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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056363 ID=TCONS_00056363|Name=TCONS_00056363|organism=Clytia hemisphaerica|type=transcript|length=880bp
NNCTGTGGAGGGAGGTTGAAAAACTCTGAGTTAACGTATGAACAAAAGCA
CCCCCTTCTTATAGACAGAAAACACCCAATAGCGAAAATGATCATTCGAG
AATCACATGCAAACGTCATGCACAATGGAGTAAGTCAGACTCTTACAAAC
CTTCGAAAACGCTATTGGATTACAAAACCAAGAAACTTAATCAAAACGGT
GATCAAAGAATGCACCACATGCCGAAAACACGAGGGTAAACCGTATGGTT
ACCCAAACGAACCATCACTGCCGAGAGAACGAGTTACTGCAAACTATGCT
TACGAAAATATGGGCATAGATTATCTCGGACCAGTCTACGTGAAAGACAT
TTACGCAAAGAACAATGAAACTCACAAAGCCTGGATCGCCTTAACAACGT
GTACAACAACGAGGGCCGTCTACTTAGACCTCGTTTCAGACTGTTCCGGA
CCGACTTGTGTTAACCTGTTAAAGAGATTGATTTCTACTCATGGCACGCC
AAAAGTCATGATATCTGATAACGGGACTAATTTTATCTCAACAGATGtac
aaaatttcatggcaaacaGAGGAACACTGTGGAAATTTAACATTGCAAAA
GCTCCGTGGTATGGAGGCTTTTTTGAACGTCTCGTCCGATCCGTCAAACG
TTGTTTACGAAAATCTATCGAAAACGCTAAGCTGAACTATGAGGAAATGT
TAACTATTTTGAAAGAGGTCgagaatattttgaataatCGACCATTGACA
TATCTTTACACTGAGGAAAATGTTGATCCTTTGACACCTAATAAGTTAAT
TTATGGGCGTGACCTGAACACGAATATCGCGCCAAACTTGaacgaagaag
aaaacgaaaatgTCGATTTGGACACACGTT Run BLAST on NCBI protein sequence of TCONS_00056363-protein >TCONS_00056363-protein ID=TCONS_00056363-protein|Name=TCONS_00056363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
XCGGRLKNSELTYEQKHPLLIDRKHPIAKMIIRESHANVMHNGVSQTLTN
LRKRYWITKPRNLIKTVIKECTTCRKHEGKPYGYPNEPSLPRERVTANYA
YENMGIDYLGPVYVKDIYAKNNETHKAWIALTTCTTTRAVYLDLVSDCSG
PTCVNLLKRLISTHGTPKVMISDNGTNFISTDVQNFMANRGTLWKFNIAK
APWYGGFFERLVRSVKRCLRKSIENAKLNYEEMLTILKEVENILNNRPLT
YLYTEENVDPLTPNKLIYGRDLNTNIAPNLNEEENENVDLDTR Run BLAST on NCBI transcript from alignment at scaffold_273:1..880 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056363 ID=TCONS_00056363|Name=TCONS_00056363|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at scaffold_273:1..880 (Clytia hemisphaerica)
AACGTGTGTCCAAATCGAcattttcgttttcttcttcgttCAAGTTTGGC
GCGATATTCGTGTTCAGGTCACGCCCATAAATTAACTTATTAGGTGTCAA
AGGATCAACATTTTCCTCAGTGTAAAGATATGTCAATGGTCGattattca
aaatattctcGACCTCTTTCAAAATAGTTAACATTTCCTCATAGTTCAGC
TTAGCGTTTTCGATAGATTTTCGTAAACAACGTTTGACGGATCGGACGAG
ACGTTCAAAAAAGCCTCCATACCACGGAGCTTTTGCAATGTTAAATTTCC
ACAGTGTTCCTCtgtttgccatgaaattttgtaCATCTGTTGAGATAAAA
TTAGTCCCGTTATCAGATATCATGACTTTTGGCGTGCCATGAGTAGAAAT
CAATCTCTTTAACAGGTTAACACAAGTCGGTCCGGAACAGTCTGAAACGA
GGTCTAAGTAGACGGCCCTCGTTGTTGTACACGTTGTTAAGGCGATCCAG
GCTTTGTGAGTTTCATTGTTCTTTGCGTAAATGTCTTTCACGTAGACTGG
TCCGAGATAATCTATGCCCATATTTTCGTAAGCATAGTTTGCAGTAACTC
GTTCTCTCGGCAGTGATGGTTCGTTTGGGTAACCATACGGTTTACCCTCG
TGTTTTCGGCATGTGGTGCATTCTTTGATCACCGTTTTGATTAAGTTTCT
TGGTTTTGTAATCCAATAGCGTTTTCGAAGGTTTGTAAGAGTCTGACTTA
CTCCATTGTGCATGACGTTTGCATGTGATTCTCGAATGATCATTTTCGCT
ATTGGGTGTTTTCTGTCTATAAGAAGGGGGTGCTTTTGTTCATACGTTAA
CTCAGAGTTTTTCAACCTCCCTCCACAGNN Coding sequence (CDS) from alignment at scaffold_273:1..880 >TCONS_00056363 ID=TCONS_00056363|Name=TCONS_00056363|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_273:1..880 (Clytia hemisphaerica)
ACGTGTGTCCAAATCGAcattttcgttttcttcttcgttCAAGTTTGGCG
CGATATTCGTGTTCAGGTCACGCCCATAAATTAACTTATTAGGTGTCAAA
GGATCAACATTTTCCTCAGTGTAAAGATATGTCAATGGTCGattattcaa
aatattctcGACCTCTTTCAAAATAGTTAACATTTCCTCATAGTTCAGCT
TAGCGTTTTCGATAGATTTTCGTAAACAACGTTTGACGGATCGGACGAGA
CGTTCAAAAAAGCCTCCATACCACGGAGCTTTTGCAATGTTAAATTTCCA
CAGTGTTCCTCtgtttgccatgaaattttgtaCATCTGTTGAGATAAAAT
TAGTCCCGTTATCAGATATCATGACTTTTGGCGTGCCATGAGTAGAAATC
AATCTCTTTAACAGGTTAACACAAGTCGGTCCGGAACAGTCTGAAACGAG
GTCTAAGTAGACGGCCCTCGTTGTTGTACACGTTGTTAAGGCGATCCAGG
CTTTGTGAGTTTCATTGTTCTTTGCGTAAATGTCTTTCACGTAGACTGGT
CCGAGATAATCTATGCCCATATTTTCGTAAGCATAGTTTGCAGTAACTCG
TTCTCTCGGCAGTGATGGTTCGTTTGGGTAACCATACGGTTTACCCTCGT
GTTTTCGGCATGTGGTGCATTCTTTGATCACCGTTTTGATTAAGTTTCTT
GGTTTTGTAATCCAATAGCGTTTTCGAAGGTTTGTAAGAGTCTGACTTAC
TCCATTGTGCATGACGTTTGCATGTGATTCTCGAATGATCATTTTCGCTA
TTGGGTGTTTTCTGTCTATAAGAAGGGGGTGCTTTTGTTCATACGTTAAC
TCAGAGTTTTTCAACCTCCCTCCACAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056363-exon-scaffold_273-1491911889:1..880 | TCONS_00056363-exon-scaffold_273-1491911889:1..880 | Clytia hemisphaerica | exon |
| TCONS_00056363-exon-scaffold_273-1510915933:1..880 | TCONS_00056363-exon-scaffold_273-1510915933:1..880 | Clytia hemisphaerica | exon |
| TCONS_00056363-exon-scaffold_273-1575043694:1..880 | TCONS_00056363-exon-scaffold_273-1575043694:1..880 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_273 | supercontig | scaffold_273:1..880 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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