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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056364 ID=TCONS_00056364|Name=TCONS_00056364|organism=Clytia hemisphaerica|type=transcript|length=908bp
GTTTTGTTTTGGTGAAAGTTGACGTGGTGGTGACGACAAATCAGCATCCT
CATCATCAAgcgaaataaaaacatcaaaatcaacaGCAGTCACATCAGCA
TCAGCATCATGACATTCAGAATTTGATGTAGTAGCAGGTTGGTANAAATC
AGCATCCTCATCATCAAgcgaaataaaaacatcaaaatcaacaGCAGTCG
CATCAGCATCAGCATCATGACATTCAGAATTTGATGTAGTAGCAGGTTGG
TCAATAGGTTGTTGTGAGCAATTTGCTGTTGTTTTCTCGTCGTCAGCTTT
TCCCTTTACAAGGTTTTGTTTTGGtgaaagttttgataaaaaagtcatca
attgAGTTTGTTGTTTACTGTTGTTGGTTTTTGGAGTTTTCAATTCAGGA
TCAGGTTGATGTTTTTCTGATAAATCAAgagatgattttcttctttttgt
acaAGTGGGTAGTAGAGATGATGAAGATGATGGCAGAGACTCACTGTTAA
ATCTTTTGCTCCTCTTTTCAAAGTCATAGCCCATGTTCTTCGTTGGATAA
GGATGCTGCTCTGTGGGCCTTCCATCAACAAAATGTTCACTACAAACCCT
TGCATCCTTACTTGGGTCCAGAAGTTTAGTCTTTGATCCTGGAGCCAAAC
GATTAATGTTTCTCCTCCAGATTGACCTTTTCTCTGGGTGCTTTTTGAGG
GTTGGGACCGGAAAAAGTTGGAAAGGTGGCTCTTCGACATGATTGATGTT
CACTTTCTTCCACTTCTTCAGCTTGTAAGATCCATTTCGGCAACCAATAA
CAATACAATGATAAGACATTTTGGTGAAACACAGCCTGCTTCGCTTGACT
AAACCgccattatgaaaattttgatcgaaattttcatgatattttcaCAC
GGAACCGT Run BLAST on NCBI protein sequence of TCONS_00056364-protein >TCONS_00056364-protein ID=TCONS_00056364-protein|Name=TCONS_00056364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MSYHCIVIGCRNGSYKLKKWKKVNINHVEEPPFQLFPVPTLKKHPEKRSI
WRRNINRLAPGSKTKLLDPSKDARVCSEHFVDGRPTEQHPYPTKNMGYDF
EKRSKRFNSESLPSSSSSLLPTCTKRRKSSLDLSEKHQPDPELKTPKTNN
SKQQTQLMTFLSKLSPKQNLVKGKADDEKTTANCSQQPIDQPATTSNSEC
HDADADATAVDFDVFISLDDEDADXYQPATTSNSECHDADADVTAVDFDV
FISLDDEDADLSSPPRQLSPKQN Run BLAST on NCBI transcript from alignment at scaffold_273:4657..5564 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056364 ID=TCONS_00056364|Name=TCONS_00056364|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at scaffold_273:4657..5564 (Clytia hemisphaerica)
ACGGTTCCGTGtgaaaatatcatgaaaatttcgatcaaaattttcataat
ggcGGTTTAGTCAAGCGAAGCAGGCTGTGTTTCACCAAAATGTCTTATCA
TTGTATTGTTATTGGTTGCCGAAATGGATCTTACAAGCTGAAGAAGTGGA
AGAAAGTGAACATCAATCATGTCGAAGAGCCACCTTTCCAACTTTTTCCG
GTCCCAACCCTCAAAAAGCACCCAGAGAAAAGGTCAATCTGGAGGAGAAA
CATTAATCGTTTGGCTCCAGGATCAAAGACTAAACTTCTGGACCCAAGTA
AGGATGCAAGGGTTTGTAGTGAACATTTTGTTGATGGAAGGCCCACAGAG
CAGCATCCTTATCCAACGAAGAACATGGGCTATGACTTTGAAAAGAGGAG
CAAAAGATTTAACAGTGAGTCTCTGCCATCATCTTCATCATCTCTACTAC
CCACTtgtacaaaaagaagaaaatcatctcTTGATTTATCAGAAAAACAT
CAACCTGATCCTGAATTGAAAACTCCAAAAACCAACAACAGTAAACAACA
AACTcaattgatgacttttttatcaaaactttcaCCAAAACAAAACCTTG
TAAAGGGAAAAGCTGACGACGAGAAAACAACAGCAAATTGCTCACAACAA
CCTATTGACCAACCTGCTACTACATCAAATTCTGAATGTCATGATGCTGA
TGCTGATGCGACTGCtgttgattttgatgtttttatttcgcTTGATGATG
AGGATGCTGATTTNTACCAACCTGCTACTACATCAAATTCTGAATGTCAT
GATGCTGATGCTGATGTGACTGCtgttgattttgatgtttttatttcgcT
TGATGATGAGGATGCTGATTTGTCGTCACCACCACGTCAACTTTCACCAA
AACAAAAC Coding sequence (CDS) from alignment at scaffold_273:4657..5564 >TCONS_00056364 ID=TCONS_00056364|Name=TCONS_00056364|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_273:4657..5564 (Clytia hemisphaerica)
ATGTCTTATCATTGTATTGTTATTGGTTGCCGAAATGGATCTTACAAGCT
GAAGAAGTGGAAGAAAGTGAACATCAATCATGTCGAAGAGCCACCTTTCC
AACTTTTTCCGGTCCCAACCCTCAAAAAGCACCCAGAGAAAAGGTCAATC
TGGAGGAGAAACATTAATCGTTTGGCTCCAGGATCAAAGACTAAACTTCT
GGACCCAAGTAAGGATGCAAGGGTTTGTAGTGAACATTTTGTTGATGGAA
GGCCCACAGAGCAGCATCCTTATCCAACGAAGAACATGGGCTATGACTTT
GAAAAGAGGAGCAAAAGATTTAACAGTGAGTCTCTGCCATCATCTTCATC
ATCTCTACTACCCACTtgtacaaaaagaagaaaatcatctcTTGATTTAT
CAGAAAAACATCAACCTGATCCTGAATTGAAAACTCCAAAAACCAACAAC
AGTAAACAACAAACTcaattgatgacttttttatcaaaactttcaCCAAA
ACAAAACCTTGTAAAGGGAAAAGCTGACGACGAGAAAACAACAGCAAATT
GCTCACAACAACCTATTGACCAACCTGCTACTACATCAAATTCTGAATGT
CATGATGCTGATGCTGATGCGACTGCtgttgattttgatgtttttatttc
gcTTGATGATGAGGATGCTGATTTNTACCAACCTGCTACTACATCAAATT
CTGAATGTCATGATGCTGATGCTGATGTGACTGCtgttgattttgatgtt
tttatttcgcTTGATGATGAGGATGCTGATTTGTCGTCACCACCACGTCA
ACTTTCACCAAAACAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056364-exon-scaffold_273-1491911889:4657..5564 | TCONS_00056364-exon-scaffold_273-1491911889:4657..5564 | Clytia hemisphaerica | exon |
| TCONS_00056364-exon-scaffold_273-1510915933:4657..5564 | TCONS_00056364-exon-scaffold_273-1510915933:4657..5564 | Clytia hemisphaerica | exon |
| TCONS_00056364-exon-scaffold_273-1575043694:4657..5564 | TCONS_00056364-exon-scaffold_273-1575043694:4657..5564 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_273 | supercontig | scaffold_273:4657..5564 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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