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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056355 ID=TCONS_00056355|Name=TCONS_00056355|organism=Clytia hemisphaerica|type=transcript|length=1347bp
GTTTGATTGAACTAATTGATGAATCGATCAAATGAACCATCATGCAATGC
TTCAAGGGTTGTCTAGATAGAAATCTCCCTCCCAATCGCTCATTTCAGCA
TGCTGTCAAAAGAAATCGTTTCCATCATATCTTAACTTGACCTTCAAGAT
CAAAGGATATCAACTCgtgaaaattgttttaaaagaaGACGCACACTTGA
TGATGGTAAGTTTTCATCGTGTATCTATTGACGAAGAGCTAGAGTGATTT
CAAAGAAAAGATCTGGCGGTCTACAGATACAGAAATATTGGGTTATTTCC
CTTTTTCATTTGAACATTGGAAGACGAATTAGACGGTGACATAATCTCCA
ATTGGCTGTATTGACCTTCAAGAACGAGAACTTCCCAATACGCTAGTAAG
GAAAACTTATTGGAATACTTCTGTTAAATTGTAGTTCAGTATGGATAGTC
CTACACGCGATTCACCAACGACCGACAAACGTCACTCGACATCTCCCGTT
ACACGTCACTCCACGTCTCCCGTCAACAGTCCATCTCCTCCGTTAGAACG
TCAGAAGAAACCGTTCTCGATTGACTATCTACTTAATTTTTCACCGACAA
AAAAAACGACCCTCATCCGACAATCACCACCTGTTGAATACATCCAACCG
CCCTTCCACACTCGGCCTCCACACTTTATTAATGACCGGTTAAAAGAGCC
GGAAGACGAATCTAAAGTACCATCACCGACTTTATTGACTAACACCTCCA
GGAAAAGAGAGCTTGATCCCACCATAGAATTTCAATGGGATTTGAGCAAA
TGTTTTCTACGAAAACACAAGGCCAATCGTAAACCACGAACGCCCTTCTC
CGCCAGTCAACTTCTCACCTTGGAACAGAAATTTAAACGTAAACAATATT
TATCAATAAACGAGCGATCAGAATTAAGCGCTCAACTGAACTTAACTGAA
ACACAAATCAAAATTTGGTTTCAAAATCGTCGAGCAAAAGAAAAACGTCT
TAAAGAAGCGGAACTCGAGAAAACCGTAAGAACATTTTCACCGGGAAGTG
TAACATCACCAAACTATTCACCGTGCAGCTGTTGTTATTCGGGCTCTTCC
GTATTCAACTATCCACCTGTATCGTGCTCTCGGATATCCCGTTTTATGCA
TTAGTTGAAAATTCATGTGGGGATGTCTGTTTTGCCTGTTGTTGTATATA
TCTTTAATTTctaagattttaattttgttaatattttgtaaGGTGGCCTC
ATGTAAGGTTCGTGATCGACAACCGCTTTTCACAGACCCGCTAGGGTTTT
TTCAGCCAgcggggtaaaaataacggaccaaattCTCGATGAGGATT Run BLAST on NCBI transcript from alignment at scaffold_273:15813..19405- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056355 ID=TCONS_00056355|Name=TCONS_00056355|organism=Clytia hemisphaerica|type=transcript|length=3593bp|location=Sequence derived from alignment at scaffold_273:15813..19405- (Clytia hemisphaerica)
GTTTGATTGAACTAATTGATGAATCGATCAAATGAACCATCATGCAATGC
TTCAAGGGTTGTCTAGATAGAAATCTCCCTCCCAATCGCTCATTTCAGCA
TGCTGTCAAAAGAAATCGTTTCCATCATATCTTAACGTTAGTGAGCCTTT
CAAAAATTTGATTGCTCTCTATTGATCATTACAAAACCCCCGTCTTTTAA
TGAATCTTATATTCACTTAAACCCTTTTGAATGATAAGTCTTATGTTTGA
AAAACATTAAACCCTATCAGTTGACCAATCAGAATAAATATAAAAATCAG
AGAAAGAAATTTTATAGTTAAACCCTAAAGCTATCTCTATTCTTTGATAG
GGTGAAACTGTTAACCGTAGGTCGTCGAGACAATTCAGCAATTGTTTTTA
ATTGTTCATTAAGAACTCATCTTCTTATCGTTGGGGTTCAAGAATTCTTT
TATTCTTTTTATTATTCTATTGTGTGTTGATAACAATAGAGTGAATACCA
GCTTGATTAATTGCTATTCATATCTCTCTAGTTGACCTTCAAGATCAAAG
GATATCAACTCGTGAAAATTGTTTTAAAAGAAGACGCACACTTGATGATG
GTAAGTTTTCATCGTGTATCTATTGACGAAGAGCTAGAGTGATTTCAAAG
AAAAGATCTGGCGGTCTACAGATACAGAAATATTGGGTTATTTCCCTTTT
TCATTTGAACATTGGAAGACGAATTAGACGGTGACATAATCTCCAATTGG
CTGTATTGACCTTCAAGAACGAGAACTTCCCAATACGCTAGTAAGGAAAA
CTTATTGGAATACTTCTGTTAAATTGTAGTTCAGTATGGATAGTCCTACA
CGCGATTCACCAACGACCGACAAACGTCACTCGACATCTCCCGTTACACG
TCACTCCACGTCTCCCGTCAACAGTCCATCTCCTCCGTTAGAACGTCAGA
AGAAACCGTTCTCGATTGACTATCTACTTAATTTTTCACCGACAAAAAAA
ACGACCCTCATCCGACAATCACCACCTGTTGAATACATCCAACCGCCCTT
CCACACTCGGCCTCCACACTTTATTAATGACCGGTTAAAAGAGCCGGAAG
ACGAATCTAAAGTACCATCACCGACTTTATTGACTAACACCTCCAGGAAA
AGAGAGCTTGATCCCACCATAGGTATGCAGATTGTTCATTTCTTTGGATT
CATATGTAGTATCTGGCCTCCTTTACTGAGCACTTTCGTTACTGGTCGAT
CAATGCCTCTTTGAATCAATTGGATTCACGCTGTTTTAGTCCACTTTGCC
CTTTTAAAGAGTTTTCTGAACAATGCCTGACTCCCGGTGGGGTTACTTAA
GCAAAAATGGGTGTTGGGTATGTGCGGACAGCAAGGGTCGGTTTTTCAAC
CTTTTCAAGTCTCTAAGGCTAAGGGTCGCAAAAATCAGAAATATTTAAAT
TAGTCTCTTTAAGGGTCGGAACATTTACAATTTCTAGGAAAGTTTTTTGA
TTTAGAGTGGAAAAATTGTAAAAAAGTCTCTCTAAGGGAATTTTTCAGAA
ATTGAAGAAAGTTAAGCATTAAAGTAAACGATTTGGATGTGTATATAAGA
AATTTCCTTGGGCATCTATTAGAGAATCTCAGACCGTTTTCATGTTGAAT
TCACTTCCATCAATTTAAGGCGGTTTTCACAATCCTTTAAGAAATTAATT
AATTTGTTTAATTGATTGAGGTCAATAAATTGGCAATAAAATGTCGAAAT
ATCTAGCCTATATAGTAGTTAACTTGGTTTAGCTGACGTGTCTAGATATC
TTTAGAAATCGACAGTATCTAAAGCTTTCAGTGAAGGTGGGGATTAATCT
AAACTTTCTTTGAATGTCCCTGAACACTCCTTTCTAAAATTTCCGGACGA
GAATGTGGTTTTATCTTGTGTAATTCGGCTCCCCATTGAAGTCAATCAGT
CATTTAGGTGACAACTGGTGACGTTGCACTACGCGCCAACTCAAGGCGTG
ATTTTAAACGATTAATAAAATTAAAACCCCTACTTTGTAATAAATTAAGG
TTCTTAAAAATTTTAAGATGGCTCGTAATTGTTGCGTTAATATTTCAATG
TCTTTTTCCGCTCGTGAAACTTTGGTCTACACATTTCTAATTGTCATGTT
AAACTTTTAAAGCTTAATTAATTTGAAGCTTACAAATTACAAAATTAAGT
CTCGACTTTTAAACCTTACGAAGCCTTGACCTTGGAGCCTTGGCCTACAA
CTTTTTTATAAGAACATCCACAATTTTTAAATATGCAGGGAGCTTAAACC
TGAAAGCCTAAGCTGAACAAGCTTTGAACTTATCACTTGCACATAATAAT
AAACCAATTAGAGTTAATGAGTAATTGATCACATAAATTGCCTAGTTGGC
GACACGAAATTTTTATCATGTTTTAAAACTCGAATTTTGTCATTTTGTGA
TAGTGGTATAGCTCCTCCTCAAACTTGTTTCTTCTCACTTAATTTGCGTT
TTATCTTTTGATTGGTTAATTGCTCTGACTTAATTTGTTTATGATCATGT
CATGTATGCCATTTTTACTGCTAATTATCATATCCCTTAATTAGCTGAAT
TGAAATGAGGCTTGTCATCTTGTCACAGACCCCTGTGCTAATTTTAAACT
TAGTTGCACCCTGTAATCATGCTGTAATCACATGAACCATATCAAGTGTC
GAACCAATACACGGTTTTTTATAAGAACAAACTATATAAGAACATAAGAT
TTCGATGTCCCAAATGTTAAGAATAAGTTAAGAATAATATATAACTTTAC
GGACTCAAGAACGCCAAGTTTTATAGGAAAATGGACAAAAATACTAAAAA
AATTGGCGAAAGTAAGAACATTTTAAGAATATTTTTAGGCTTAAAACTCA
AAAAGTTAAGAACATCCCAAGGCTTCAAAAATATTGGATGTTCTTGCAAA
AAAAAGCGTAACCAATAGCGGAGCTTTGTTTGAACTTCGATACCATTATA
ACGTTCCTACTTTTTCATTACAGAATTTCAATGGGATTTGAGCAAATGTT
TTCTACGAAAACACAAGGCCAATCGTAAACCACGAACGCCCTTCTCCGCC
AGTCAACTTCTCACCTTGGAACAGAAATTTAAACGTAAACAATATTTATC
AATAAACGAGCGATCAGAATTAAGCGCTCAACTGAACTTAACTGAAACAC
AAATCAAAATTTGGTTTCAAAATCGTCGAGCAAAAGAAAAACGTCTTAAA
GAAGCGGAACTCGAGAAAACCGTAAGAACATTTTCACCGGGAAGTGTAAC
ATCACCAAACTATTCACCGTGCAGCTGTTGTTATTCGGGCTCTTCCGTAT
TCAACTATCCACCTGTATCGTGCTCTCGGATATCCCGTTTTATGCATTAG
TTGAAAATTCATGTGGGGATGTCTGTTTTGCCTGTTGTTGTATATATCTT
TAATTTCTAAGATTTTAATTTTGTTAATATTTTGTAAGGTGGCCTCATGT
AAGGTTCGTGATCGACAACCGCTTTTCACAGACCCGCTAGGGTTTTTTCA
GCCAGCGGGGTAAAAATAACGGACCAAATTCTCGATGAGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056355-exon-scaffold_273-1575043694:19270..19405 | TCONS_00056355-exon-scaffold_273-1575043694:19270..19405 | Clytia hemisphaerica | exon |
| TCONS_00056355-exon-scaffold_273-1575043694:18234..18874 | TCONS_00056355-exon-scaffold_273-1575043694:18234..18874 | Clytia hemisphaerica | exon |
| TCONS_00056355-exon-scaffold_273-1575043694:15813..16382 | TCONS_00056355-exon-scaffold_273-1575043694:15813..16382 | Clytia hemisphaerica | exon |
| TCONS_00056355-exon-scaffold_273-1510915933:19270..19405 | TCONS_00056355-exon-scaffold_273-1510915933:19270..19405 | Clytia hemisphaerica | exon |
| TCONS_00056355-exon-scaffold_273-1510915933:18234..18874 | TCONS_00056355-exon-scaffold_273-1510915933:18234..18874 | Clytia hemisphaerica | exon |
| TCONS_00056355-exon-scaffold_273-1510915933:15813..16382 | TCONS_00056355-exon-scaffold_273-1510915933:15813..16382 | Clytia hemisphaerica | exon |
| TCONS_00056355-exon-scaffold_273-1491911889:19270..19405 | TCONS_00056355-exon-scaffold_273-1491911889:19270..19405 | Clytia hemisphaerica | exon |
| TCONS_00056355-exon-scaffold_273-1491911889:18234..18874 | TCONS_00056355-exon-scaffold_273-1491911889:18234..18874 | Clytia hemisphaerica | exon |
| TCONS_00056355-exon-scaffold_273-1491911889:15813..16382 | TCONS_00056355-exon-scaffold_273-1491911889:15813..16382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_273 | supercontig | scaffold_273:15813..19405 - |
Blast
BLAST of TCONS_00056355 vs. Swiss-Prot (Human)
Match: MSX2 (Homeobox protein MSX-2 OS=Homo sapiens GN=MSX2 PE=1 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 1.141e-23 Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 3
Query: 801 CFLRKHKANRKPRTPFSASQLLTLEQKFKRKQYLSINERSELSAQLNLTETQIKIWFQN 977
C LRKHK NRKPRTPF+ SQLL LE+KF++KQYLSI ER+E S+ LNLTETQ+KIWFQN
Sbjct: 134 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192
The following BLAST results are available for this feature:
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