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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056323 ID=TCONS_00056323|Name=TCONS_00056323|organism=Clytia hemisphaerica|type=transcript|length=1216bpRun BLAST on NCBI protein sequence of TCONS_00056323-protein >TCONS_00056323-protein ID=TCONS_00056323-protein|Name=TCONS_00056323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp IACTKKAKVDCKNSVVVLSPRSNKISPLPPQQHVDIKLNNNDLSVDEILVRun BLAST on NCBI transcript from alignment at scaffold_272:294205..306466+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056323 ID=TCONS_00056323|Name=TCONS_00056323|organism=Clytia hemisphaerica|type=transcript|length=12262bp|location=Sequence derived from alignment at scaffold_272:294205..306466+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_272:294205..306466+ >TCONS_00056323 ID=TCONS_00056323|Name=TCONS_00056323|organism=Clytia hemisphaerica|type=CDS|length=14580bp|location=Sequence derived from alignment at scaffold_272:294205..306466+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056323 vs. Swiss-Prot (Human)
Match: KKCC2 (Calcium/calmodulin-dependent protein kinase kinase 2 OS=Homo sapiens GN=CAMKK2 PE=1 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 1.438e-62 Identity = 111/219 (50.68%), Postives = 154/219 (70.32%), Query Frame = 2
Query: 596 RKSKTPTIEN---RIHNLE-ADQVNYYQLKEEIGRGSFGSIYKCHSSKDKQNYAMKVMSKRRLMRKSGLAGRRPN-----------RKHNPLEPLHREIAILKKMDHPNIVKLVEVMDDVQVDNVYMVFELMQNGVVIEVPTDKVIEEERARRLFQELLLGIEYLHYSKIIHRDIKPANLLLDDNDHIKIADFGVSDMFEGENDLLSKHAGSPAFQAPE 1207
R + PT+E+ I ++ Q+N Y LK+EIG+GS+G + ++ D YAMKV+SK++L+R++G R P + P+E +++EIAILKK+DHPN+VKLVEV+DD D++YMVFEL+ G V+EVPT K + E++AR FQ+L+ GIEYLHY KIIHRDIKP+NLL+ ++ HIKIADFGVS+ F+G + LLS G+PAF APE
Sbjct: 139 RLPRRPTVESHHVSITGMQDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPE 357 The following BLAST results are available for this feature:
BLAST of TCONS_00056323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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