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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056369 ID=TCONS_00056369|Name=TCONS_00056369|organism=Clytia hemisphaerica|type=transcript|length=1314bp
AAAAAATCTGACCTTGCTTTGTCATTCACTCGTGAAAAACTACTAACTAA
GTAGCCACTTACATTGGGCAGTCAAAATGGAGCTGACTTTATTGATTACA
CTTTTGGCCTTTAGATTTTCGTTAAGTCAAGAAAATCCAACTCTACCTTT
CCTACCGTTCAAACACCTGCACTCAAACACTGCTATTGATGGACCTCAAC
CATGGTTTGACGGAGAAGTACCTTCCAAAGATCATTGTTTTCACAAATGT
ATTAAACAAAATTTCACAAATTGCGAATATGTTCAATACAAAGAGGTCTC
GGCAACAACATGGCTTTGCAAACTATATGGAATCATATCAGATCTGTCGA
ATTATTTGATTTCAACAGAAGGGGAGATGCTGGCCCAAGCAGTCCACCAA
AACATAGATTGCCAAGATTGGTATGATAAAGGTTATAAACAATCTGgtgt
atttttcatttattatgaAAGATACAAGATGAAAGTTTGGTGTAAGATGT
ACGGAGCACCCTATTTTGTAGGGATgattgaaatccaaaaaagaaaagat
ggcTCAGTAAACTTCAATCGCACTTGGAATGAATATAAAGTTGGTTTTGG
TGACCCTGCAACTGAATATTGGTTGGGGAACGATAATATTCACAAATTAA
CATATGGACGAAATATGTTGTTAAGAATTGGAGCTGACCCATTTATTGGG
AATTCAGTTtacacgattttcgaaaatttctttATCGAGAATGAAGCAAA
TAACTACACAATACATACTGGTGCACCACATCCAAATTTTGACAGTTATG
CTGTCAATGGTGACTGGATCTTCCATGATCAAAAACCTTTCAGTACGATA
GATCGAGATCTTAATGGCTTTAATTGTCCATTTACTTACAAATGTGGGTG
GTGGTTCAATTATTGCTTTAAGATGAACTTCAACGGTGTTTACAAATTCA
ATGAAGCAACTACAAATCGCCAAGGTATCATCTGGACAGCCTTTATTGGA
AACGAAAAAAGTCttaagaaaagttctttatcgATCACCAGAATGACTTA
ATTATAAAAGACataaattttccaagaaatcaAGACTGCACACGAACTAT
AGCGTGTTTTGtgtatatcttttttcaattttcggtcAGAATAAAGTTTT
CCCATTATCCTATCGACGGGGCTTTTTGCTGGGCGTTCGTCATCCTATTA
CAGACGGCTATGCAAAAGTTAAAATTTGTCTGTCCATGtttctttacttt
actttactGGATTACTACGAAGTTACATAAATTTATTATTGTTCTTTTGG
CGCTTCATAGTCAC Run BLAST on NCBI protein sequence of TCONS_00056369-protein >TCONS_00056369-protein ID=TCONS_00056369-protein|Name=TCONS_00056369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MELTLLITLLAFRFSLSQENPTLPFLPFKHLHSNTAIDGPQPWFDGEVPS
KDHCFHKCIKQNFTNCEYVQYKEVSATTWLCKLYGIISDLSNYLISTEGE
MLAQAVHQNIDCQDWYDKGYKQSGVFFIYYERYKMKVWCKMYGAPYFVGM
IEIQKRKDGSVNFNRTWNEYKVGFGDPATEYWLGNDNIHKLTYGRNMLLR
IGADPFIGNSVYTIFENFFIENEANNYTIHTGAPHPNFDSYAVNGDWIFH
DQKPFSTIDRDLNGFNCPFTYKCGWWFNYCFKMNFNGVYKFNEATTNRQG
IIWTAFIGNEKSLKKSSLSITRMT Run BLAST on NCBI transcript from alignment at scaffold_273:131718..133031 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056369 ID=TCONS_00056369|Name=TCONS_00056369|organism=Clytia hemisphaerica|type=transcript|length=1314bp|location=Sequence derived from alignment at scaffold_273:131718..133031 (Clytia hemisphaerica)
GTGACTATGAAGCGCCAAAAGAACAATAATAAATTTATGTAACTTCGTAG
TAATCCagtaaagtaaagtaaagaaaCATGGACAGACAAATTTTAACTTT
TGCATAGCCGTCTGTAATAGGATGACGAACGCCCAGCAAAAAGCCCCGTC
GATAGGATAATGGGAAAACTTTATTCTgaccgaaaattgaaaaaagatat
acaCAAAACACGCTATAGTTCGTGTGCAGTCTtgatttcttggaaaattt
atGTCTTTTATAATTAAGTCATTCTGGTGATcgataaagaacttttctta
aGACTTTTTTCGTTTCCAATAAAGGCTGTCCAGATGATACCTTGGCGATT
TGTAGTTGCTTCATTGAATTTGTAAACACCGTTGAAGTTCATCTTAAAGC
AATAATTGAACCACCACCCACATTTGTAAGTAAATGGACAATTAAAGCCA
TTAAGATCTCGATCTATCGTACTGAAAGGTTTTTGATCATGGAAGATCCA
GTCACCATTGACAGCATAACTGTCAAAATTTGGATGTGGTGCACCAGTAT
GTATTGTGTAGTTATTTGCTTCATTCTCGATaaagaaattttcgaaaatc
gtgtaAACTGAATTCCCAATAAATGGGTCAGCTCCAATTCTTAACAACAT
ATTTCGTCCATATGTTAATTTGTGAATATTATCGTTCCCCAACCAATATT
CAGTTGCAGGGTCACCAAAACCAACTTTATATTCATTCCAAGTGCGATTG
AAGTTTACTGAgccatcttttcttttttggatttcaatcATCCCTACAAA
ATAGGGTGCTCCGTACATCTTACACCAAACTTTCATCTTGTATCTTtcat
aataaatgaaaaatacacCAGATTGTTTATAACCTTTATCATACCAATCT
TGGCAATCTATGTTTTGGTGGACTGCTTGGGCCAGCATCTCCCCTTCTGT
TGAAATCAAATAATTCGACAGATCTGATATGATTCCATATAGTTTGCAAA
GCCATGTTGTTGCCGAGACCTCTTTGTATTGAACATATTCGCAATTTGTG
AAATTTTGTTTAATACATTTGTGAAAACAATGATCTTTGGAAGGTACTTC
TCCGTCAAACCATGGTTGAGGTCCATCAATAGCAGTGTTTGAGTGCAGGT
GTTTGAACGGTAGGAAAGGTAGAGTTGGATTTTCTTGACTTAACGAAAAT
CTAAAGGCCAAAAGTGTAATCAATAAAGTCAGCTCCATTTTGACTGCCCA
ATGTAAGTGGCTACTTAGTTAGTAGTTTTTCACGAGTGAATGACAAAGCA
AGGTCAGATTTTTT Coding sequence (CDS) from alignment at scaffold_273:131718..133031 >TCONS_00056369 ID=TCONS_00056369|Name=TCONS_00056369|organism=Clytia hemisphaerica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_273:131718..133031 (Clytia hemisphaerica)
TTAAGTCATTCTGGTGATcgataaagaacttttcttaaGACTTTTTTCGT
TTCCAATAAAGGCTGTCCAGATGATACCTTGGCGATTTGTAGTTGCTTCA
TTGAATTTGTAAACACCGTTGAAGTTCATCTTAAAGCAATAATTGAACCA
CCACCCACATTTGTAAGTAAATGGACAATTAAAGCCATTAAGATCTCGAT
CTATCGTACTGAAAGGTTTTTGATCATGGAAGATCCAGTCACCATTGACA
GCATAACTGTCAAAATTTGGATGTGGTGCACCAGTATGTATTGTGTAGTT
ATTTGCTTCATTCTCGATaaagaaattttcgaaaatcgtgtaAACTGAAT
TCCCAATAAATGGGTCAGCTCCAATTCTTAACAACATATTTCGTCCATAT
GTTAATTTGTGAATATTATCGTTCCCCAACCAATATTCAGTTGCAGGGTC
ACCAAAACCAACTTTATATTCATTCCAAGTGCGATTGAAGTTTACTGAgc
catcttttcttttttggatttcaatcATCCCTACAAAATAGGGTGCTCCG
TACATCTTACACCAAACTTTCATCTTGTATCTTtcataataaatgaaaaa
tacacCAGATTGTTTATAACCTTTATCATACCAATCTTGGCAATCTATGT
TTTGGTGGACTGCTTGGGCCAGCATCTCCCCTTCTGTTGAAATCAAATAA
TTCGACAGATCTGATATGATTCCATATAGTTTGCAAAGCCATGTTGTTGC
CGAGACCTCTTTGTATTGAACATATTCGCAATTTGTGAAATTTTGTTTAA
TACATTTGTGAAAACAATGATCTTTGGAAGGTACTTCTCCGTCAAACCAT
GGTTGAGGTCCATCAATAGCAGTGTTTGAGTGCAGGTGTTTGAACGGTAG
GAAAGGTAGAGTTGGATTTTCTTGACTTAACGAAAATCTAAAGGCCAAAA
GTGTAATCAATAAAGTCAGCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056369-exon-scaffold_273-1491911889:131718..133031 | TCONS_00056369-exon-scaffold_273-1491911889:131718..133031 | Clytia hemisphaerica | exon |
| TCONS_00056369-exon-scaffold_273-1510915933:131718..133031 | TCONS_00056369-exon-scaffold_273-1510915933:131718..133031 | Clytia hemisphaerica | exon |
| TCONS_00056369-exon-scaffold_273-1575043694:131718..133031 | TCONS_00056369-exon-scaffold_273-1575043694:131718..133031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_273 | supercontig | scaffold_273:131718..133031 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056369 vs. Swiss-Prot (Human)
Match: ANGL6 (Angiopoietin-related protein 6 OS=Homo sapiens GN=ANGPTL6 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.970e-30 Identity = 75/217 (34.56%), Postives = 119/217 (54.84%), Query Frame = 2
Query: 407 DCQDWYDKGYKQSGVFFIYYERYKMKVWC--KMYGAPYFVGMIEIQKRKDGSVNFNRTWNEYKVGFGDPATEYWLGNDNIHKLTYGRNMLLRIGADPFIGNSVYTXXXXXXXXXXXXXYTIHTGAPHPNFDSYAVNGDWI-FHDQKPFSTIDRDLNGF--NCPFTYKCGWWFNYCFKMNFNGVYKFNEATTNR--QGIIWTAFIGNEKSLKKSSLSI 1036
DC + G++QSGV+ + R+ + VWC ++ G + V IQ+R+DGSVNF TW YK GFG P EYWLG + +++LT + L + + + G ++ F +E E+++Y + G H + GD + +H+ KPFST+DRD + + NC + GWW++ C N NGV+ +R G+ W F G SL+K+++ I
Sbjct: 259 DCAEARQAGHEQSGVYELRVGRHVVSVWCEQQLEGGGWTV----IQRRQDGSVNFFTTWQHYKAGFGRPDGEYWLGLEPVYQLTSRGDHELLVLLEDWGGRGARAHYDGFSLEPESDHYRLRLGQYHGD------AGDSLSWHNDKPFSTVDRDRDSYSGNCALYQRGGWWYHACAHSNLNGVWHHGGHYRSRYQDGVYWAEFRGGAYSLRKAAMLI 465
The following BLAST results are available for this feature:
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