TCONS_00056344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056344
Unique NameTCONS_00056344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056344 ID=TCONS_00056344|Name=TCONS_00056344|organism=Clytia hemisphaerica|type=transcript|length=560bp
tcattttttaaagttactgcaccccaaaatgtaggCTAGCCTTTTTCCGT
ATAACTTCTAGTGAAATCAATAAATCttgttgattttttgtatggtaAGA
CCTAATACAACACAGAATcgatataaattttaaaaatgaggGAATTGatc
caaaaaaatttcaaaaatctaaattgcTTTTCTactgcaccccaaaatgt
aggtgtATTTTTGCGTGTTTGCAGAAAAAAGCAGAAgaattacatcaaaa
tttatgtttttttgtaaaaaagtttttaaccggAGACCTTCTGtcaaatt
atcaaaagaaaccTAAAAGTTTTGCTTCGCTTGGTGTTTTAAAATAGCAT
TTTAATCAGTTTCAGTTCCGTTTTTCACGGAAAAATTGctactttttgac
gtttttgacgtcagttttgtcaaaatttcgaaaaatgaggGTGCTTCAAA
ATGACGTATCTTTTATTGGGTTTGAGCTACCGGCATAAAATTTTGACACA
ATGTTCAGGATAAACAGGGCTTTAAAGTCGACCCTAGTTTTTAGGACTTA
TCTTTTAGTC
Run BLAST on NCBI

transcript from alignment at scaffold_272:236811..237370

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056344 ID=TCONS_00056344|Name=TCONS_00056344|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at scaffold_272:236811..237370 (Clytia hemisphaerica)
GACTAAAAGATAAGTCCTAAAAACTAGGGTCGACTTTAAAGCCCTGTTTA
TCCTGAACATTGTGTCAAAATTTTATGCCGGTAGCTCAAACCCAATAAAA
GATACGTCATTTTGAAGCACcctcatttttcgaaattttgacaaaactga
cgtcaaaaacgtcaaaaagtagCAATTTTTCCGTGAAAAACGGAACTGAA
ACTGATTAAAATGCTATTTTAAAACACCAAGCGAAGCAAAACTTTTAggt
ttcttttgataatttgaCAGAAGGTCTccggttaaaaacttttttacaaa
aaaacataaattttgatgtaattcTTCTGCTTTTTTCTGCAAACACGCAA
AAATacacctacattttggggtgcagtAGAAAAgcaatttagatttttga
aatttttttggatCAATTCcctcatttttaaaatttatatcgATTCTGTG
TTGTATTAGGTCTtaccatacaaaaaatcaacaaGATTTATTGATTTCAC
TAGAAGTTATACGGAAAAAGGCTAGcctacattttggggtgcagtaactt
taaaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035497XLOC_035497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056344-exon-scaffold_272-1491911889:236811..237370TCONS_00056344-exon-scaffold_272-1491911889:236811..237370Clytia hemisphaericaexon
TCONS_00056344-exon-scaffold_272-1510915933:236811..237370TCONS_00056344-exon-scaffold_272-1510915933:236811..237370Clytia hemisphaericaexon
TCONS_00056344-exon-scaffold_272-1575043694:236811..237370TCONS_00056344-exon-scaffold_272-1575043694:236811..237370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:236811..237370 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.451393	0.32031	1.07054	1.41189	0	0	0	0	0.216564	0.128035	0	0.269527	0.0839537	0.212327	0.0573944	0.353229	0.261102	0	0	0	1.47746	0.529049	0.208161	0.534482	0	0	0	0	0.604249	0.272595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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