TCONS_00056317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056317
Unique NameTCONS_00056317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056317 ID=TCONS_00056317|Name=TCONS_00056317|organism=Clytia hemisphaerica|type=transcript|length=1686bp
CACGGAATTATACAAATTATTATGTTCTTGATATATTCTCGATTGCTATA
AATGTTGGAACATCACAATTAAAATATTATCACctctaaaataattttga
agGGCCATTGATTGAAGAACctaaaattttcacgttttGATAATAATTCT
TGTTGAGGAATTTTACTGTACTTTTGCTCATGGGGATATGATGAAGACAT
TTTTCACAATGAGTTTGTGCTAActttattattaatttttgacAATGATT
TATCATTATGTATTTGATAGTGTTTGTGTGTCAGCTATGCTTTGTTTACT
CCAATTGGTATTCGGgcgaagaaaaacaacaaacaacaatacATCTTGAT
ACAGAAGAAGCATCCAAACCTATTTCTACGTCATCACCGATCGAATGCAT
TTTGGAATGCCAGAAAACAGTTAAAGAAAGCTATTATGTAGAAAAggaaa
atcaatgtttttgcttgaaaaatgaagatcagAAGATATTCTCGAGGAAG
AAAGCTGAAGGAATATTTTACGCTTCTAAGCGATATCGAAATTGCCAAGA
AATCAAAGATGTATGTCTCAATTGCAAGTCTGGCATTCACACAGTTGAAC
CTGAACGTGATGTATCGACCAAAGTTTTTTGTGATATTGATACAATTAAA
GGTAccaaatacacctttttgatCAACGGTAAACGTCACCCATCATTGAA
ACTTATGGACAAATGGGAAGGTTTTCCTCAAACTTATGGTGTTGGAAAAA
CATATGTTGGAGATGTTCAAGATGAGGTGTTCAGAGCAAATGAAATCATC
ACCTGGGAAAATACTGCAGGACGAAGTGGACCATATCAATGGTTAGGATT
CAGCTCTAGTGTTTTCGCCAATAAACAACTGCATATTGAATTCTGGATTA
AGTTTGTGGCATCTGTTCCAAACCGTTCTAACAATTTTGGGATGAAAGTC
TATGATGTGATTTATAATTCGTGGGTCGATGATTGCCAAAAAGATGAGTG
GTGCAAAGTATCTTTGAATGTCAAGAATCGCAGCTCTGGAGATGGCTTTC
ATGTCATTTTGATCTTTGATTCCATCAATCGAAGACAAGTCGTTCGAATT
ACACATTTCACACTAaccattttgaaataaaaatgttatGCAATCTTGCA
AATGGAGGATACAAGTTGTTTAGCCCCAAGTTTGGTATCCAGAGACACTT
GCaccaatttttgattttactaaTGGACGTGATAAAAAAGTGAACTAAGA
GACTGGGTTTGAGTATTGTGTAGCCCCTTAATGGTATTTTTTAATGTGTC
ATGTCCCTCTGTCTCTCTAGTAGTCACAAAAGTCACACATCGATACTTTA
GCCCATGTAAAGATACAAAATGTTTTATTAGAATCAAAAGAGCACGGAAA
TTCACAATATTTTAACACGATCTGTACCAACCTGTAGTGGAGGAATCAAA
AGGCCGTCTAACATTTGATACAAAAACCTTTTTCCTGTATTTTGGGGCCC
TTTCAATAGCCTGTTACCGACTACAAGTTTTCTGCTGGCTATAAAAAGGT
CTTTAAAATGTTATCCAAAACTTTGATTTTAGAGTCCCCATTCTGTATTA
GATTTTTACTCTGATGATGACCTCTTGTGAGTGAGGTCGAATatatagtt
taaaaaaaaaacaaaaaacaattataaaaAGGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00056317-protein

>TCONS_00056317-protein ID=TCONS_00056317-protein|Name=TCONS_00056317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MYLIVFVCQLCFVYSNWYSGEEKQQTTIHLDTEEASKPISTSSPIECILE
CQKTVKESYYVEKENQCFCLKNEDQKIFSRKKAEGIFYASKRYRNCQEIK
DVCLNCKSGIHTVEPERDVSTKVFCDIDTIKGTKYTFLINGKRHPSLKLM
DKWEGFPQTYGVGKTYVGDVQDEVFRANEIITWENTAGRSGPYQWLGFSS
SVFANKQLHIEFWIKFVASVPNRSNNFGMKVYDVIYNSWVDDCQKDEWCK
VSLNVKNRSSGDGFHVILIFDSINRRQVVRITHFTLTILK
Run BLAST on NCBI

transcript from alignment at scaffold_272:185120..199140+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056317 ID=TCONS_00056317|Name=TCONS_00056317|organism=Clytia hemisphaerica|type=transcript|length=14021bp|location=Sequence derived from alignment at scaffold_272:185120..199140+ (Clytia hemisphaerica)
CACGGAATTATACAAATTATTATGTTCTTGATATATTCTCGATTGCTATA AATGTTGGAACATCACAATTAAAATATTATCACctctaaaataattttga agGGCCATTGATTGAAGAACctaaaattttcacgttttGATAATAATTCT TGTTGAGGAATTTTACTGTACTTTTGCTCATGGGGATATGATGAAGACAT TTTTCACAATGAGTTTGTGCTAActttattattaatttttgacAATGATT TATCATTATGTATTTGATAGTGTTTGTGTGTCAGCTATGCTTTGTTTACT CCAATTGGTATTCGGgcgaagaaaaacaacaaacaacaatacATCTTGAT ACAGAAGAAGCATCCAAACCTATTTCTACGTCATCACCGATCGAATGCAT TTTGGAATGCCAGAAAACAGTTAAAGAAAGCTATTATGTAGAAAAggaaa atcaatgtttttgcttgaaaaatgaagatcagAAGATATTCTCGAGGAAG AAAGCTGAAGGAATATTTTACGCTTCTAAGGTAACtatcctggggggggg ggggttttgggAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggtatttaggaaaat ggagggtacggtatgtgccgcccttaagggtattttttttggactaagtc ccgctaagggtcggaaaaatcagaaaatctaatttcagtctTACTAAGGG TCGGAGTAAAATTCGaaagaaagatcgaaatttggtcaaaattggtcaaa tttgtcccaataagggtcgtaaaattcacaacacgtttctttgttttctc atttttagtcccggtaagggtctaAAGGTCGAAGATCGGGCggcagcccc ccccccccccccccccccgggggaaccattttttttaaatttaattttgg gtttctattttttttttctttttatgtccGTAATGGGTTTAAAGGCGCAA GAGCGGGGggccgcccccccccccccgtcagctcgcaaccctagtccccc ccccccccccgtcagctcgaaACTCTAGTACCTCCCCCCTGGGGGTAACT ATATGTCTGAAATTCTACTGTGAGTATCTATGTTTATTTCAGTTTAGCTT TTTCTGTTCTGAAATTTAACCTGTGAGGACAGATCATAACAATTTTTTGT ATCACGCATATCTCTCACAtatttagtctgaatcgcagacttctatataa tatatatatatttcctatataagaaacttttttcgctagaggatgaacAG AAGCAGGAGAAGCCTATCATATATTgggcttttttttaatacaagcAATG AGAATCTTTTGCGCTGTCTGTCAGCAATAAAAATAGATTATGAgggaatt ttgataaaatacttCGAAAAGCTCTTAGATCAAGAGCTTGCATTTTCATA TCAATGAAGGGTGCCGTAGGGTAGGCTTGGGTAGGGTAGATTATTTTTTA GCAGATCTTTATTGTCTCTTTTGTGCTCAAATGACTTGAAAGTTTTCtat gcattttttttcaaatttaaggtCTCTagacatacccaatttttcgattt taccccaacttaaatggcagtttaaattcattttttcaaaagcagtttgt tcttaaacatgtcaaagaagcgaaaataTAAGGTTTtatccacagatatc tgtaaagcccgaagggctagataagcAACTTTAAGccttctccagcaaaa aaaagtgaagcaaaaatttgactttttgaatttcgtgccaatggatagga tctagcattttaattgttttcggagcgcgagataaaaaaaagtaggcggc aaacgctatttcacatctctcaaaccggtgaaattgcatattttagtcac gtgactttggtaggaaatccttccaaacatAGGCTTCACTTTtggataaa agccgcaaatctagcccttcgggctttacagatctgtggtttTATCTTcc aattctgaaattgatttttcactatgaccagagtCAGAGCCCTtagggag cggtcataaagtatctactagaggggggtggaggatattttgaaaaatcc aaaaaaaatttcgcaccccctcccctaacctggaaaaaatttttacgcga aaaagaattcatccagatgcggtacaaagagtattatttgtttgtatgtC AAAATAAGGTAAGGGAGATAGTTTAGCCCTGTTAAGTTAAAGTATAACAG GGTTAAGACAATAATCATCAAGTGGTTTTCTCTGAGCttctgtaaaattt ggaaaaaaatacggcttattttccccagtagtgacctggcttaattttct gggggtgcaaactatgaaattggcgcccctggtattttttgtccttactC GCGCCCTCCATTATTAAGTGAAACTAGAAACTGTAAGCAGTATGGTTGAA AGgaacgcccggaatctttgacttgagtcaagaaacttggaatttgtttt ttgtaatttgaaatgttaagGTGTTTTGGCATTAGCAGatgctaaggagg cgcaaccatggtttgtgcCGACAagcgaaaatttcaatatttttcaccac cattttagctaaaagacactttgttttgacaaatttcttttaagaagtac tttttcaaaccactctgatgagctgtgagagccactaatctacttccctc aCCTAGCTCAATGTTAAAAACCAAAAGGGCAAGgtgatgatgcccaaata atgcCAATATGAAATGTACATATATGCAATAAGATAAATTATGAGTTGTC GGCCGTAAGGccgaaaaattttggaaatcttcaaacgtaaaactatgaaa ttagacttcctacattttctcttgagtttCCCAAAAAGAAATTGGAACAC CCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTCAATACGTGAATCACGCAATCTTTTTTTGCGTGAATGtatgaaa tttctatttttacccTCAAATAAGCGTATGTAAATTTTCCGAATTTTTCC TATTCCTAAGTTCTTCAACAATGGCATTCATGGTAgtgaaaactattttt gaagGATTGATTCAAAAATAcacattttctttcatttctccTTTCCTCTA GAgtatacaataaaaacattatGTGTGATTTTTCAGCTCTCATTTTATAC ACTAAAATCCATTCGCTCTAGGTGTGCACTTATCTAAGTTTGCCATTTTT TGACCAATGCTACTATCATTAAATTTATTAtgtaccgttgaaaagataat tcagatcACTATaatttcatagaaaaataatgtttttccattcatgtttt tttgtttttgttttttcatcaGCGATATCGAAATTGCCAAGAAATCAAAG ATGTATGTCTCAATTGCAAGTCTGGCATTCACACAGTTGAACCTGAACGT GATGTATCGACCAAAGTTTTTTGTGATATTGATACAATTAAAGGTAAAAC AAAAGTACAACTCCGGTGAAACCCACTTCAAAAAGTCAGAGATAGATTCA AATTAGTTGATCATCGGATCTTTAGCCTATCACTGGATCTTTAGATCATT CCTTATATAGGAACATTAGCCTAAAAGCTAGAAAACTGTCAATGTCTTTC AAAATGTCTTATGTAGTTTATGCCAAACTTTGACTTAAAGCGCATGCGTA AGGGCATTATGTTCTAGAGGAAATAACTATTTTTAGTTTACCTTTGTTTG AGTTTTCTTTTCTCGATAATAGTCTAAAGAACCGATCCGGCTTAAAGAAA CGATGATTTGCTTATTAGATCTTTTCCCTGACTTTCAATCACCCAAACTA CTCTTTTAGGTGTAAAAACTTTcccgagcagaaactttcacgaaaaataa caaaatttacgACATTCTCGTATAACTCCAAATAGGACATAAGTTTGAtg aggaaaatttaaaaagtcaaaaaaaaaatttactataACTGGCagttttg aaatctacatccttatacgcttcttttgacgtAAAAATGACCATGACTAA GGCCCTAAATTTTCTGCACCAAACTTATGTCCTTTTTGTACATGCCACAC GAGTTtattactttcgcgaattattCGAATTATTTGCGAATATTTTAAAC ATCTTTTTTACGAACCATCTTAACTGTGACACGAATTTTAGTTTAGTAAA AAACGCCTTTCATGGCATTTTCCAAACTCTCAAAACCAACTCTCTTTATC GCTGTTTAGGcctaaaaaaggcaaaaacctCTTCACAGAAACCAGTTGGA ATCTTCCCATTAGGGGATGTTCGCATCTATCTCTCAAAGCTTCTAATTAT CACGAGAAACACTAGAAGTTAAGCTAGGTTAATGAacatgatgatttttt ttactcAGGTAccaaatacacctttttgatCAACGGTAAACGTCACCCAT CATTGAAACTTATGGACAAATGGGAAGGTTTTCCTCAAACTTATGGTGTT GGAAAAACATATGTTGGAGATGTTCAAGATGAGGTGTTCAGAGCAAATGA AATCATCACCTGGGAAAATACTGCAGGACGAAGTGGACCATATCAATGGT TAGGATTCAGCTCTAGTGTTTTCGCCAATAAACAACTGCATATTGAATTC TGGATTAAGTTTGTGGCATCTGTTCCAAACCGTTCTAACAATTTTGGGAT GAAAGTCTATGGTGTGGTTTATAATTCGTGGGTTGATGATTGTCAAAAAG ATGAGTGGTGCAAAGTATCTTTGAATATCAAGTGTCGCAGCAATGGCTAT TATGTCATTTTGATCTTTGATTCCATCAATCGAAGACAAGTCGTTCGAAT TACACATTTCACACTAaccattttgaaataaaaatgttatGCAATCATTG CAAATGGAGGATACAAGATGTTTAGCCCAAAGGTTGGTATCCAGAGACAC TTACaccaatttttgattttactaaTGGACGTGATATAATCCATCACAAA TAAGTGAACTAAGGGACTGTGTTTGAGTATTGTGTAACCCCTTAATGGTC ATTTTTAATGTTTCATGTCCCTCTTTCTCTCTAGCTGTCGTAAAAGTCAT GCATCGATATTACAGCCTATGTAAAGATACAAAAtgttcatagcgacagc tacaTTCCCGGGGGGGGAGGTTACCCAAGATAAGCGGCCTAAAGTACGTC CAACCTTCTCAAAGTGCACTGTCACTGTCAAAATGAGCAAGGCGGGTAAG AAATAGTGCACTATGAGGGTGTAAAATCTTTAAATtgtgaccatattttg cctagAAATAGTCAAAATTTGCCGAAAAACACGCGTAAGatcgttttttt ttctcttaaatttactcaaatttggatAAATTTTCCCTGCATTTTAAaag tccgatttcaaaggcctaattttgggctgcaagtaaaatttttttttatt atttcaaaataattatttaatatATGATTAAGGTATGTATGACATATCTG AAAGCCAGTAATATTTTTTATCTAATGGTAATAATTTCggttaaatttta aaaacttaaacaggatataaataaaatctttagaattttaacattaccta cttcaaagaagttgaAGCCACccattgcttttgaattttgaaagaataAT TTCGGTACTCTGTTCCCAATGGATTGAACTAGAAAAGCTTCTTGGGATTT TTCTTTAGAATCTCTTAAACTCATAATCTTAGTTTTTGTACAAATATTga gaaaaaagttaatttttttcagttatctctAAATTGAGGATGAAAAACTC GATTAGATATAAAATCCaaagacactttttaagttttttctttGGGGAAT CAGGTTTAATAACTACGAATCCCGTTTCCAGAAATGCAGTTCGGGTGAAA CAACGCCTCAATTGTTATTTCACCCTCACTTTCTCCTAGGCTTGATATcc atttcaccgtctagttttttaatattttgtctctTTGTCCTTTTTCCATC tagaatttgattttcaatagATTTGTATTGcagtttttttatctttttat taatTCTCCATTATTTAATAATTTAGCTTTTATTTAATTGTATATTAATT GCCGTAATTTTTAATATTAACTTTTAACGATCattttaactttaattttc aattcatttttaatTATGTATAGCCGATGTAAATAAAAACCTtgtcaaaa aattcatttttatgttgaaaaaggCCTGTAAGGCCGAAATATTTATGAAA AGTTGTAACAACACTCAATGAAAACAAGAAACATTGGCTCTATATTGACT TCTAATATCATAGATAATACTAGTAGGGACCTTTAGCATCTAGGAATTTG AAAAAGTACGACAGGATTGAACAAAAAAAGCCCTTGGGGATTGATATTGG GATTCTTTTCATGTCAATTTTCTCATGAGAATAGTGAATTTTCATAGGGT AATTAATAGACGTTTTCAAAAAGGTTCCAAGGGTAgagtttttaactctg agttttaacgctagactaggaccttaggatctgaggatccaaaagttcaa aaatgatccagtagggcttgaaatatagcctagaaaccaataaatctctc acagatcgaaataatcgatgaaatcaagttgaaggcctaaaaattgacat tcttgctcgaacttcaattttcaaaaaatggtaaattagccaaaagtgcc aatatattatggcactgattgtagctaAGCACTTGCTTTTTTATGTCTTC TTCTTTGATATTTCTCTTAGACGAGCTCCGCTTTCTTGGAAAGCTTTTCA AACGAAATAATAACAAGTGCACAAGGTGATTACTGATCCAACGATGATTA AGAGACTTCAAAGATACTAAATCATTGTCCAAAACACAAACATGATTACT TATCGGGGAGAAAAATGTCAGGGAAAAAAAACCTGATGACAGATTGCGTA TTTTCTGGTCCAGTACGCTGAAGTTCTAAAGACGTGGGCGAAAATATACA GTTTTTagcgatctttagagcttcagcgtgtcgctttaagaaaactccac agctgctatcaggttaggggaagtgacgaaaattttgagggggtgacaaA ATTTTCCCCTGACAAATTTTCCCCCGATATCTTATCACCCTACCAAAATT TTTACCGggtttttttatccccgacgaAAAactttttcgtgatttttacc CCTgcccaaaacttttacccagtTTTTTAATCCCTGACCAATATTATCCC cgattaattttattttattttaacagaaacaagacgacttgaagtcgtaa atttcgcctaaagtttaaactgtatgggaaaaacaagaagtagagatgga agctaatctgaaatctactttacatcgagccttgatgaaacaattttata agaacaacgaggctcaaagtagctaaaaaaataagaccaatttaagaaca atggttgtttaattcttaagaaTAAATAACTGAAGGGTATCGATGGTCGC Gatggtatatcaccgtctatcaagagttattgatttgattctcataaagt atatgcttataagaaagataaatatgctcatattgtgtgccattgcttgt ttactttgtaaaaactaattaccgaaagttatatcaccatctatcaagag atattgttttattcttataaagtatatgcttataagaaaataaagaaaaa atccaatcTGTGAAGCTagagacacaaagatatatgacggaatccaaaga aaactcgcgaaaatcgtccgtggttatacgagcgtgcaATTTGTAAATCA AATTtggtgagttcgtccaccgtatcgagtacttcgtaatcgttttctaa tttttttcctcACCGCCGGCGCCGCCACCGCAGAATACTGACTGTAATAC TTTCACTATGGCGAAATTAAAAAGGATTTATACTGTAGTTTTCCATTGTA AACGTTTCCAGGGATGTTTCTTAACAGACAAATAGAATGACTTTCTTTTC AAACGAGTTCTTTTGCCTAATAAACACAACAAGCAAAGTTAAAACTACaa tggtttgataaaaaataacaatagtaACACAATGTTATTAGTTTCGGCGT TTCTTATCAAATATTTCCCTATtataggggaatatttgttaataccgtaa tttttcttctccaagtctaacgccggttttggtcaatttcgtgagtttat tgtgcatgagtctctttttaaatcaagctccggcggtaaaaacagtagaa tgttctttttttgaggcggaagacgtcattttttcGAGAAACGTCCGTGG AAAATATGCATACGGCACTCTATTTTCCTTACCGATGGGGCAACGAAGCC GgtttcggaagcgtattgttgatcggaccatactgctttgatTCTAAccg tcaaaacaaagatggcagcaAAAAATagcagccaattcgattgacttcaa aatatgccgTTTTTACCCTGAttgccaaatattttgcattcgttgacaaa aatttggcaaatgtggcaaaatttgagtgccataaatgccaaattaaaaa gatgtggtgaatctggcattcttggcgtttttggaacttacctccatacg tGTCCATCAcatgaagctgtgatcttttgattgaaattgtggatttggca aagttggtgagtatggcaaatttggaagtcaatcgaattggctgtagaca acaacttttgctctttcgctatttttttttggtttttatgctttaatgag ttgaattggatcatgatttttgtacgattatCACAAGGAATGATCGATGA TGAACGTTGTTTATCATtccttcctggatttgatgttttgtttacattct gttggtttggaatgagagatacaatctcttggtcttggtcttggaaaaac aggacattttgtcaactttcacaacaaactaacttcaattttgcttgtaa atttacataaattgtaagaaggcaagtgactgtgaaaAATCTGACCATGG TATACCTGAAAAATTTCATGcttgcaacatcaaaaaagtttgcacccaat CAATGTGACAATGCAAcaatggttgatgaactgattagctaaaaatttaa acatggagcaaaattgactggttaatgattgaatttcccttggtcttttt atctacaacaatgaattaactggttAGTGATAGTTAGTGAAAACTCTTTG TCCCGTGGGGAGAATAATTCTGTTGCTGTTAATTTCctgaatttcaaact ttttttaagctGATANaacagttagtgaaaactcttTGTGGGAAGAATAA TTCTGTTGCagttaatttcaaactttttttaagctGATAAAGCGGAACAC CACggccaatatgaagaatgttaacttctgaaattgtttatttcattgaa tatggatgtaatcaattgaaatcacctcacatgtacaattaaaatttttc ttgaacttggagatttttttCCTCGCGTGCATTTAAAACCTGGAAAACTT TAGTCGTGAATTTATTTGGAGATCTTTTTCCGCGttcattttaaacgtgg aaacttgtgttttgaatttggagattttcttatgtgcatttaaaacgtgg aaagcttttgtcgtgaacttgatattttcttccacatatgcatttaaaaa atgaagaaaactcaagtgatttcctggcatgacaactttttttctttcct gacatttttttggaaattatgattgtttccaagtatggtatgtgatattg tttgcttttgcagcatgcttttggaaatcataaaatggcttctgttaggg ggAATTctttcctatcgacattctttcagattatgaaaatgtttcccagt aaataaaaatgagatttttttctcaaaacctgAAATACTGGCAATTACAt aaatacatttttgaaattcttaagggcttgtgttgcttgatgttatctga gatttaaagcactttgaaatcttttgagtacatcaattattttatcattt gtaaaggaaatatttatctccatctttgcggctcttgtttgtATTTATGG AATTCATAATATTTCATGGAATATTTATAAAACTGATGCATAGCCCATAT ATTCAAGCATGAATAAAAAAAGGAGATTTATTCTCAGAAAGAGCTCTGat taaaatcatcaaagatGGTAAAGTAATCACCTTTtacaaacatttcaaaa tatattcttTGTTTGAATTTTCGGTGTTACTTTACacggaatttttcaaa ttattatgTTCTTGATATATTCTCAATTGCTATAGTAAATGTTAGTTCAT CACAATTAAATATTATCACCTCTAAAATAAATTTGACGAACCATTGATTG AGGAACCTAAAATGTTCAAGTTTTTGTTATTCTCGTCGAGGATTTTTACT GTACTTTTGCTTATTGGGATATGGTGAAGACATATTTCACAATGAGTTTG TACTAACTTTAATAATATCAATTTTTGACACTGATTTATCATTATGCATT TGATAGTGTTTGTGTGTCAGCATTGCTTTGTTTACTCAAATTGGTATTTG GgcgaagaaaaacaacaaacaacaacacaTATTGATACAGAAGAAGCATC CAAACCTATTTCCACTCCATCATCAATCGAATGCATCTTGGAAtgcaaaa aaacaatgaaaggaAGCTATTATGTCGAAAAggaaaatcaatgtttttgc ttgaaaaataaagatcagaAGATATTCTCGAAGAAGAAATCTGAAGGAAT ATTTAAAAGTTCTAAGGTAACTATATGTCTAAAATTCTACTGTCAGTATC TCTGACTATCTCAGTTTAGCTTTTTCTGTTCTGAAATTTAACCTGTGAGG ACAGATTTTTTGTATCGCGCATGTCTCTCACAtatttagtctgaatcgca gacttctatatatactatatatatttcctatataagaaaattttttcgct agaggatgagcagaagcagGAGAAGCCTATCATATATTgggctttttttt taatacaagcAATGAGAATCTTTTGCGCTGTCTGTCAGCAATAAAAAACA GATTATGAggtaattttgataaaatacttCGAAACAGTCTTAGCTAGAGA GCTTGCATTTTCATATCAATAAAGGGTGCCGTAGGGTAGGGCTTGGGTAG GGTAGATTATATTTAGCAGATCCTTATTGTCTCTTTTGTGCTCAAATGAC TTGAAAGTATTctatacatttttttcaaatttaatcacGTCAATACGTGA ATCTTGCAATCTTTTTTTGCGTGAATGtatgaaatttctatttttacccT CAAATAAGCGTATGCAAATTTCCCAATTTTTCCTATTCCCAAGTTCTTCA ACAATGACATTCATGGTactgaaatctatttttaaagGATTGATTCAAAA ATACACATCCCTGCCTTTTCTCTAGAgtatagaataaaaacattatGTGT TATTTTTCAGCTCTTATTTTATACACTAAAATCCATTCGCTCTAGGTGTG CACTTATCTAAGTTTGCCATTTTTTGACCAATgttaccatagtataagaa agccgcggctttttTATACTATGATGCTTTTTATACTATGATGCTACTTG TTTTTTCATTAGCGATATCGAAATTGCCAAGAAATCAAGGATGTATGTCT CAATTGCAAGTCTGGCATTCACACAATTCAACCTGAACGTGATGTATCGA CCAAAGTTTTTTGTGATATTGATACAATTAAAGGTAAAACAAAAGTACAA CTCCCATGAAACGCACTTCGAACAGTCAGAGATAGATTCAAATTAGCTGA TCATCGGATCTTTAGCCTATCACTGGATCTTTAGACCATGTTATATAGGA AAAATCAGCCTAAAAGCTAGAAAACTAAATCAGGCGGTGGTGTAATTAGG GCCGacgtaaaaggggccggcgttaaatcagggccggtgttaaaagggcc gataaggtaactATTTTTAGTTTTCCTTTGATTGAGTTTTCTTTTCTCGA TTATAGTCGAGAAAAGAACCGATTCGGCTTAAAAAAACGATGATTTGCTT ATTTGATCTTTTCCCTGACTTTCAATCACTCAAACTACTTTTTTAGGCgt aaaaactttcgcgagcaggaACTTTCACGAAACATCGCGATATATTTACG ACATTCTTGTGTAACTCCAAATAGGACATAAGTTTGGCgaggaaaattaa aaaagccaAGAAAATAATCTTACTAACATGCAGAAATCTACCTCCTTATC CTACGTTTCTTTTGACGAAAAAATGACTATGACTAAGGCCCCAAGTTCTC TACGCCAAATATATGTCCATTTTGGACATGCTACTTACACGAGTTTACTT AGAATTATCGAAGTATTTAAACATCTTTTTGTGAACCATCATAACTATGA CATGACTTTTAGTTTAGTTAAATtgctaattaaaaaaaaatttcatgtca ttttCCCAACAACTCTCAATACCAACTCTCTTTACCGCTTCTTGGCCTAA AAAAACCAGTTGGAATCTTCCCATCAGGGGATGTTCGCATTTATCTCTCA AAGCTTCTAATTATCACGAGAAACACTAGAGGTGATCGTTAAGCTAGGTG TAAATGAAGatgatgatttatttttttgtcatacAGGTAccaaatacacc tttttgatCAACGGTAAACATCACCCATCATTGAAACTTATGGGCCAATG GGAAGGTTTTCCTCAAACTTATGGTGTTGGAAAAACATATGTCGGGGATG TTCAAGATGAGGTGTTCAGAACAAATGAAATCATCACCTGGGAAAATACT GCAGGACGAAGTGGTAGTACACAATGGTTAGGATTCAGCTCTAGTGTTTT CGCCAATAAACAACTGCATATTGAATTCTGGATTAAGTTTGTGGCATCCG TTCCAAACCGGTCTAATAATTTTGGGATGAAGGTCTATGATGTGATTTAT AATTCGTGGGTCGATGATTGCCAAAAAGATGAGTGGTGCAAAGTATCTTT GAATGTCAAGAATCGCAGCTCTGGAGATGGCTTTCATGTCATTTTGATCT TTGATTCCATCAATCGAAGACAAGTCGTTCGAATTACACATTTCACACTA accattttgaaataaaaatgttatGCAATCTTGCAAATGGAGGATACAAG TTGTTTAGCCCCAAGTTTGGTATCCAGAGACACTTGCaccaatttttgat tttactaaTGGACGTGATAAAAAAGTGAACTAAGAGACTGGGTTTGAGTA TTGTGTAGCCCCTTAATGGTATTTTTTAATGTGTCATGTCCCTCTGTCTC TCTAGTAGTCACAAAAGTCACACATCGATACTTTAGCCCATGTAAAGATA CAAAATGTTTTATTAGAATCAAAAGAGCACGGAAATTCACAATATTTTAA CACGATCTGTACCAACCTGTAGTGGAGGAATCAAAAGGCCGTCTAACATT TGATACAAAAACCTTTTTCCTGTATTTTGGGGCCCTTTCAATAGCCTGTT ACCGACTACAAGTTTTCTGCTGGCTATAAAAAGGTCTTTAAAATGTTATC CAAAACTTTGATTTTAGAGTCCCCATTCTGTATTAGATTTTTACTCTGAT GATGACCTCTTGTGAGTGAGGTCGAATatatagtttaaaaaaaaaacaaa aaacaattataaaaAGGAAAG

Coding sequence (CDS) from alignment at scaffold_272:185120..199140+

>TCONS_00056317 ID=TCONS_00056317|Name=TCONS_00056317|organism=Clytia hemisphaerica|type=CDS|length=3492bp|location=Sequence derived from alignment at scaffold_272:185120..199140+ (Clytia hemisphaerica)
ATGTATTTGATAGTGTTTGTGTGTCAGCTATGCTTTGTTTACTCCAATTG
GTATTCGGgcgaagaaaaacaacaaacaacaatacATCTTGATACAGAAG
AAGCATCCAAACCTATTTCTACGTCATCACCGATCGAATGCATTTTGGAA
TGCCAGAAAACAGTTAAAGAAAGCTATTATGTAGAAAAggaaaatcaatg
tttttgcttgaaaaatgaagatcagAAGATATTCTCGAGGAAGAAAGCTG
AAGGAATATTTTACGCTTCTAAGCGATATCGAAATTGCCAAGAAATCAAA
GATGTATGTCTCAATTGCAAGTCTGGCATTCACACAGTTGAACCTGAACG
TGATGTATCGACCAAAGTTTTTTGTGATATTGATACAATTAAAGGTAcca
aatacacctttttgatCAACGGTAAACGTCACCCATCATTGAAACTTATG
GACAAATGGGAAGGTTTTCCTCAAACTTATGGTGTTGGAAAAACATATGT
TGGAGATGTTCAAGATGAGGTGTTCAGAGCAAATGAAATCATCACCTGGG
AAAATACTGCAGGACGAAGTGGACCATATCAATGGTTAGGATTCAGCTCT
AGTGTTTTCGCCAATAAACAACTGCATATTGAATTCTGGATTAAGTTTGT
GGCATCTGTTCCAAACCGTTCTAACAATTTTGGGATGAAAGTCTATGATG
TGATTTATAATTCGTGGGTCGATGATTGCCAAAAAGATGAGTGGTGCAAA
GTATCTTTGAATGTCAAGAATCGCAGCTCTGGAGATGGCTTTCATGTCAT
TTTGATCTTTGATTCCATCAATCGAAGACAAGTCGTTCGAATTACACATT
TCACACTAaccattttgaaataaATGTATTTGATAGTGTTTGTGTGTCAG
CTATGCTTTGTTTACTCCAATTGGTATTCGGgcgaagaaaaacaacaaac
aacaatacATCTTGATACAGAAGAAGCATCCAAACCTATTTCTACGTCAT
CACCGATCGAATGCATTTTGGAATGCCAGAAAACAGTTAAAGAAAGCTAT
TATGTAGAAAAggaaaatcaatgtttttgcttgaaaaatgaagatcagAA
GATATTCTCGAGGAAGAAAGCTGAAGGAATATTTTACGCTTCTAAGCGAT
ATCGAAATTGCCAAGAAATCAAAGATGTATGTCTCAATTGCAAGTCTGGC
ATTCACACAGTTGAACCTGAACGTGATGTATCGACCAAAGTTTTTTGTGA
TATTGATACAATTAAAGGTAccaaatacacctttttgatCAACGGTAAAC
GTCACCCATCATTGAAACTTATGGACAAATGGGAAGGTTTTCCTCAAACT
TATGGTGTTGGAAAAACATATGTTGGAGATGTTCAAGATGAGGTGTTCAG
AGCAAATGAAATCATCACCTGGGAAAATACTGCAGGACGAAGTGGACCAT
ATCAATGGTTAGGATTCAGCTCTAGTGTTTTCGCCAATAAACAACTGCAT
ATTGAATTCTGGATTAAGTTTGTGGCATCTGTTCCAAACCGTTCTAACAA
TTTTGGGATGAAAGTCTATGATGTGATTTATAATTCGTGGGTCGATGATT
GCCAAAAAGATGAGTGGTGCAAAGTATCTTTGAATGTCAAGAATCGCAGC
TCTGGAGATGGCTTTCATGTCATTTTGATCTTTGATTCCATCAATCGAAG
ACAAGTCGTTCGAATTACACATTTCACACTAaccattttgaaataaATGT
ATTTGATAGTGTTTGTGTGTCAGCTATGCTTTGTTTACTCCAATTGGTAT
TCGGgcgaagaaaaacaacaaacaacaatacATCTTGATACAGAAGAAGC
ATCCAAACCTATTTCTACGTCATCACCGATCGAATGCATTTTGGAATGCC
AGAAAACAGTTAAAGAAAGCTATTATGTAGAAAAggaaaatcaatgtttt
tgcttgaaaaatgaagatcagAAGATATTCTCGAGGAAGAAAGCTGAAGG
AATATTTTACGCTTCTAAGCGATATCGAAATTGCCAAGAAATCAAAGATG
TATGTCTCAATTGCAAGTCTGGCATTCACACAGTTGAACCTGAACGTGAT
GTATCGACCAAAGTTTTTTGTGATATTGATACAATTAAAGGTAccaaata
cacctttttgatCAACGGTAAACGTCACCCATCATTGAAACTTATGGACA
AATGGGAAGGTTTTCCTCAAACTTATGGTGTTGGAAAAACATATGTTGGA
GATGTTCAAGATGAGGTGTTCAGAGCAAATGAAATCATCACCTGGGAAAA
TACTGCAGGACGAAGTGGACCATATCAATGGTTAGGATTCAGCTCTAGTG
TTTTCGCCAATAAACAACTGCATATTGAATTCTGGATTAAGTTTGTGGCA
TCTGTTCCAAACCGTTCTAACAATTTTGGGATGAAAGTCTATGATGTGAT
TTATAATTCGTGGGTCGATGATTGCCAAAAAGATGAGTGGTGCAAAGTAT
CTTTGAATGTCAAGAATCGCAGCTCTGGAGATGGCTTTCATGTCATTTTG
ATCTTTGATTCCATCAATCGAAGACAAGTCGTTCGAATTACACATTTCAC
ACTAaccattttgaaataaATGTATTTGATAGTGTTTGTGTGTCAGCTAT
GCTTTGTTTACTCCAATTGGTATTCGGgcgaagaaaaacaacaaacaaca
atacATCTTGATACAGAAGAAGCATCCAAACCTATTTCTACGTCATCACC
GATCGAATGCATTTTGGAATGCCAGAAAACAGTTAAAGAAAGCTATTATG
TAGAAAAggaaaatcaatgtttttgcttgaaaaatgaagatcagAAGATA
TTCTCGAGGAAGAAAGCTGAAGGAATATTTTACGCTTCTAAGCGATATCG
AAATTGCCAAGAAATCAAAGATGTATGTCTCAATTGCAAGTCTGGCATTC
ACACAGTTGAACCTGAACGTGATGTATCGACCAAAGTTTTTTGTGATATT
GATACAATTAAAGGTAccaaatacacctttttgatCAACGGTAAACGTCA
CCCATCATTGAAACTTATGGACAAATGGGAAGGTTTTCCTCAAACTTATG
GTGTTGGAAAAACATATGTTGGAGATGTTCAAGATGAGGTGTTCAGAGCA
AATGAAATCATCACCTGGGAAAATACTGCAGGACGAAGTGGACCATATCA
ATGGTTAGGATTCAGCTCTAGTGTTTTCGCCAATAAACAACTGCATATTG
AATTCTGGATTAAGTTTGTGGCATCTGTTCCAAACCGTTCTAACAATTTT
GGGATGAAAGTCTATGATGTGATTTATAATTCGTGGGTCGATGATTGCCA
AAAAGATGAGTGGTGCAAAGTATCTTTGAATGTCAAGAATCGCAGCTCTG
GAGATGGCTTTCATGTCATTTTGATCTTTGATTCCATCAATCGAAGACAA
GTCGTTCGAATTACACATTTCACACTAaccattttgaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035478XLOC_035478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056317-exon-scaffold_272-1491911889:185120..185649TCONS_00056317-exon-scaffold_272-1491911889:185120..185649Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1510915933:185120..185649TCONS_00056317-exon-scaffold_272-1510915933:185120..185649Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1575043694:185120..185649TCONS_00056317-exon-scaffold_272-1575043694:185120..185649Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1491911889:188842..188962TCONS_00056317-exon-scaffold_272-1491911889:188842..188962Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1510915933:188842..188962TCONS_00056317-exon-scaffold_272-1510915933:188842..188962Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1575043694:188842..188962TCONS_00056317-exon-scaffold_272-1575043694:188842..188962Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1491911889:189878..190173TCONS_00056317-exon-scaffold_272-1491911889:189878..190173Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1510915933:189878..190173TCONS_00056317-exon-scaffold_272-1510915933:189878..190173Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1575043694:189878..190173TCONS_00056317-exon-scaffold_272-1575043694:189878..190173Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1491911889:198402..199140TCONS_00056317-exon-scaffold_272-1491911889:198402..199140Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1510915933:198402..199140TCONS_00056317-exon-scaffold_272-1510915933:198402..199140Clytia hemisphaericaexon
TCONS_00056317-exon-scaffold_272-1575043694:198402..199140TCONS_00056317-exon-scaffold_272-1575043694:198402..199140Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056317-proteinTCONS_00056317-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:185120..199140 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (2.87794 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 9.324e-06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.182028 0 0 0 0 0.0570601 0 2.87794 1.89767 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014716Fibrinogen_a/b/g_C_1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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