TCONS_00056343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056343
Unique NameTCONS_00056343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056343 ID=TCONS_00056343|Name=TCONS_00056343|organism=Clytia hemisphaerica|type=transcript|length=366bp
TTAAATATTCCTTCAGATTTCTTCTTCGAGAATATCTtctgatctttatt
tttcaagcaaaaacattgattttccTTTTCGACATAATAGCTtcctttca
ttgtttttttgcaTTCCAAGATGCATTCGATTGATGATGGAGTGGAAATA
GGTTTGGATGCTTCTTCTGTATCAATAtgtgttgttgtttgttgtttttc
ttcgcCCAAATACCAATTTGAGTAAACAAAGCAATGCTGACACACAAACA
CTATCAAATGCATAATGATAAATCAGTGTCAAAAATTGATATTATTAAAG
TTAGTACAAACTCATTGTGAAATATGTCTTCACCATATCCCAATAAGCAA
AAGTACAGTAAAAATC
Run BLAST on NCBI

transcript from alignment at scaffold_272:195860..196225

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056343 ID=TCONS_00056343|Name=TCONS_00056343|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_272:195860..196225 (Clytia hemisphaerica)
GATTTTTACTGTACTTTTGCTTATTGGGATATGGTGAAGACATATTTCAC
AATGAGTTTGTACTAACTTTAATAATATCAATTTTTGACACTGATTTATC
ATTATGCATTTGATAGTGTTTGTGTGTCAGCATTGCTTTGTTTACTCAAA
TTGGTATTTGGgcgaagaaaaacaacaaacaacaacacaTATTGATACAG
AAGAAGCATCCAAACCTATTTCCACTCCATCATCAATCGAATGCATCTTG
GAAtgcaaaaaaacaatgaaaggaAGCTATTATGTCGAAAAggaaaatca
atgtttttgcttgaaaaataaagatcagaAGATATTCTCGAAGAAGAAAT
CTGAAGGAATATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035496XLOC_035496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056343-exon-scaffold_272-1491911889:195860..196225TCONS_00056343-exon-scaffold_272-1491911889:195860..196225Clytia hemisphaericaexon
TCONS_00056343-exon-scaffold_272-1510915933:195860..196225TCONS_00056343-exon-scaffold_272-1510915933:195860..196225Clytia hemisphaericaexon
TCONS_00056343-exon-scaffold_272-1575043694:195860..196225TCONS_00056343-exon-scaffold_272-1575043694:195860..196225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:195860..196225 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.304737	0	2.61471	1.90389	3.80846	4.48152	3.43411	2.40795	0	0	0.25663	0	0.339274	0	0	0.502734	0.65545	0.319706	0	0.471112	0	0.43306	0.929561	0.330684	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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