TCONS_00056314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056314
Unique NameTCONS_00056314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056314 ID=TCONS_00056314|Name=TCONS_00056314|organism=Clytia hemisphaerica|type=transcript|length=2300bp
aaaagatgtagaaaaagaatccccttgatgaaaatcatgtgtttgatttg
ccgagttaaaaaataaatgacagaaattgaagcttgcaacagatttacac
tcaGTTACACTGGAAAtgctttggtacaacactgacttatcacatctgac
ttatcacATTTCGCTAAATGCTCAGAGCGCGACGGcccattttccctttc
ctatctttcaccttacctgtttattctactttctgagacttagtttctct
cTGAGCAATCAGCGaaatctgacttatcgcttgagccgccatcttgaaac
accacattatgatctgtaaaaacgacgctaaaagtacccaaaaagttaac
ccaatcggaagaaagtttagaaatcaaagtgagatcgggaaatcggattt
ttttttttgccgtctcatggaactggaaaattttacctatttgaatgctc
agcttaggctgaccaaaaacttttacttttaATTTGTCCTATCTACTTTA
ACAGTTCATCTTTTTGGCCATTGCTTATATGTATTAGATCTTTACCTTTT
AGCTTCAAGAACAAGTCACGCGTCTGGGTGACATCAACGAGCGTTTACGA
TCCGATTCGAGTGTCTTATCGAACGAATCTATAACATCCAGCGAATCGAT
TCACAACGAGAAGGCTGATCTTAACACTTCGACTGCATCTCTATTAGATG
AACTACGAATGGAGGATGCGAATTATAACGAATATGAAGAGGAAGAAACT
ATGGAAAATTCGAGTTTCGCAGTCTTAACAACGTCTATATGTCTAACAAG
TGATGAAACGAACGATACGCCCGACAAACAAGATGCACCCTCGGAGCGAC
CGCCCGTCAAGAAGGATCCAGACCGACCGAGATACACGTTAAAAGAAATG
CAGAGTTTACTTGAGGAGAGGAACAcgtataaaatcaaaatgatgGCCCT
CGAAGAAGAGCTAGAACTTTATAAGGACGGTGGGCCGAACTTTTTGAAAG
CGACACAATCCGCACCAGCCAACGTCAACGATCCCCAAAAGAAGAATTCT
GGTGTTAGAACGTTtaTGCAGAAATTTCTTGGGAAGTAATCTGTGAAAAC
CCTGGACGTAACCGGTCTCCAttctttagtttgttttttatttatatgaA
AATATAGTTGAATTTATATAATTAtagaaaaagaaaggatttattttgaa
aagcaAGAGAAACGTTTTAATTTGAgttatgaaaaaattatttctaaagt
ttttttatcattgaaaattatttttattaatttttttttttacgttgaat
atttttttaaaattaaattcagTTTGTTTGTTAAGTTTGAAATGTTTGAA
ATGTTATTTTATGAATGCTCTATGAAGTGAATATCTTTTTCCACTATAAT
ACTTCGACAACTTCGAGCTGGTGTTCAACCACTGCATAACTATTTGCTCC
TTTCCCAATGTCTTTCTCACAACCCTTAAACGGGCAAAACCTTTCGTTGG
GTAACATTTTTAACTCTAAGAAAGTCTCTTGAAGTTGACAAGAAAGGAAA
GATTTGCctaaaaattccgtcactttccCCGACTAAATATTTCACTTTCA
TGACACTTTTGCACATGGAGAATACATTGAAAAGTACTTGGTAACGTAAT
ATAATCTTCCTTGCATCTAGTCTACACGAGGATGAATAATATATCTCTAA
TATTTGTTTCAatatactttaagggcagaaactttcgcgggcagaaactt
tcacgtttttcgcggttttgatcctttttcgcgaagaaagtttctgccag
gtaagaaattaaacctgaaaaGCGCGAAAGTTCTTTTCgcaaaaaataaa
ctttcctactcaggtttgcactgtttgctaaatttttgcgtgttttatga
gtttttgttaccaaaaagggtaaattttatatgaatttgCGAAAGTTCTT
TCTAAGAAATTTCGGCTAAAACCATaattcgcgaaacttaaattcgCAAT
ATCTCGCCATTTTTTTAacttcgcgaaactttctgcccgcgaaactttct
gcccttaacaatatattatttcattattatattattgacgaatttttaaa
gaatataacatttttttgtaattcaTAAATACTCCCATTGTTGCTTAGCA
TTCAAATACACAATTCGGAAGAAATTCTATTCAAGTTGTGTTGTACGAGT
ATtaaagttgactctctctaattcgaggtTCAAGGACCAAAAGTTTTCTT
ctaattagagaaagattcgaattacagagagtaatttaaaccattTCCAG
Run BLAST on NCBI

protein sequence of TCONS_00056314-protein

>TCONS_00056314-protein ID=TCONS_00056314-protein|Name=TCONS_00056314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MEDANYNEYEEEETMENSSFAVLTTSICLTSDETNDTPDKQDAPSERPPV
KKDPDRPRYTLKEMQSLLEERNTYKIKMMALEEELELYKDGGPNFLKATQ
SAPANVNDPQKKNSGVRTFMQKFLGK
Run BLAST on NCBI

transcript from alignment at scaffold_272:177555..181041+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056314 ID=TCONS_00056314|Name=TCONS_00056314|organism=Clytia hemisphaerica|type=transcript|length=3487bp|location=Sequence derived from alignment at scaffold_272:177555..181041+ (Clytia hemisphaerica)
aaaagatgtagaaaaagaatccccttgatgaaaatcatgtgtttgatttg ccgagttaaaaaataaatgacagaaattgaagcttgcaacagatttacac tcaGTTACACTGGAAAtgctttggtacaacactgacttatcacatctgac ttatcacATTTCGCTAAATGCTCAGAGCGCGACGGcccattttccctttc ctatctttcaccttacctgtttattctactttctgagacttagtttctct cTGAGCAATCAGCGaaatctgacttatcgcttgagccgccatcttgaaac accacattatgatctgtaaaaacgacgctaaaagtacccaaaaagttaac ccaatcggaagaaagtttagaaatcaaagtgagatcgggaaatcggattt ttttttttgccgtctcatggaactggaaaattttacctatttgaatgctc agcttaggctgaccaaaaacttttacttttaATTTGTCCTATCTACTTTA ACAGTTCATCTTTTTGGCCATTGCTTATATGTATTAGATCTTTACCTTTT AGCTTCAAGAACAAGTCACGCGTCTGGGTGACATCAACGAGCGTTTACGA TCCGATTCGAGTGTCTTATCGAACGAATCTATAACATCCAGCGAATCGAT TCACAACGAGAAGGCTGATCTTAACACTTCGACTGCATCTCTATTAGATG AACTACGAATGGAGGATGCGAATTATAACGAATATGAAGAGGAAGAAACT ATGGAAAATTCGAGTTTCGCAGTCTTAACAACGTCTATATGTCTAACAAG TGATGAAACGAACGATACGCCCGACAAACAAGATGCACCCTCGGAGCGAC CGCCCGTCAAGAAGGATCCAGACCGACCGAGATACACGTTAAAAGAAATG CAGAGTTTACTTGAGGAGAGGAACAcgtataaaatcaaaatgatgGCCCT CGAAGAAGAGCTAGAACTTTATAAGGACGGGTAAGACCCTTTTTTACATT TACTTTTTACGGGCTGGAAGTTTCGCGTGGTCAAAATTATTGGCCCCGTA GTTCTGCTTATTTTTTAGCGAGTACCTCACAAAAATGGGGGATTTTTTAT TTCCTTACACTTTGATGGTTTTAGGAAAAAGAGGGCTTCGAAAGTCGAAT GTCTGGAGCCCGAAAATCTGGCAGTAacgaaaaatcccggtttttggtaa GGTGCTCGCTAGAAAACCTGTAGGAATCGAGAGTGGAGGTGACCCATGta tcatttgataacacatgTGAAAGCTTTTCAATCGGGTATCAACTCTCCAA TCGTGTTTGAAGTTTTCCTGTATTTCCATTTTTATTTAGTGGGCCGAACT TTTTGAAAGCGACACAATCCGCACCAGCCAACGTCAACGATCCCCAAAAG AAGAATTCTGGTGTTAGAACGTTGTAAGTAGTTGTTCTTTGGCTGTCCAA TTCTTTCCGTCCCTGCCTTAGCCAAAGAATTTAAATCTTCGTACAAATTT GTACAGCTTTTCCCAAAGAAAATTGTAATCTTATTTCAACTATTCTAAGC CGAGTCAAAATACTGAGTTTTGAGGAATTTActttataaattaaaatttg ctggttttttttgggacaccctTTATTTCTTTGGTTGTCTCCCTGTCGTA GTTTTGGTTTCAACAACTCCATCTTTAAATatattaaggccggtctccac ttgcgcgcgctgcgatcgcactttttggtttcaatactttttgcttggaa aaaagatcatgtcataaaaatgtagcgcgcgcttgtaaaaaatgttgaac acatttcaacttttttaaccgttacgtcagatcgcgccaatggagttgct taatttttcttttgaccaatagtgTGGAAGCTTttctcgaaaaagtgcga tcgaagcgcgcgcaagtgtaGACCGGCCTTTAGGGGATCTTTGAAATGTA CGCTTTGATATACGAATAATCTTTTTAGAACAAGACTCGTGCCTCAGATG TGTGGCTTTCAGGAGGTCCCCCAAAATGTAGCTCTTAACATTAACACTAA TCCTTACGTTAACTTGTTTAATtatctaccttatcggggaaaacttcgtc gggaaaaagtaacgaaattttggccttaatgcgtttaccaactaccagca agtgacgaatattttttcccgacgaagttttccccgataaggtatttacT CATGCTTTTCAACTGTTATCGATTCATTAATcgactttttctatttttta gtaTGCAGAAATTTCTTGGGAAGTAATCTGTGAAAACCCTGGACGTAACC GGTCTCCAttctttagtttgttttttatttatatgaAAATATAGTTGAAT TTATATAATTAtagaaaaagaaaggatttattttgaaaagcaAGAGAAAC GTTTTAATTTGAgttatgaaaaaattatttctaaagtttttttatcattg aaaattatttttattaatttttttttttacgttgaatatttttttaaaat taaattcagTTTGTTTGTTAAGTTTGAAATGTTTGAAATGTTATTTTATG AATGCTCTATGAAGTGAATATCTTTTTCCACTATAATACTTCGACAACTT CGAGCTGGTGTTCAACCACTGCATAACTATTTGCTCCTTTCCCAATGTCT TTCTCACAACCCTTAAACGGGCAAAACCTTTCGTTGGGTAACATTTTTAA CTCTAAGAAAGTCTCTTGAAGTTGACAAGAAAGGAAAGATTTGCctaaaa attccgtcactttccCCGACTAAATATTTCACTTTCATGACACTTTTGCA CATGGAGAATACATTGAAAAGTACTTGGTAACGTAATATAATCTTCCTTG CATCTAGTCTACACGAGGATGAATAATATATCTCTAATATTTGTTTCAat atactttaagggcagaaactttcgcgggcagaaactttcacgtttttcgc ggttttgatcctttttcgcgaagaaagtttctgccaggtaagaaattaaa cctgaaaaGCGCGAAAGTTCTTTTCgcaaaaaataaactttcctactcag gtttgcactgtttgctaaatttttgcgtgttttatgagtttttgttacca aaaagggtaaattttatatgaatttgCGAAAGTTCTTTCTAAGAAATTTC GGCTAAAACCATaattcgcgaaacttaaattcgCAATATCTCGCCATTTT TTTAacttcgcgaaactttctgcccgcgaaactttctgcccttaacaata tattatttcattattatattattgacgaatttttaaagaatataacattt ttttgtaattcaTAAATACTCCCATTGTTGCTTAGCATTCAAATACACAA TTCGGAAGAAATTCTATTCAAGTTGTGTTGTACGAGTATtaaagttgact ctctctaattcgaggtTCAAGGACCAAAAGTTTTCTTctaattagagaaa gattcgaattacagagagtaatttaaaccattTCCAG

Coding sequence (CDS) from alignment at scaffold_272:177555..181041+

>TCONS_00056314 ID=TCONS_00056314|Name=TCONS_00056314|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_272:177555..181041+ (Clytia hemisphaerica)
ATGGAGGATGCGAATTATAACGAATATGAAGAGGAAGAAACTATGGAAAA
TTCGAGTTTCGCAGTCTTAACAACGTCTATATGTCTAACAAGTGATGAAA
CGAACGATACGCCCGACAAACAAGATGCACCCTCGGAGCGACCGCCCGTC
AAGAAGGATCCAGACCGACCGAGATACACGTTAAAAGAAATGCAGAGTTT
ACTTGAGGAGAGGAACAcgtataaaatcaaaatgatgGCCCTCGAAGAAG
AGCTAGAACTTTATAAGGACGGTGGGCCGAACTTTTTGAAAGCGACACAA
TCCGCACCAGCCAACGTCAACGATCCCCAAAAGAAGAATTCTGGTGTTAG
AACGTTtaTGCAGAAATTTCTTGGGAAGTAAATGGAGGATGCGAATTATA
ACGAATATGAAGAGGAAGAAACTATGGAAAATTCGAGTTTCGCAGTCTTA
ACAACGTCTATATGTCTAACAAGTGATGAAACGAACGATACGCCCGACAA
ACAAGATGCACCCTCGGAGCGACCGCCCGTCAAGAAGGATCCAGACCGAC
CGAGATACACGTTAAAAGAAATGCAGAGTTTACTTGAGGAGAGGAACAcg
tataaaatcaaaatgatgGCCCTCGAAGAAGAGCTAGAACTTTATAAGGA
CGGTGGGCCGAACTTTTTGAAAGCGACACAATCCGCACCAGCCAACGTCA
ACGATCCCCAAAAGAAGAATTCTGGTGTTAGAACGTTtaTGCAGAAATTT
CTTGGGAAGTAAATGGAGGATGCGAATTATAACGAATATGAAGAGGAAGA
AACTATGGAAAATTCGAGTTTCGCAGTCTTAACAACGTCTATATGTCTAA
CAAGTGATGAAACGAACGATACGCCCGACAAACAAGATGCACCCTCGGAG
CGACCGCCCGTCAAGAAGGATCCAGACCGACCGAGATACACGTTAAAAGA
AATGCAGAGTTTACTTGAGGAGAGGAACAcgtataaaatcaaaatgatgG
CCCTCGAAGAAGAGCTAGAACTTTATAAGGACGGTGGGCCGAACTTTTTG
AAAGCGACACAATCCGCACCAGCCAACGTCAACGATCCCCAAAAGAAGAA
TTCTGGTGTTAGAACGTTtaTGCAGAAATTTCTTGGGAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035477XLOC_035477Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056314-proteinTCONS_00056314-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056314-exon-scaffold_272-1491911889:177555..178534TCONS_00056314-exon-scaffold_272-1491911889:177555..178534Clytia hemisphaericaexon
TCONS_00056314-exon-scaffold_272-1510915933:177555..178534TCONS_00056314-exon-scaffold_272-1510915933:177555..178534Clytia hemisphaericaexon
TCONS_00056314-exon-scaffold_272-1575043694:177555..178534TCONS_00056314-exon-scaffold_272-1575043694:177555..178534Clytia hemisphaericaexon
TCONS_00056314-exon-scaffold_272-1491911889:178894..178977TCONS_00056314-exon-scaffold_272-1491911889:178894..178977Clytia hemisphaericaexon
TCONS_00056314-exon-scaffold_272-1510915933:178894..178977TCONS_00056314-exon-scaffold_272-1510915933:178894..178977Clytia hemisphaericaexon
TCONS_00056314-exon-scaffold_272-1575043694:178894..178977TCONS_00056314-exon-scaffold_272-1575043694:178894..178977Clytia hemisphaericaexon
TCONS_00056314-exon-scaffold_272-1491911889:179806..181041TCONS_00056314-exon-scaffold_272-1491911889:179806..181041Clytia hemisphaericaexon
TCONS_00056314-exon-scaffold_272-1510915933:179806..181041TCONS_00056314-exon-scaffold_272-1510915933:179806..181041Clytia hemisphaericaexon
TCONS_00056314-exon-scaffold_272-1575043694:179806..181041TCONS_00056314-exon-scaffold_272-1575043694:179806..181041Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:177555..181041 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (3.59645 tpm) - - (36.2451 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.6551 22.0011 6.48935 3.59645 13.2361 10.0382 16.9705 19.1038 10.6577 12.9504 10.1506 8.31147 10.6372 11.4961 13.3626 13.9293 18.2377 19.6197 11.449 11.091 10.5498 10.717 16.7695 15.4566 25.4467 26.511 36.2451 26.487 21.7974 17.6405
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021563RILP_dimer
IPR034744RH2
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Sequence
Match NameE-valueIdentityDescription
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