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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056347 ID=TCONS_00056347|Name=TCONS_00056347|organism=Clytia hemisphaerica|type=transcript|length=2299bpRun BLAST on NCBI protein sequence of TCONS_00056347-protein >TCONS_00056347-protein ID=TCONS_00056347-protein|Name=TCONS_00056347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp MSIMSDEVNFLVYRYLQESGYQHSAFSFGIESHITQSNINNTVVPPGALVRun BLAST on NCBI transcript from alignment at scaffold_273:63203..74797+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056347 ID=TCONS_00056347|Name=TCONS_00056347|organism=Clytia hemisphaerica|type=transcript|length=11595bp|location=Sequence derived from alignment at scaffold_273:63203..74797+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_273:63203..74797+ >TCONS_00056347 ID=TCONS_00056347|Name=TCONS_00056347|organism=Clytia hemisphaerica|type=CDS|length=17136bp|location=Sequence derived from alignment at scaffold_273:63203..74797+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056347 vs. Swiss-Prot (Human)
Match: TBL1R (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1) HSP 1 Score: 403.675 bits (1036), Expect = 3.613e-131 Identity = 209/519 (40.27%), Postives = 309/519 (59.54%), Query Frame = 2
Query: 218 MSIMSDEVNFLVYRYLQESGYQHSAFSFGIESHITQSNINNTVVPPGALVNLLQKGIQFIEGELCVTDEGNLLENLDILGSIPLIDAVVPEALAERVQTIYR------------------------------LISQKVDAKKKLNQYAAELQDD-------DESILLHGHRREVFGCDWHPTENIVTTGAADGVAGLWYLD----SEEIKIIELNHAQDVNSKFTQSSDVTSLTWNPDGQTLATASTIENAIRIWNMEGNLLATLCGHKDTVMTLKWNSKGNLLLSASLDKKCILWNADTWQALREFQYHSGPVTDVDWQNEDIFASCSTDKLIFVCKMDSDQPLHTLQSHTADINCIEWNKSGDVLASCGDDKLVKLWNTK--GGFHDLAGHTKEVTQLKW----------NRKKLLASASYDATIRIWNTEQCTCLQTLNKHEDPINSISFHPDGDFLVSGALDGLLNVWNVQTGACIHTKRNTNGTGIFEVQWSPDASYICVCQTDSDVRILDAKK 1615
MSI SDEVNFLVYRYLQESG+ HSAF+FGIESHI+QSNIN +VPP AL++++QKG+Q++E E+ + ++G L + I S+ LIDAV+P+ + R Q YR ++ A N + ++ D +++++L GH EVF C W+P +++ +G+ D A +W L S +++ + ++ + DVTSL WN +G LAT S + RIW +GNL +TL HK + LKWN KGN +LSA +DK I+W+A T +A ++F +HS P DVDWQ+ + FASCSTD I VCK+ D+P+ T Q HT ++N I+W+ +G++LASC DD +K+W+ K HDL H KE+ +KW N +LASAS+D+T+R+W+ ++ C+ TL KH++P+ S++F PDG +L SG+ D +++WN QTGA +H+ R T GIFEV W+ + +D V +LD +K
Sbjct: 1 MSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIE-SLSLIDAVMPDVVQTR-QQAYRDKLAQQQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGS-YDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTG--GIFEVCWNAAGDKVGASASDGSVCVLDLRK 514 The following BLAST results are available for this feature:
BLAST of TCONS_00056347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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