAAGTCTAACTTACACTTACTGTATTTCTACA
TTCAACTATACTTATTATTATCAGATACGGGAAAACTAATATTCTTTTCA
CTCCATATATAGACATCATGCCGAAGATTGTATACGTGTTGGAACAATTA
GAAACGCTAGCAGAACGTCACCAGGACGATCAAGAGAAACTAGCTGGTCT
GATGATCGAACGTGAAAAATTCATGATCCATGCCAACAGAGATAAAGCTA
TACAACGGCAGCTTGAAGAGGTAAGCTGTCTTTTCTAGTGTATAACGATA
AATAAAGTTTCATTAGTTTGGACGATATATATGCATAAAATACACAACCC
TAGAATAGGccatacccagctggcacacaacgttgtttcaacgtttattt
aacgttcacaacgtccatataacgttagatgaacgttgaaataacgttgt
gcaCCGGCTGGGTATTCGCTATCTTTATTCAGTGTCACTTTAAAAATCCT
TGTCTATTACCCTGACGGCAAAACGGTGCTTGGTCTTTTTAgtaactaat
tactccagcatAAATCATTTTAATGATAACATCATATGATTGATTTGTCT
TCTGCAACAGAGCTGTCACCCAGGGACATGATAATTTATCCCCTTTCTAC
TGGCTGAAGAAAAGGTATACTGGAGTAAATTGTCATTCAATAGACCGTCA
CGTTCTCCTAAAcgactaccttatcggggaaaacttcgtcggggaaaagt
gacgaaattttggctaagtgacgaatatttttccccgacgaaaattttcc
ccagccttAATGCATTTACCAACAAcataccagcaagtgacgaatatttt
tcctgACGAAGTTTTCCTCGATAAGGTattttgtttttcgattttATAGA
AACTAGCATATATGGAAGGACTCGTCACAAAGGACAAAAAAGATATGGAA
CAGAAGCTAAAACGGCTAGAACACGAAAACGACAGTCTAGTTGAAGAACT
TGAAAAACACGGTGACGGAGAATCAATCAAATCATCCAAGGAGAAGAACA
AAAGTGGTATTAAAACGTATTCTTTTACCTTTTATGGAGTTCTCTCATTC
TCCATCTCATTGCTTATTTCCATCTCGTTTACTTTCTATAACGGTACGTC
GGACCTTATATCGAATATTTGGTCTTTGCCATGATAATATAGATTCTGAT
ACTAGAATAACGAGAAAAATGACAATAAAATTACATTTAACTAAAACACC
GTACAAAGTACACTGAAATCGACGAATTACGCGTTCAACATAACCTGATT
GACCAAATTGACTaatgttaatatttttttgtttattatatCATTTgggc
aagttcatttttatgaaatattattCTCTACGTACATATAATGCAGATAC
CAAAAACCTTCTTACACAAGTTATTAGGGCCGACAATGAACCGATGTTTT
ATATTTTGCGCAAGGATCAGCATGTAAAAAATGGAAATACTGTACTTCTc
ctgtatacacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056312-exon-scaffold_272-1491911889:167351..167683 | TCONS_00056312-exon-scaffold_272-1491911889:167351..167683 | Clytia hemisphaerica | exon |
| TCONS_00056312-exon-scaffold_272-1510915933:167351..167683 | TCONS_00056312-exon-scaffold_272-1510915933:167351..167683 | Clytia hemisphaerica | exon |
| TCONS_00056312-exon-scaffold_272-1575043694:167351..167683 | TCONS_00056312-exon-scaffold_272-1575043694:167351..167683 | Clytia hemisphaerica | exon |
| TCONS_00056312-exon-scaffold_272-1491911889:168113..168270 | TCONS_00056312-exon-scaffold_272-1491911889:168113..168270 | Clytia hemisphaerica | exon |
| TCONS_00056312-exon-scaffold_272-1510915933:168113..168270 | TCONS_00056312-exon-scaffold_272-1510915933:168113..168270 | Clytia hemisphaerica | exon |
| TCONS_00056312-exon-scaffold_272-1575043694:168113..168270 | TCONS_00056312-exon-scaffold_272-1575043694:168113..168270 | Clytia hemisphaerica | exon |
| TCONS_00056312-exon-scaffold_272-1491911889:168900..169511 | TCONS_00056312-exon-scaffold_272-1491911889:168900..169511 | Clytia hemisphaerica | exon |
| TCONS_00056312-exon-scaffold_272-1510915933:168900..169511 | TCONS_00056312-exon-scaffold_272-1510915933:168900..169511 | Clytia hemisphaerica | exon |
| TCONS_00056312-exon-scaffold_272-1575043694:168900..169511 | TCONS_00056312-exon-scaffold_272-1575043694:168900..169511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:167351..169511 + |
Blast
The following BLAST results are available for this feature:
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