|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056339 ID=TCONS_00056339|Name=TCONS_00056339|organism=Clytia hemisphaerica|type=transcript|length=4146bp
cccttttgacttttttatcattacatgcTTCATTTTGGGTTgaaggtcac
agtgttcaaaggtcataatttgaaaccacccataacacgcagatgttttg
gctgctggctggcagtttcctgcAAGAATACACTCCTAAAATGGATGATG
GAGGTTGGACGAGAAGAAGAAATTCATTCATTTTTacaaccgaccgaccg
actcactttttagacccaacaaggacgcgaaatgaagatatttgtcaCTT
CCGCCTTAGAGATGGAATAAAAGGAAGGTTGGAATCACTGATAGaagaaa
gatttttcctctctgaGCGTTAAGCAAAGACAATTTGTTCCAATAAGAGA
TTCCGGCTTTCCTATTGTTCCAATCCccaaagaagggtgtcaaaattaga
tgAGTGATGCCAACATTTGACCAACTTATGGTAGGACAAACTAGCTTCTT
TAtagccaatatttttggtttaaCGATGTGCAATTTCTACGAATAACAAC
AGCGGATACTTTAATctgattaaattttgcgagattaaatttcccaagca
aaaaaaattgcaaaattttctggatttaatttaaaattttacgtggattt
aatttcgcaagtaagcctgaaaacagctgaaaaatagtcatttttttgtc
ataaatggAGACTTTGGACTGGCTTACCCACCAAAAAtgtgatttcaaaa
attttgtgatgCATTTAATTTCGTGAttcaggaatctcacgcgtttttgc
gagttttaatttcccgaaaatggcaaaaattcgcaaaatttaatctcgca
aAAGGTAATCCAAATAAAGTAGGGTCTGGGTCACcaataagttgtgttcg
cgtcatTTCAGGccccaaaattaaaattttaagtaATGCTTAATAACGAG
GAAAAAAGGGATTAATGGATAACCAAGCattgaaattttagtttttaaaa
CAAGCTAGGCTATACTGTGTTACACACAAGGAAATAACAGttggttttct
tttgtttgccaTAGGCTATGGAATTTCTCTTTAATACAGTTTTTATCTTC
AAGTCTTTTTAGTTGAGATATTAATCAAGGAACTGACTATCTTTGATGAT
AGCTTTACGTTGCTATAATCTTCTATACTGTAATTTTGTTTAAtgcaaaa
aagttatttttttaaacagcttaCTCAGAGggttttatttataaacataT
AAACTGGGGGATGGGAATCTAAACTCAATTGAAACTGGAACTCAATTTTG
GCCACTTTCCTCCACATGAACTCCAAAACCTGGGTCCCACGTTCTTCATA
TATGTGTAAAATTTCTGTTTTGGTTGCTGTAATCTATATTTGGTTCCAGT
TCACCACTATTTGGAATTCAGGTCTATCCGTTAAAATGATAGAGGTCTCC
CTGGACGCAAGCCAAATCTGTTCTAGATTTTACTGCTTTagagatgtgat
ttatatagcaaattctCGCTCAGGTTATAAGTTACAATATAGCATAAACT
GCTCTGCTCATAAATCCTGTCATAAAGCCTGTCATCAAGCCTGTCATCGA
AACAATAGACagggggggtccatgtacaaaaaagcggcatgtatcatggg
gtgggtgggtcttttcaaaaaaaatttgctgttTAGTACTTGTGCACCAT
ACatgggggtgtcagggtcaaatttctgatttgcTGTTTAGTACTTGTGC
ACCATACatgggggtgtcagggtcaaatttctgatttgctgtttagtata
cgtgtgctatacagggggtgtcagggtcaaatttcggattttctgcttag
tatttgtgtactaaaaagccaaaatcaaatcaaattgtgattttttttag
atttttgtcgaaaatttttttaaattctcaattgtttttgtcaattttcg
agaaaattttttgaaaatttttttatgagaaaaataaaaaacttgcccca
aagtttcaagttttttggctcaaaatctttattttatgaaggggtgtagg
ggtatatttggtagttttctggatagtatattgtactatGTAAGGGGAGT
GTTGGGGTATATTTGGCAGTTTGCTtgatagtatattgtattatacaggg
ggtgtcagggtgtatttgggagtttgctggatagtattggatagtatatt
gtaaaatatagggggtgttggggtgtttttgggagtttgctggatagtat
tttgtacattttgtactataggggtgggtgggtgtttaaaatcgaaattt
gctacaaagtactgatacatgccgctgttttgtacatggaccccccccCT
GCAATAGAAAGTATTTAGGTACACAAGTTTACCAATTATGCTTTAATGTG
TAATTGTTGTGATGCtgtaattttttgttattcaaCATGATACCACACCT
AGCAAAAGGTCTAAAGAAAGTTGTTTGGCAGAATAAACTAANAAGCTCTA
AAGAAAGTTGTTTGGGAGAATATGCGAGCGTCGtttgaataactaatttt
tttattttgaaatttttcaattattatGCATAATACaatatgcaatatgc
attatgtttcaTGCATTTTAGACATGCCAGGTATTGGTCATCTGTATATA
TTGACTGTGTGTAAGCTTGAGGCTGCTTGAGGTGGTGAATTTGCTTAgaa
aggctgatctttatccatttcaatgttattttcacaaattttgatGTGAA
TAATAGGATGGTCATAATCGCTCATGGAAACTctatttctttgcttagca
ttcaaaaggaaaaattttttgattctgaccttcctattattcttAGCCCC
AAAGAAGGGTTTCGAAATTAGAAGAGcaatgtcgacattagaccaactta
gtTAGTTAACCAAGGTagtttttagccatttttcttAGAGTTTTACAAAA
ACATCTGATCATTTGGCTGACTGAAAACTGAACAAACTAAAAACTTTTAT
CTTAAAAGGAGAGAGGCCCCCAGATTTAAGTGGTGGCGTTGTTGTGCCTT
TTTTAGAGTGATGGTGTGATGTATGACAGCCTTGACTAAAACTCCCATAT
CAGGATTAAAAACTAGGCTAGTGTTACCTCTCTGTTTccttttacaacaa
tacaatgctgacataAGTTGAtacaaaaaataacaacaaataATCCCTGT
AAgaagtttatatcaaaatttgCAACAAAATTGAAAGTGGTCATCATTGT
TTGTCTttcttgataaaaaattaataggcctctttttgacgtttttgagc
actttctaaGAATTTACTCTTTTGATCATATCTTTTGATTCACTCGATCA
ttataaatgacccatcaaaatttattttaattttctctCCTTCTAATGTG
AAACTAATTATTcccaatttttttctaaagtttaaTTTATAATGGACCAA
AAAATACTATTACCAGCTTTGATAGGTGGAGTTATCGGGGGTGTGACATC
TCTTGGTCTCTATTGTCTCGTGAGTCatggaaaaaaagctaaaaaatcta
CCATAGAACGTATTGGTACTCAAGATCCAAGATCCAGCAGAGTTGTCAAA
CATGGTGGTATTATGTATGTGACAGGACAAGTAGGCGAGCTTGATAAACT
TGATGAAAGTGGAATCACAGAGCAAACAAAACAGACTTTgtttaaaattg
ataaaatccTTAATCAAAATGGTTTAGGACGTGAACGCATTTTGAGTGCT
CGAATTTGGCTCAAAAATATTGATACTGATTTTCAAGCTATGAATGCTGT
ATGGAATGCATGGGTCGATTCTCAAAATAAAGGTGTGAGAGTTTGCACTG
GCGGCAACCTAGCAAAGCCTAGTATGCTGGTGGAAGTGCAAATCACTGCT
GCATTATAAAGATTCATTAAAGGAAATAGAACTAAAAAGACCAGAAATTA
CTGATTTCCTCTGAGAAAACACTACAATTCAAGAGATTCAAGAGATATTG
TAAGTTGTTGCATTTTTTTTGCCCACCATGCCTGACGAGTATTTGTATAG
AAGAGtgtaaaattttgtttgtttatatttcttagaattatttttttcca
cttttatcatatttattaagatttaaatttttatttatgaaATAAATTCT
TGAAAGATAAAACAGAACAGATTtaatgagtttttttgaaaatccc Run BLAST on NCBI protein sequence of TCONS_00056339-protein >TCONS_00056339-protein ID=TCONS_00056339-protein|Name=TCONS_00056339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MDQKILLPALIGGVIGGVTSLGLYCLVSHGKKAKKSTIERIGTQDPRSSR
VVKHGGIMYVTGQVGELDKLDESGITEQTKQTLFKIDKILNQNGLGRERI
LSARIWLKNIDTDFQAMNAVWNAWVDSQNKGVRVCTGGNLAKPSMLVEVQ
ITAAL Run BLAST on NCBI transcript from alignment at scaffold_272:75132..79277 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056339 ID=TCONS_00056339|Name=TCONS_00056339|organism=Clytia hemisphaerica|type=transcript|length=4146bp|location=Sequence derived from alignment at scaffold_272:75132..79277 (Clytia hemisphaerica)
gggattttcaaaaaaactcattaAATCTGTTCTGTTTTATCTTTCAAGAA
TTTATttcataaataaaaatttaaatcttaataaatatgataaaagtgga
aaaaaataattctaagaaatataaacaaacaaaattttacaCTCTTCTAT
ACAAATACTCGTCAGGCATGGTGGGCAAAAAAAATGCAACAACTTACAAT
ATCTCTTGAATCTCTTGAATTGTAGTGTTTTCTCAGAGGAAATCAGTAAT
TTCTGGTCTTTTTAGTTCTATTTCCTTTAATGAATCTTTATAATGCAGCA
GTGATTTGCACTTCCACCAGCATACTAGGCTTTGCTAGGTTGCCGCCAGT
GCAAACTCTCACACCTTTATTTTGAGAATCGACCCATGCATTCCATACAG
CATTCATAGCTTGAAAATCAGTATCAATATTTTTGAGCCAAATTCGAGCA
CTCAAAATGCGTTCACGTCCTAAACCATTTTGATTAAggattttatcaat
tttaaacAAAGTCTGTTTTGTTTGCTCTGTGATTCCACTTTCATCAAGTT
TATCAAGCTCGCCTACTTGTCCTGTCACATACATAATACCACCATGTTTG
ACAACTCTGCTGGATCTTGGATCTTGAGTACCAATACGTTCTATGGtaga
ttttttagctttttttccatGACTCACGAGACAATAGAGACCAAGAGATG
TCACACCCCCGATAACTCCACCTATCAAAGCTGGTAATAGTATTTTTTGG
TCCATTATAAAttaaactttagaaaaaaattgggAATAATTAGTTTCACA
TTAGAAGGagagaaaattaaaataaattttgatgggtcatttataaTGAT
CGAGTGAATCAAAAGATATGATCAAAAGAGTAAATTCttagaaagtgctc
aaaaacgtcaaaaagaggcctattaattttttatcaagaaAGACAAACAA
TGATGACCACTTTCAATTTTGTTGcaaattttgatataaacttcTTACAG
GGATtatttgttgttattttttgtaTCAACTtatgtcagcattgtattgt
tgtaaaaggAAACAGAGAGGTAACACTAGCCTAGTTTTTAATCCTGATAT
GGGAGTTTTAGTCAAGGCTGTCATACATCACACCATCACTCTAAAAAAGG
CACAACAACGCCACCACTTAAATCTGGGGGCCTCTCTCCTTTTAAGATAA
AAGTTTTTAGTTTGTTCAGTTTTCAGTCAGCCAAATGATCAGATGTTTTT
GTAAAACTCTaagaaaaatggctaaaaactACCTTGGTTAACTAactaag
ttggtctaatgtcgacattgCTCTTCTAATTTCGAAACCCTTCTTTGGGG
CTaagaataataggaaggtcagaatcaaaaaatttttccttttgaatgct
aagcaaagaaatagAGTTTCCATGAGCGATTATGACCATCCTATTATTCA
CatcaaaatttgtgaaaataacattgaaatggataaagatcagcctttcT
AAGCAAATTCACCACCTCAAGCAGCCTCAAGCTTACACACAGTCAATATA
TACAGATGACCAATACCTGGCATGTCTAAAATGCAtgaaacataatgcat
attgcatattGTATTATGCataataattgaaaaatttcaaaataaaaaaa
ttagttattcaaaCGACGCTCGCATATTCTCCCAAACAACTTTCTTTAGA
GCTTNTTAGTTTATTCTGCCAAACAACTTTCTTTAGACCTTTTGCTAGGT
GTGGTATCATGttgaataacaaaaaattacaGCATCACAACAATTACACA
TTAAAGCATAATTGGTAAACTTGTGTACCTAAATACTTTCTATTGCAGgg
ggggggtccatgtacaaaacagcggcatgtatcagtactttgtagcaaat
ttcgattttaaacacccacccacccctatagtacaaaatgtacaaaatac
tatccagcaaactcccaaaaacaccccaacaccccctatattttacaata
tactatccaatactatccagcaaactcccaaatacaccctgacaccccct
gtataatacaatatactatcaAGCAAACTGCCAAATATACCCCAACACTC
CCCTTACatagtacaatatactatccagaaaactaccaaatataccccta
caccccttcataaaataaagattttgagccaaaaaacttgaaactttggg
gcaagttttttatttttctcataaaaaaattttcaaaaaattttctcgaa
aattgacaaaaacaattgagaatttaaaaaaattttcgacaaaaatctaa
aaaaaatcacaatttgatttgattttggctttttagtacacaaatactaa
gcagaaaatccgaaatttgaccctgacaccccctgtatagcacacgtata
ctaaacagcaaatcagaaatttgaccctgacacccccatGTATGGTGCAC
AAGTACTAAACAgcaaatcagaaatttgaccctgacacccccatGTATGG
TGCACAAGTACTAaacagcaaattttttttgaaaagacccacccacccca
tgatacatgccgcttttttgtacatggaccccccctGTCTATTGTTTCGA
TGACAGGCTTGATGACAGGCTTTATGACAGGATTTATGAGCAGAGCAGTT
TATGCTATATTGTAACTTATAACCTGAGCGagaatttgctatataaatca
catctctAAAGCAGTAAAATCTAGAACAGATTTGGCTTGCGTCCAGGGAG
ACCTCTATCATTTTAACGGATAGACCTGAATTCCAAATAGTGGTGAACTG
GAACCAAATATAGATTACAGCAACCAAAACAGAAATTTTACACATATATG
AAGAACGTGGGACCCAGGTTTTGGAGTTCATGTGGAGGAAAGTGGCCAAA
ATTGAGTTCCAGTTTCAATTGAGTTTAGATTCCCATCCCCCAGTTTAtat
gtttataaataaaaccCTCTGAGtaagctgtttaaaaaaataactttttt
gcaTTAAACAAAATTACAGTATAGAAGATTATAGCAACGTAAAGCTATCA
TCAAAGATAGTCAGTTCCTTGATTAATATCTCAACTAAAAAGACTTGAAG
ATAAAAACTGTATTAAAGAGAAATTCCATAGCCTAtggcaaacaaaagaa
aaccaaCTGTTATTTCCTTGTGTGTAACACAGTATAGCCTAGCTTGtttt
aaaaactaaaatttcaatGCTTGGTTATCCATTAATCCCTTTTTTCCTCG
TTATTAAGCATtacttaaaattttaattttggggCCTGAAatgacgcgaa
cacaacttattgGTGACCCAGACCCTACTTTATTTGGATTACCTTttgcg
agattaaattttgcgaatttttgccattttcgggaaattaaaactcgcaa
aaacgcgtgagattcctgaaTCACGAAATTAAATGcatcacaaaattttt
gaaatcacaTTTTTGGTGGGTAAGCCAGTCCAAAGTCTccatttatgaca
aaaaaatgactatttttcagctgttttcaggcttacttgcgaaattaaat
ccacgtaaaattttaaattaaatccagaaaattttgcaattttttttgct
tgggaaatttaatctcgcaaaatttaatcagATTAAAGTATCCGCTGTTG
TTATTCGTAGAAATTGCACATCGttaaaccaaaaatattggctaTAAAGA
AGCTAGTTTGTCCTACCATAAGTTGGTCAAATGTTGGCATCACTcatcta
attttgacacccttctttggGGATTGGAACAATAGGAAAGCCGGAATCTC
TTATTGGAACAAATTGTCTTTGCTTAACGCtcagagaggaaaaatctttc
ttCTATCAGTGATTCCAACCTTCCTTTTATTCCATCTCTAAGGCGGAAGt
gacaaatatcttcatttcgcgtccttgttgggtctaaaaagtgagtcggt
cggtcggttgtAAAAATGAATGAATTTCTTCTTCTCGTCCAACCTCCATC
ATCCATTTTAGGAGTGTATTCTTgcaggaaactgccagccagcagccaaa
acatctgcgtgttatgggtggtttcaaattatgacctttgaacactgtga
ccttcAACCCAAAATGAAgcatgtaatgataaaaaagtcaaaaggg Coding sequence (CDS) from alignment at scaffold_272:75132..79277 >TCONS_00056339 ID=TCONS_00056339|Name=TCONS_00056339|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_272:75132..79277 (Clytia hemisphaerica)
TTATAATGCAGCAGTGATTTGCACTTCCACCAGCATACTAGGCTTTGCTA
GGTTGCCGCCAGTGCAAACTCTCACACCTTTATTTTGAGAATCGACCCAT
GCATTCCATACAGCATTCATAGCTTGAAAATCAGTATCAATATTTTTGAG
CCAAATTCGAGCACTCAAAATGCGTTCACGTCCTAAACCATTTTGATTAA
ggattttatcaattttaaacAAAGTCTGTTTTGTTTGCTCTGTGATTCCA
CTTTCATCAAGTTTATCAAGCTCGCCTACTTGTCCTGTCACATACATAAT
ACCACCATGTTTGACAACTCTGCTGGATCTTGGATCTTGAGTACCAATAC
GTTCTATGGtagattttttagctttttttccatGACTCACGAGACAATAG
AGACCAAGAGATGTCACACCCCCGATAACTCCACCTATCAAAGCTGGTAA
TAGTATTTTTTGGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056339-exon-scaffold_272-1491911889:75132..79277 | TCONS_00056339-exon-scaffold_272-1491911889:75132..79277 | Clytia hemisphaerica | exon |
| TCONS_00056339-exon-scaffold_272-1510915933:75132..79277 | TCONS_00056339-exon-scaffold_272-1510915933:75132..79277 | Clytia hemisphaerica | exon |
| TCONS_00056339-exon-scaffold_272-1575043694:75132..79277 | TCONS_00056339-exon-scaffold_272-1575043694:75132..79277 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:75132..79277 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013813 | Endoribo_LPSP/chorism_mut-like |
| IPR006175 | YjgF/YER057c/UK114 |
Blast
The following BLAST results are available for this feature:
|
